Motif IL_62873.1 Version IL_62873.1 of this group appears in releases 0.5 to 0.5
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 1-9 | 2-8 | 4-7 | 5-6 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3BNT_002 | 3BNT | 0.8102 | 0 | Tandem non-canonical cWW pairs | A | A site of human mitochondrial ribosome | G | 14||||4_665 | C | 15||||4_665 | A | 16||||4_665 | A | 17||||4_665 | G | 18||||4_665 | * | C | 6 | A | 7 | C | 8 | C | 9 | cWW | ncWB | cWw | cWW |
| 2 | IL_1Y0Q_002 | 1Y0Q | 0.7913 | 0 | A | Group I catalytic intron | U | 92 | A | 93 | A | 94 | G | 95 | C | 96 | * | G | 111 | A | 112 | A | 113 | A | 114 | ncWW | cWW | |||
| 3 | IL_3BNQ_008 | 3BNQ | 0.8018 | 0 | D+C | A site of human mitochondrial ribosome, B chain | G | 13 | C | 14 | A | 15 | A | 16 | G | 17 | * | C | 7 | A | 8 | C | 9 | C | 10 | cWW | ncWw | cWw | cWW | |
| 4 | IL_3BNQ_002 | 3BNQ | 0.8018 | 0 | B+A | A site of human mitochondrial ribosome, A chain | G | 15 | C | 16 | A | 17 | A | 18 | G | 19 | * | C | 7 | A | 8 | C | 9 | C | 10 | cWW | ncWB | cWw | cWW | |
| 5 | IL_3BNT_005 | 3BNT | 0.8204 | 0 | Tandem non-canonical cWW pairs | A | A site of human mitochondrial ribosome | G | 14 | C | 15 | A | 16 | A | 17 | G | 18 | * | C | 6||||4_665 | A | 7||||4_665 | C | 8||||4_665 | C | 9||||4_665 | cWW | ncWB | cWw | cWW |
| 6 | IL_3O58_027 | 3O58 | 0.7013 | 1 | 1 | 25S ribosomal RNA | G | 510 | G | 511 | U | 512 | G | 513 | G | 514 | * | C | 576 | C | 577 | G | 579 | C | 580 | ncWW | ncWW | cWW | ||
| 7 | IL_1U6B_004 | 1U6B | 0.0000 | 0 | B | 197-MER | C | 96 | A | 97 | A | 98 | G | 99 | C | 100 | * | G | 119 | A | 120 | A | 121 | G | 122 | cWW | cWW | cWW | ||
| 8 | IL_2XZM_039 | 2XZM | 0.3549 | 0 | A | 18S RRNA | A | 688 | A | 689 | A | 690 | A | 691 | U | 692 | * | A | 710 | C | 711 | U | 712 | U | 713 | cWW | ncWW | ncWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GCAAG*CACC | 4 |
| UAAGC*GAAA | 1 |
| GGUGG*CCAGC | 1 |
| CAAGC*GAAG | 1 |
| AAAAU*ACUU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CAA*AC | 4 |
| AAG*AA | 2 |
| GUG*CAG | 1 |
| AAA*CU | 1 |
Release history
| Release | 0.5 |
|---|---|
| Date | 2011-12-08 |
| Status | New id, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_62873.1 | Only in the parent motif |
|---|---|---|---|
| IL_75673.1 Compare | IL_3BNQ_008, IL_3BNQ_002 | IL_1U6B_004, IL_1Y0Q_002, IL_2XZM_039, IL_3BNT_005, IL_3BNT_002, IL_3O58_027 | IL_1FJG_008, IL_2O3V_002, IL_1FJG_055 |
| IL_10358.1 Compare | IL_3BNT_005, IL_3BNT_002 | IL_1U6B_004, IL_2XZM_039, IL_3BNQ_008, IL_1Y0Q_002, IL_3BNQ_002, IL_3O58_027 | IL_3LOA_001, IL_3G78_010, IL_1GID_010, IL_1GID_003 |
Children motifs
| Child motif | Common motif instances | Only in IL_62873.1 | Only in the child motif |
|---|---|---|---|
| IL_31555.1 Compare | IL_3BNT_005, IL_2XZM_039, IL_3BNQ_002, IL_3BNQ_008, IL_3BNT_002 | IL_1Y0Q_002, IL_1U6B_004, IL_3O58_027 | IL_3LOA_001, IL_3G78_010, IL_4A1B_026, IL_1GID_010, IL_1X8W_002, IL_4A1B_022, IL_3FS0_001, IL_2XZM_041, IL_3FTM_002, IL_3FTM_001, IL_4A1B_120, IL_1GID_003 |
| IL_52173.1 Compare | IL_1U6B_004 | IL_3BNQ_008, IL_1Y0Q_002, IL_2XZM_039, IL_3BNT_005, IL_3BNT_002, IL_3BNQ_002, IL_3O58_027 | IL_1MFQ_001, IL_1J2B_001 |
| IL_25307.1 Compare | IL_1Y0Q_002 | IL_3BNQ_008, IL_1U6B_004, IL_2XZM_039, IL_3BNT_005, IL_3BNT_002, IL_3BNQ_002, IL_3O58_027 |
- Annotations
-
- (6)
- Tandem non-canonical cWW pairs (2)
- Basepair signature
- Heat map statistics
- Min 0.00 | Avg 0.57 | Max 0.93
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