Motif IL_49445.1 Version IL_49445.1 of this group appears in releases 1.15 to 1.15
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 10 | 1-10 | 2-9 | 3-7 | 3-8 | 4-7 | 5-6 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4BPP_028 | 4BPP | 0.0000 | 0 | A | 18S RRNA | G | 509 | A | 510 | A | 511 | C | 512 | A | 513 | * | U | 525 | U | 526 | A | 527 | G | 528 | C | 529 | cWW | cWW | tSH | ntHS | cWW | |
| 2 | IL_4CUV_046 | 4CUV | 0.6422 | 0 | 1 | 25S RRNA | G | 1005 | A | 1006 | U | 1007 | U | 1008 | A | 1009 | * | U | 1041 | U | 1042 | C | 1043 | U | 1044 | C | 1045 | cWW | cWW | ncSW | cWw | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAACA*UUAGC | 1 |
| GAUUA*UUCUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AAC*UAG | 1 |
| AUU*UCU | 1 |
Release history
| Release | 1.15 |
|---|---|
| Date | 2014-06-20 |
| Status | New id, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_49445.1 | Only in the parent motif |
|---|---|---|---|
| IL_87904.6 Compare | IL_4BPP_028 | IL_4CUV_046 | IL_2AW7_058, IL_4NVV_091, IL_1S72_083, IL_4A1B_110, IL_4IOA_070, IL_2QWY_001, IL_2QBG_068, IL_1S72_028, IL_2QBG_019, IL_1S72_021, IL_4NVV_023, IL_1VW3_083, IL_3IWN_002, IL_2A64_005, IL_2A64_006, IL_4BPP_090, IL_2QBG_024, IL_1U6B_002, IL_2QBG_094, IL_3U5F_091, IL_4IOA_089, IL_4FAW_002, IL_3U5H_112, IL_3U5H_032, IL_3UCZ_001, IL_4A1B_125, IL_3U5H_075, IL_4IOA_012, IL_4NVV_075, IL_4NVV_017, IL_3DHS_004 |
Children motifs
| Child motif | Common motif instances | Only in IL_49445.1 | Only in the child motif |
|---|---|---|---|
| IL_81965.1 Compare | IL_4BPP_028 | IL_4CUV_046 | IL_2AW7_058, IL_4QCN_092, IL_1S72_083, IL_4A1B_110, IL_4IOA_070, IL_1VX2_035, IL_2QWY_001, IL_2QBG_068, IL_1S72_028, IL_1VX2_078, IL_1S72_021, IL_1VX6_038, IL_4QCN_021, IL_3J7A_061, IL_4BPP_090, IL_4CUX_047, IL_2A64_005, IL_1VW3_083, IL_2A64_006, IL_1VX6_113, IL_3IWN_002, IL_2QBG_024, IL_4CUV_116, IL_1U6B_002, IL_2QBG_094, IL_3J7A_080, IL_4CUV_073, IL_3U5F_091, IL_4IOA_089, IL_4FAW_002, IL_3U5H_112, IL_3U5H_032, IL_3UCZ_001, IL_4A1B_125, IL_3U5H_075, IL_1VWW_092, IL_1VWW_098, IL_1VWW_077, IL_4QCN_071, IL_4QCN_015, IL_4CUX_077, IL_1VX6_072, IL_4CUX_006 |
| IL_00519.1 Compare | IL_4CUV_046 | IL_4BPP_028 |
- Annotations
-
- (2)
- Basepair signature
- cWW-L-R-R-R-L-L-cWW
- Heat map statistics
- Min 0.64 | Avg 0.32 | Max 0.64
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