#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 5 6 7break 8 9 10 11 12 131-132-123-114-55-106-97-8
1 IL_1S72_0491S720.196707x6 Sarcin-Ricin; G-bulge (H)0 LSU rRNAA1367U1368A1369G1370U1371A1372G1373*U2052G2053A2054A2055C2056U2057cWWtSHtHHcSHtWHtHScWW
2 IL_4A1B_0644A1B0.23240126S RRNAG1470U1471A1472G1473U1474A1475G1476*C2349G2350A2351A2352C2353C2354cWWntSHtHHcSHtWHtHScWW
3 IL_3U5H_0663U5H0.22740525S rRNAG1444U1445A1446G1447U1448A1449G1450*C2354G2355A2356A2357A2358C2359cWWtSHtHHcSHtWHtHScWW
4 IL_1S72_0901S720.197500 LSU rRNAA2689U2690A2691G2692U2693A2694C2695*G2700G2701A2702A2703C2704U2705cWWtSHtHHcSHtWHtHScWW
5 IL_1NBS_0071NBS0.209707x6 Sarcin-Ricin; G-bulgeB RNase P class BU165G166A167G168U169A170U171*A138A139A140A141A142A143cWWntSHtHHcSHntWHtHScWW
6 IL_1S72_1031S720.190707x6 Sarcin-Ricin; G-bulge (H)9 5S rRNAG75G76A77G78U79A80C81*G101G102A103A104A105C106cWWtSHtHHcSHtWHtHScWW
7 IL_2QBG_0122QBG0.00000B23S rRNAC239C240A241G242U243A244G245*C253G254A255A256C257G258cWWtSHtHHcSHtWHtHScWW
8 IL_1S72_0071S720.147807x6 Sarcin-Ricin; G-bulge (H)0 LSU rRNAU210U211A212G213U214A215A216*U224G225A226A227C228G229cWWtSHtHHcSHtWHtHScWW
9 IL_3V2F_0073V2F0.16700A23S Ribosomal RNAU239G240A241G242U243A244G245*C253G254A255A256A257G258cWWtSHtHHcSHtWHtHScWW
10 IL_3DVZ_0013DVZ0.27390ASarcin/Ricin Domain from E. Coli 23 S rRNAC2652U2653A2654G2655U2656A2657C2658*G2663G2664A2665C2666C2667G2668cWWcSHtWHtHScWW
11 IL_1S72_0201S720.267907x6 Sarcin-Ricin; G-bulge (H)0 LSU rRNAC585C586A587G588U589A590A591*U567G568A569C570C571G572cWWncWBcSHtWHtHScWW
12 IL_4IOA_0964IOA0.31220Sarcin-Ricin target in LSU H95; G-bulgeX LSU rRNAC2631U2632A2633G2634U2635A2636C2637*G2642G2643A2644C2645C2646G2647cWWcSHtWHtHScWW
13 IL_3V2F_0993V2F0.33540A23S Ribosomal RNAC2652U2653A2654G2655U2656A2657C2658*G2663G2664A2665C2666C2667G2668cWWcSHtWHtHScWW

3D structures

Complete motif including flanking bases
SequenceCounts
CUAGUAC*GGACCG3
AUAGUAG*UGAACU1
GUAGUAG*CGAACC1
GUAGUAG*CGAAAC1
AUAGUAC*GGAACU1
UGAGUAU*AAAAAA1
GGAGUAC*GGAAAC1
CCAGUAG*CGAACG1
UUAGUAA*UGAACG1
UGAGUAG*CGAAAG1
CCAGUAA*UGACCG1
Non-Watson-Crick part of the motif
SequenceCounts
UAGUA*GAAC4
UAGUA*GACC3
GAGUA*GAAA2
UAGUA*GAAA1
GAGUA*AAAA1
CAGUA*GAAC1
CAGUA*GACC1

Release history

Release1.51.61.71.81.91.101.111.121.13
Date2013-08-032013-08-312013-09-282013-11-052013-12-072014-01-042014-02-012014-03-012014-03-29
StatusUpdated, 1 parentExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

Children motifs

Child motifCommon motif instancesOnly in IL_49493.4Only in the child motif
IL_49493.5
Compare
IL_1S72_103, IL_3U5H_066, IL_3DVZ_001, IL_1S72_007, IL_1S72_020, IL_1S72_049, IL_1S72_090, IL_4A1B_064, IL_2QBG_012, IL_4IOA_096, IL_1NBS_007IL_3V2F_099, IL_3V2F_007IL_1VW3_084, IL_4NVV_099, IL_4NVV_007, IL_1VW3_013
Annotations
  • (7)
  • 7x6 Sarcin-Ricin; G-bulge (H) (4)
  • 7x6 Sarcin-Ricin; G-bulge (1)
  • Sarcin-Ricin target in LSU H95; G-bulge (1)
  • Basepair signature
    cWW-tSH-tHH-cSH-tWH-tHS-cWW
    Heat map statistics
    Min 0.09 | Avg 0.24 | Max 0.43
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