Motif IL_37497.8 Version IL_37497.8 of this group appears in releases 3.88 to 3.88
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 1-5 | 3-4 | |||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_4V9F_079 | 4V9F | 1.1997 | 0 | Single bulged A | 0 | LSU rRNA | U | 2290 | A | 2291 | C | 2292 | * | G | 2279 | A | 2280 | cWW | cWW |
2 | IL_5TBW_098 | 5TBW | 1.2103 | 0 | Single bulged A | 1 | LSU rRNA | C | 2625 | A | 2626 | C | 2627 | * | G | 2614 | G | 2615 | cWW | cWW |
3 | IL_8C3A_107 | 8C3A | 1.1802 | 0 | Single bulged A | 1 | LSU rRNA | C | 2597 | A | 2598 | C | 2599 | * | G | 2586 | G | 2587 | cWW | cWW |
4 | IL_7KGA_005 | 7KGA | 1.0313 | 0 | Single bulged A | B | Flavivirus DB element | U | 39 | A | 40 | G | 41 | * | C | 14 | A | 15 | cWW | cWW |
5 | IL_4V9F_032 | 4V9F | 1.3048 | 0 | Single bulged A | 0 | LSU rRNA | U | 942 | A | 943 | G | 944 | * | C | 1023 | G | 1024 | cWW | cWW |
6 | IL_3G9C_005 | 3G9C | 1.0981 | 0 | Single bulged A | F+Q | RNA (11-mer) + GLMS RIBOZYME | C | 5 | A | 6 | G | 7 | * | C | 52 | G | 53 | cWW | cWW |
7 | IL_5J7L_302 | 5J7L | 0.7768 | 0 | Single bulged A | DA | LSU rRNA | C | 1489 | A | 1490 | G | 1491 | * | C | 1499 | G | 1500 | cWW | cWW |
8 | IL_8VMA_003 | 8VMA | 0.6807 | 0 | Single bulged A | C | RNA (88-MER) | U | 46 | A | 47 | G | 48 | * | C | 78 | G | 79 | cWW | cWW |
9 | IL_5FJC_001 | 5FJC | 0.6026 | 0 | Single bulged A | A | SAM-I riboswitch | G | 13 | A | 14||A | G | 15 | * | C | 40 | C | 41 | cWW | cWW |
10 | IL_2OZB_001 | 2OZB | 0.8422 | 0 | Single bulged A | C | RNA comprising the 5' Stem-Loop RNA of U4snRNA | U | 24 | A | 25 | G | 26 | * | C | 47 | G | 48 | cWW | cWW |
11 | IL_8VTW_061 | 8VTW | 0.7990 | 0 | Single bulged A | 1A | LSU rRNA | U | 1489 | A | 1490 | G | 1491 | * | C | 1499 | G | 1500 | cWW | cWW |
12 | IL_4V9F_098 | 4V9F | 0.5844 | 0 | Single bulged A | 0 | LSU rRNA | C | 2895 | A | 2896 | C | 2897 | * | G | 2860 | G | 2861 | cWW | cWW |
13 | IL_8VTW_047 | 8VTW | 0.4536 | 0 | Single bulged A | 1A | LSU rRNA | G | 1219 | A | 1220 | C | 1221 | * | G | 1229 | C | 1230 | cWW | cWW |
14 | IL_5TBW_045 | 5TBW | 0.5557 | 0 | Single bulged A | 1 | LSU rRNA | U | 1074 | A | 1075 | C | 1076 | * | G | 1083 | A | 1084 | cWW | cWW |
15 | IL_4V88_441 | 4V88 | 0.5984 | 0 | Single bulged A | A6 | SSU rRNA | U | 1630 | A | 1631 | C | 1632 | * | G | 1146 | A | 1147 | cWW | cWW |
16 | IL_8C3A_447 | 8C3A | 0.5811 | 0 | Single bulged A | CM | SSU rRNA | U | 1617 | A | 1618 | C | 1619 | * | G | 1131 | A | 1132 | cWW | cWW |
17 | IL_5J7L_039 | 5J7L | 0.5551 | 0 | Single bulged A | AA | SSU rRNA | U | 1393 | A | 1394 | C | 1395 | * | G | 922 | A | 923 | cWW | cWW |
18 | IL_4LFB_035 | 4LFB | 0.5654 | 0 | Single bulged A | A | SSU rRNA | U | 1393 | A | 1394 | C | 1395 | * | G | 922 | A | 923 | cWW | cWW |
19 | IL_6CZR_147 | 6CZR | 0.5665 | 0 | Single bulged A | 1a | SSU rRNA | U | 1376 | A | 1377 | C | 1378 | * | G | 900 | A | 901 | cWW | cWW |
20 | IL_8C3A_122 | 8C3A | 0.6063 | 0 | Single bulged A | 1 | LSU rRNA | C | 2942 | A | 2943 | G | 2944 | * | C | 2932 | G | 2933 | cWW | cWW |
21 | IL_5TBW_113 | 5TBW | 0.5780 | 0 | Single bulged A | 1 | LSU rRNA | C | 2970 | A | 2971 | G | 2972 | * | C | 2960 | G | 2961 | cWW | cWW |
22 | IL_5J7L_344 | 5J7L | 0.4426 | 0 | Single bulged A | DA | LSU rRNA | C | 2601 | A | 2602 | G | 2603 | * | C | 2591 | G | 2592 | cWW | cWW |
23 | IL_4AOB_001 | 4AOB | 0.4255 | 0 | Single bulged A | A | SAM-I riboswitch | G | 13 | A | 14 | G | 15 | * | C | 40 | C | 41 | cWW | cWW |
24 | IL_4P3U_002 | 4P3U | 0.3879 | 0 | Single bulged A | B+A | RNA (23-mer) | A | 40 | A | 41 | G | 42 | * | C | 7 | U | 8 | ncWW | cWW |
25 | IL_3V7E_001 | 3V7E | 0.3736 | 0 | Single bulged A | C | SAM-I riboswitch | G | 13 | A | 14 | G | 15 | * | C | 40 | C | 41 | cWW | cWW |
26 | IL_8C3A_014 | 8C3A | 0.0000 | 0 | Single bulged A | 1+4 | LSU rRNA + 5.8S rRNA | G | 337 | A | 338 | C | 339 | * | G | 25 | U | 26 | cWW | cWW |
27 | IL_5TBW_013 | 5TBW | 0.1073 | 0 | Single bulged A | 1+4 | LSU rRNA + 5.8S rRNA | G | 337 | A | 338 | C | 339 | * | G | 25 | U | 26 | cWW | cWW |
28 | IL_5J7L_246 | 5J7L | 0.2390 | 0 | Single bulged A | DA | LSU rRNA | G | 442 | A | 443 | C | 444 | * | G | 36 | C | 37 | cWW | cWW |
29 | IL_4WF9_002 | 4WF9 | 0.2327 | 0 | Single bulged A | X | LSU rRNA | G | 488 | A | 489 | C | 490 | * | G | 36 | C | 37 | cWW | cWW |
30 | IL_7A0S_002 | 7A0S | 0.2884 | 0 | Single bulged A | X | LSU rRNA | G | 454 | A | 455 | C | 456 | * | G | 36 | C | 37 | cWW | cWW |
31 | IL_1NBS_005 | 1NBS | 0.2815 | 0 | Single bulged A | B | RNase P class B | G | 129 | A | 130 | C | 131 | * | G | 113 | C | 114 | cWW | cWW |
32 | IL_1I9X_001 | 1I9X | 0.2714 | 0 | Single bulged A | A+B | RNA (13-mer) | U | 4 | A | 5 | A | 6 | * | U | 9 | A | 10 | cWW | cWW |
33 | IL_1U9S_001 | 1U9S | 0.2849 | 0 | Single bulged A | A | RIBONUCLEASE P | G | 107 | A | 108 | C | 109 | * | G | 95 | C | 96 | cWW | cWW |
34 | IL_4V88_409 | 4V88 | 0.2235 | 0 | Single bulged A | A6 | SSU rRNA | A | 505 | A | 506 | U | 507 | * | A | 481 | U | 482 | cWW | cWW |
35 | IL_6MSF_001 | 6MSF | 0.4721 | 0 | Single bulged A | R | RNA (14-mer) | C | 2||||P_1 | A | 3||||P_1 | C | 4||||P_1 | * | G | 12||||P_1 | G | 13||||P_1 | cWW | cWW |
36 | IL_2C4Q_001 | 2C4Q | 0.4950 | 0 | Single bulged A | R | RNA (19-mer) | G | 5||||P_1 | A | 6||||P_1 | G | 7||||P_1 | * | C | 14||||P_1 | C | 15||||P_1 | cWW | cWW |
37 | IL_1GID_009 | 1GID | 0.3169 | 0 | Single bulged A | B | P4-P6 RNA RIBOZYME DOMAIN | C | 209 | A | 210 | C | 211 | * | G | 110 | G | 111 | cWW | cWW |
38 | IL_2VPL_002 | 2VPL | 0.4292 | 0 | Single bulged A | B | FRAGMENT OF MRNA FOR L1-OPERON CONTAINING REGULATOR L1-BINDING SITE | G | 28 | A | 29 | A | 30 | * | U | 16 | C | 17 | cWW | cWW |
39 | IL_4R4V_003 | 4R4V | 0.3673 | 0 | Single bulged A | A | VS ribozyme RNA | C | 651 | A | 652 | G | 653 | * | C | 766 | G | 767 | cWW | cWW |
40 | IL_4P3U_005 | 4P3U | 0.4671 | 0 | Single bulged A | A+B | RNA (23-mer) | A | 17 | A | 18 | G | 19 | * | C | 30 | U | 31 | cWW | cWW |
41 | IL_4P3U_008 | 4P3U | 0.4837 | 0 | Single bulged A | D+C | RNA (23-mer) | A | 40 | A | 41 | G | 42 | * | C | 7 | U | 8 | cWW | cWW |
42 | IL_4P3U_011 | 4P3U | 0.5170 | 0 | Single bulged A | C+D | RNA (23-mer) | A | 17 | A | 18 | G | 19 | * | C | 30 | U | 31 | cWW | cWW |
43 | IL_5TBW_018 | 5TBW | 0.4751 | 0 | Single bulged A | 1 | LSU rRNA | C | 577 | A | 578 | G | 579 | * | U | 512 | G | 513 | cWW | cWW |
44 | IL_8C3A_020 | 8C3A | 0.3939 | 0 | Single bulged A | 1 | LSU rRNA | C | 575 | A | 576 | G | 577 | * | C | 508 | G | 509 | cWW | cWW |
45 | IL_1I9X_002 | 1I9X | 0.3516 | 0 | Single bulged A | B+A | RNA (13-mer) | U | 4 | A | 5 | A | 6 | * | U | 9 | A | 10 | cWW | cWW |
46 | IL_1CSL_002 | 1CSL | 0.3636 | 0 | Single bulged A | B+A | RNA (15-mer) | G | 67 | A | 68 | C | 69 | * | G | 50 | C | 51 | cWW | cWW |
47 | IL_1DUQ_002 | 1DUQ | 0.3840 | 0 | Single bulged A | B+A | THE REV BINDING ELEMENT | G | 120 | A | 121 | C | 122 | * | G | 108 | C | 109 | cWW | cWW |
48 | IL_5AOX_002 | 5AOX | 0.4744 | 0 | Single bulged A | C | ALU JO CONSENSUS RNA | G | 56 | A | 57 | G | 58 | * | C | 108 | C | 109 | cWW | cWW |
49 | IL_4P43_002 | 4P43 | 0.4036 | 0 | Single bulged A | B+A | RNA (23-mer) | A | 40 | A | 41 | G | 42 | * | C | 7 | U | 8 | cWW | cWW |
50 | IL_4P43_003 | 4P43 | 0.3833 | 0 | Single bulged A | A+B | RNA (23-mer) | A | 17 | A | 18 | G | 19 | * | C | 30 | U | 31 | cWW | cWW |
51 | IL_3CGP_002 | 3CGP | 0.4831 | 0 | Single bulged A | B+A | RNA (13-mer) | U | 19 | A | 20 | A | 21 | * | PSU | 6 | A | 7 | cWW | cWW |
52 | IL_5TBW_024 | 5TBW | 0.4308 | 0 | Single bulged A | 1 | LSU rRNA | G | 779 | A | 780 | G | 781 | * | C | 752 | C | 753 | cWW | cWW |
53 | IL_8C3A_026 | 8C3A | 0.4209 | 0 | Single bulged A | 1 | LSU rRNA | G | 775 | A | 776 | G | 777 | * | C | 748 | C | 749 | cWW | cWW |
54 | IL_1JZV_002 | 1JZV | 0.4559 | 0 | Single bulged A | B+A | RNA (9-mer) | U | 12 | A | 13 | C | 14 | * | G | 4 | A | 5 | cWW | cWW |
55 | IL_4L8H_001 | 4L8H | 0.5627 | 0 | Single bulged A | R | RNA operator hairpin | C | 4 | A | 5 | U | 6 | * | A | 16 | G | 17 | cWW | cWW |
56 | IL_8VM9_003 | 8VM9 | 0.4072 | 0 | Single bulged A | R | RNA (85-MER) | U | 43 | A | 44 | G | 45 | * | C | 75 | G | 76 | cWW | cWW |
57 | IL_8UO6_001 | 8UO6 | 0.5632 | 0 | Single bulged A | A | HIV-1 Rev Response Element Stem-Loop II with tRNA scaffold | G | 60 | A | 61 | C | 62 | * | G | 42 | C | 43 | cWW | cWW |
58 | IL_4PHY_004 | 4PHY | 0.5892 | 0 | Single bulged A | A+B | RNA (26-MER) + RNA (20-mer) | C | 20 | A | 21 | C | 22 | * | G | 30 | G | 31 | ncWW | cWW |
59 | IL_7VTI_001 | 7VTI | 0.6224 | 0 | Single bulged A | B | crRNA | U | 31 | A | 32 | C | 33 | * | G | 4 | G | 5 | cWW | cWW |
60 | IL_8VTW_032 | 8VTW | 0.2920 | 0 | Single bulged A | 1A | LSU rRNA | U | 895 | A | 896 | C | 897 | * | G | 880 | G | 881 | cWW | cWW |
61 | IL_6XH2_002 | 6XH2 | 0.2443 | 0 | Single bulged A | D | TRANS-ACTIVATION RESPONSE ELEMENT | G | 34 | A | 35 | G | 36 | * | C | 29 | C | 30 | cWW | cWW |
62 | IL_7MKY_001 | 7MKY | 0.3492 | 0 | Single bulged A | A | RNA (66-MER) | G | 49 | A | 50 | U | 51 | * | A | 35 | C | 36 | cWW | cWW |
63 | IL_5WWT_001 | 5WWT | 0.3363 | 0 | Single bulged A | C | tRNA | G | 37 | A | 38 | U | 39 | * | A | 31 | C | 32 | cWW | cWW |
64 | IL_7DLZ_001 | 7DLZ | 0.4293 | 0 | Single bulged A | X | RNA (45-MER) | U | 6 | A | 7 | C | 8 | * | G | 39 | G | 40 | cWW | cWW |
65 | IL_8VMB_002 | 8VMB | 0.4446 | 0 | Single bulged A | R | RNA (83-MER) | U | 46 | A | 47 | G | 48 | * | C | 75 | G | 76 | cWW | cWW |
66 | IL_4V9F_002 | 4V9F | 0.3341 | 0 | Single bulged A | 0 | LSU rRNA | G | 448 | A | 449 | C | 450 | * | G | 33 | C | 34 | cWW | cWW |
67 | IL_4V88_399 | 4V88 | 0.3050 | 0 | Single bulged A | A6 | SSU rRNA | A | 265 | A | 266 | U | 267 | * | A | 288 | U | 289 | cWW | cWW |
68 | IL_4V9F_064 | 4V9F | 0.4183 | 0 | Single bulged A | 0 | LSU rRNA | C | 2021 | A | 2022 | G | 2023 | * | C | 1826 | G | 1827 | cWW | cWW |
69 | IL_8VTW_068 | 8VTW | 0.3918 | 0 | Single bulged A | 1A | LSU rRNA | G | 1980 | A | 1981 | C | 1982 | * | G | 1770 | C | 1771 | cWW | cWW |
70 | IL_8C3A_087 | 8C3A | 0.4048 | 0 | Single bulged A | 1 | LSU rRNA | G | 2301 | A | 2302 | G | 2303 | * | C | 2106 | U | 2107 | cWW | cWW |
71 | IL_5TBW_082 | 5TBW | 0.4123 | 0 | Single bulged A | 1 | LSU rRNA | G | 2323 | A | 2324 | G | 2325 | * | C | 2128 | U | 2129 | cWW | cWW |
72 | IL_5J7L_312 | 5J7L | 0.4348 | 0 | Single bulged A | DA | LSU rRNA | G | 1980 | A | 1981 | U | 1982 | * | G | 1770 | C | 1771 | cWW | cWW |
73 | IL_7A0S_064 | 7A0S | 0.4348 | 0 | Single bulged A | X | LSU rRNA | G | 1963 | A | 1964 | U | 1965 | * | G | 1761 | C | 1762 | cWW | cWW |
74 | IL_4WF9_068 | 4WF9 | 0.4433 | 0 | Single bulged A | X | LSU rRNA | G | 2007 | A | 2008 | U | 2009 | * | G | 1797 | C | 1798 | cWW | cWW |
75 | IL_8C3A_143 | 8C3A | 0.5977 | 0 | Single bulged A | 3 | 5S rRNA | A | 63 | A | 64 | G | 65 | * | C | 15 | U | 16 | cWW | cWW |
76 | IL_5TBW_372 | 5TBW | 0.5885 | 0 | Single bulged A | AS | 5S rRNA | A | 63 | A | 64 | G | 65 | * | C | 15 | U | 16 | cWW | cWW |
77 | IL_7A0S_012 | 7A0S | 0.5053 | 0 | Single bulged A | X | LSU rRNA | G | 600 | A | 601 | C | 602 | * | G | 678 | C | 679 | cWW | cWW |
78 | IL_3MJA_001 | 3MJA | 0.4134 | 0 | Single bulged A | B | Domain 3 of the cricket paralysis virus intergenic region IRES RNA | C | 6181 | A | 6182 | G | 6183 | * | C | 6194 | G | 6195 | cWW | cWW |
79 | IL_5TBW_060 | 5TBW | 0.5333 | 0 | Single bulged A | 1 | LSU rRNA | U | 1398 | A | 1399 | G | 1400 | * | C | 1411 | G | 1412 | cWW | cWW |
80 | IL_3CGS_002 | 3CGS | 0.4578 | 0 | Single bulged A | B+A | RNA (13-mer) | G | 20 | A | 21 | C | 22 | * | G | 5 | PSU | 6 | cWW | cWW |
81 | IL_3CGR_002 | 3CGR | 0.5614 | 0 | Single bulged A | B+A | RNA (13-mer) | A | 19 | A | 20 | C | 21 | * | G | 6 | PSU | 7 | cWW | cWW |
82 | IL_8VTW_058 | 8VTW | 0.7474 | 0 | Single bulged A | 1A | LSU rRNA | G | 1459 | A | 1460 | G | 1461 | * | C | 1450|||A | C | 1451 | cWW | cWW |
83 | IL_4V9F_025 | 4V9F | 0.5462 | 0 | Single bulged A | 0 | LSU rRNA | G | 856 | A | 857 | U | 858 | * | A | 788 | C | 789 | cWW | cWW |
84 | IL_5J7L_261 | 5J7L | 0.5611 | 0 | Single bulged A | DA | LSU rRNA | G | 763 | A | 764 | C | 765 | * | G | 697 | C | 698 | cWW | cWW |
85 | IL_4WF9_022 | 4WF9 | 0.5537 | 0 | Single bulged A | X | LSU rRNA | G | 808 | A | 809 | A | 810 | * | U | 742 | C | 743 | cWW | cWW |
86 | IL_8VTW_018 | 8VTW | 0.5476 | 0 | Single bulged A | 1A | LSU rRNA | G | 763 | A | 764 | G | 765 | * | C | 697 | C | 698 | cWW | cWW |
87 | IL_7A0S_016 | 7A0S | 0.5586 | 0 | Single bulged A | X | LSU rRNA | G | 776 | A | 777 | G | 778 | * | C | 710 | C | 711 | cWW | cWW |
88 | IL_8C3A_031 | 8C3A | 0.5083 | 0 | Single bulged A | 1 | LSU rRNA | A | 891 | A | 892 | U | 893 | * | A | 824 | U | 825 | cWW | cWW |
89 | IL_8C3A_019 | 8C3A | 0.6258 | 0 | Single bulged A | 1 | LSU rRNA | G | 505 | A | 506 | G | 507 | * | C | 578 | C | 579 | cWW | cWW |
90 | IL_4LGT_002 | 4LGT | 0.6804 | 0 | Single bulged A | E | stem-loop of 23S rRNA | C | 2601 | A | 2602 | G | 2603 | * | C | 2591 | G | 2592 | cWW | cWW |
91 | IL_8X5V_002 | 8X5V | 0.7942 | 0 | Single bulged A | B | RNA (110-mer) | G | 61 | A | 62 | C | 63 | * | G | 55 | C | 56 | cWW | cWW |
92 | IL_1MFQ_005 | 1MFQ | 0.7227 | 0 | Single bulged A | A | SRP RNA | G | 175 | A | 176 | G | 177 | * | C | 220 | C | 221 | cWW | cWW |
93 | IL_8UIW_001 | 8UIW | 0.6123 | 0 | Single bulged A | N | yjdF RNA (R. gauvreauii) | G | 44 | A | 45 | U | 46 | * | A | 63 | C | 64 | cWW | cWW |
94 | IL_6D3P_004 | 6D3P | 0.7760 | 0 | Single bulged A | A | RNA (45-MER) | G | 27 | A | 28 | G | 29 | * | C | 12 | C | 13 | cWW | cWW |
95 | IL_7JJU_002 | 7JJU | 0.7965 | 0 | Single bulged A | A | PLRV_xrRNA | C | 31 | A | 32 | U | 33 | * | A | 12 | G | 13 | cWW | cWW |
96 | IL_7JJU_004 | 7JJU | 0.7968 | 0 | Single bulged A | B | PLRV_xrRNA | C | 31 | A | 32 | U | 33 | * | A | 12 | G | 13 | cWW | cWW |
97 | IL_6CYT_001 | 6CYT | 0.8957 | 0 | Single bulged A | N | RNA (17-mer) | G | 34 | A | 35 | G | 36 | * | C | 29 | C | 30 | cWW | cWW |
98 | IL_7KGA_002 | 7KGA | 0.8578 | 0 | Single bulged A | A | Flavivirus DB element | U | 39 | A | 40 | G | 41 | * | C | 14 | A | 15 | cWW | cWW |
99 | IL_8XZL_003 | 8XZL | 1.2018 | 0 | Single bulged A | A | RNA (53-MER) | G | 32 | A | 33 | C | 34 | * | G | 27 | C | 28 | cWW | cWW |
100 | IL_5TBW_058 | 5TBW | 1.0802 | 0 | Single bulged A | 1 | LSU rRNA | C | 1385 | A | 1386 | G | 1387 | * | C | 1420 | G | 1421 | cWW | cWW |
101 | IL_8C3A_062 | 8C3A | 1.0093 | 0 | Single bulged A | 1 | LSU rRNA | C | 1381 | A | 1382 | G | 1383 | * | C | 1416 | G | 1417 | cWW | cWW |
102 | IL_3OXE_001 | 3OXE | 0.8209 | 0 | Single bulged A | A | domain II of glycine riboswitch | G | 12 | A | 13 | A | 14 | * | U | 27 | C | 28 | cWW | cWW |
103 | IL_5J7L_049 | 5J7L | 1.0152 | 0 | Single bulged A | AA | SSU rRNA | C | 1195 | A | 1196 | A | 1197 | * | U | 1060 | G | 1061 | cWW | cWW |
104 | IL_8C3A_418 | 8C3A | 0.8602 | 0 | Single bulged A | CM | SSU rRNA | A | 503 | A | 504 | U | 505 | * | A | 479 | U | 480 | cWW | cWW |
105 | IL_8C3A_458 | 8C3A | 0.7744 | 0 | Single bulged A | CM | SSU rRNA | C | 1412 | A | 1413 | G | 1414 | * | C | 1265 | G | 1266 | cWW | cWW |
106 | IL_4V88_452 | 4V88 | 0.8178 | 0 | Single bulged A | A6 | SSU rRNA | C | 1426 | A | 1427 | G | 1428 | * | C | 1280 | G | 1281 | cWW | cWW |
107 | IL_4WF9_006 | 4WF9 | 0.5730 | 0 | Single bulged A | X | LSU rRNA | C | 175 | A | 176 | G | 177 | * | C | 152 | G | 153 | cWW | cWW |
108 | IL_2QUX_002 | 2QUX | 0.6541 | 0 | Single bulged A | F | RNA (25-MER) | C | 5 | A | 6 | G | 7 | * | C | 20 | G | 21 | cWW | cWW |
109 | IL_6WPI_001 | 6WPI | 0.5190 | 0 | Single bulged A | B | RNA (47-MER) | G | 11 | A | 12 | A | 13 | * | U | 41 | C | 42 | cWW | cWW |
110 | IL_1U63_004 | 1U63 | 0.5075 | 0 | Single bulged A | D | 49 NT FRAGMENT OF MRNA FOR L1 | G | 28 | A | 29 | A | 30 | * | U | 16 | C | 17 | cWW | cWW |
111 | IL_5TBW_123 | 5TBW | 0.6849 | 0 | Single bulged A | 1 | LSU rRNA | G | 3177 | A | 3178 | U | 3179 | * | A | 3210 | C | 3211 | cWW | cWW |
112 | IL_8C3A_131 | 8C3A | 0.5957 | 0 | Single bulged A | 1 | LSU rRNA | G | 3147 | A | 3148 | U | 3149 | * | A | 3175 | C | 3176 | cWW | cWW |
113 | IL_4R4V_004 | 4R4V | 0.5853 | 0 | Single bulged A | A | VS ribozyme RNA | U | 712 | A | 713 | G | 714 | * | C | 660 | A | 661 | cWW | cWW |
114 | IL_6CZR_114 | 6CZR | 1.2006 | 0 | Single bulged A | 1a | SSU rRNA | G | 392 | A | 393 | C | 394 | * | G | 45 | U | 46 | cWW | cWW |
115 | IL_4LFB_002 | 4LFB | 1.2472 | 0 | Single bulged A | A | SSU rRNA | G | 396 | A | 397 | C | 398 | * | G | 44 | U | 45 | cWW | cWW |
116 | IL_5J7L_002 | 5J7L | 1.2106 | 0 | Single bulged A | AA | SSU rRNA | C | 396 | A | 397 | U | 398 | * | A | 44 | G | 45 | cWW | cWW |
117 | IL_4P97_002 | 4P97 | 1.1973 | 0 | Single bulged A | B+A | RNA (11-mer) | G | 38 | A | 39 | G | 40 | * | C | 12 | C | 13 | cWW | cWW |
118 | IL_5CNR_002 | 5CNR | 1.1625 | 0 | Single bulged A | B+A | RNA (11-mer) | G | 38 | A | 39 | G | 40 | * | C | 12 | C | 13 | cWW | cWW |
119 | IL_4PHY_002 | 4PHY | 1.1706 | 0 | Single bulged A | B+A | RNA (20-mer) | G | 38 | A | 39 | G | 40 | * | C | 12 | C | 13 | cWW | cWW |
120 | IL_5J7L_355 | 5J7L | 1.5521 | 0 | Major groove intercalation | DB | 5S rRNA | U | 65 | A | 66 | G | 67 | * | C | 17 | G | 18 | cWW | cWW |
121 | IL_7JNH_003 | 7JNH | 1.5973 | 0 | Major groove intercalation | B | Core double ENE RNA (Xtal construct) from Oryza sativa transposon | U | 55 | A | 56 | C | 57 | * | G | 35 | G | 36 | cWW | cWW |
122 | IL_4WF9_112 | 4WF9 | 1.6416 | 0 | Major groove intercalation | Y | 5S rRNA | U | 63 | A | 64 | G | 65 | * | C | 15 | A | 16 | cWW | cWW |
123 | IL_8VTW_110 | 8VTW | 1.6514 | 0 | Major groove intercalation | 1B | 5S rRNA | C | 65 | A | 66 | G | 67 | * | C | 17 | G | 18 | cWW | cWW |
124 | IL_4V9F_101 | 4V9F | 1.6774 | 0 | Major groove intercalation | 9 | 5S rRNA | C | 64 | A | 65 | G | 66 | * | C | 15 | G | 16 | cWW | cWW |
125 | IL_7DLZ_002 | 7DLZ | 1.8352 | 0 | Major groove intercalation | X | RNA (45-MER) | U | 9 | A | 10 | C | 11 | * | G | 37 | G | 38 | cWW | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
CAG*CG | 18 |
GAG*CC | 18 |
GAC*GC | 15 |
UAC*GA | 8 |
UAG*CG | 8 |
AAG*CU | 8 |
CAC*GG | 6 |
GAU*AC | 6 |
GAA*UC | 5 |
UAC*GG | 5 |
UAG*CA | 4 |
GAC*GU | 4 |
AAU*AU | 4 |
CAU*AG | 4 |
GAU*GC | 3 |
UAA*UA | 2 |
GAG*CU | 2 |
CAG*UG | 1 |
UAA*(PSU)A | 1 |
GAC*G(PSU) | 1 |
AAC*G(PSU) | 1 |
CAA*UG | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
A* | 125 |
Release history
Release | 3.88 |
---|---|
Date | 2024-09-11 |
Status | Updated, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Single bulged A (119)
- Major groove intercalation (6)
- Basepair signature
- cWW-L-cWW
- Heat map statistics
- Min 0.03 | Avg 0.84 | Max 2.16
Coloring options: