#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 5 6 7break 8 9 10 11 121-122-114-115-106-97-8
1 IL_5J7L_3305J7L0.45651Kink-turnDA LSU rRNAC2129U2130U2131G2133A2134A2135G2136*U2155G2156G2157A2158G2159cWWncSWcWW
2 IL_7JRS_0037JRS0.19601Kink-turnBRNA 3D nanocageC12G13A14G16A17A18C19*G120G121G122A123G124cWWntsStHStHScWW
3 IL_4KQY_0024KQY0.20451Kink-turnA SAM-I riboswitchC31G32A33G35A36A37G38*C17A18G19A20G21cWWtsSntSHntHScWW
4 IL_5Y7M_0085Y7M0.16821Kink-turnDRNA (52-MER)A17G18A19G21A22U23C24*G29G30G31A32U33cWWtsStSHntHSntHScWW
5 IL_7JRS_0027JRS0.14191Kink-turnARNA 3D nanocageC77G78A79G81A82A83C84*G55G56G57A58G59cWWntsStSHtHStHScWW
6 IL_7JRR_0017JRR0.14351Kink-turnARNA (50-MER)C23G24A25G27A28A29C30*G5G6G7A8G9cWWntsStSHtHStHScWW
7 IL_5FJ4_0025FJ40.14751Kink-turnHHMKT-7C26G27A28G30A31A32C33*G3G4G5A6G7cWWntsStSHtHStHScWW
8 IL_4BW0_0014BW00.18791Kink-turnAHMKT-7C16G17A18G20A21A22C23*G3G4G5A6G7cWWntsStSHtHStHScWW
9 IL_4C4W_0024C4W0.20531Kink-turnHTSKT-23U26G27A28G30A31C32C33*G3C4A5A6G7cWWntsStSHtHSncBWcWW
10 IL_7JRS_0067JRS0.17171Kink-turnBRNA 3D nanocageC77G78A79G81A82A83C84*G55G56G57A58G59ncWWntsStSHtHStHScWW
11 IL_7JRS_0077JRS0.15991Kink-turnARNA 3D nanocageC12G13A14G16A17A18C19*G120G121G122A123G124cWWntsStSHtHStHScWW
12 IL_7EFG_0017EFG0.08821Kink-turnARNA (19-mer)C3G4A5G7A8A9C10*G13||||9_767G14||||9_767G15||||9_767A16||||9_767G17||||9_767cWWntsStSHtHStHScWW
13 IL_7EFG_0027EFG0.08821Kink-turnARNA (19-mer)C3||||9_767G4||||9_767A5||||9_767G7||||9_767A8||||9_767A9||||9_767C10||||9_767*G13G14G15A16G17cWWntsStSHtHStHScWW
14 IL_4CS1_0024CS10.08851Kink-turnA5'-(*GP*GP*CP*GP*AP*AP*GP*AP*AP*CP*CP*GP*GP*GP *GP*AP*GP*CP*CP)-3'C3||||9_769G4||||9_769A5||||9_769G7||||9_769A8||||9_769A9||||9_769C10||||9_769*G13G14G15A16G17cWWntsStSHtHStHScWW
15 IL_4CS1_0014CS10.08851Kink-turnA5'-(*GP*GP*CP*GP*AP*AP*GP*AP*AP*CP*CP*GP*GP*GP *GP*AP*GP*CP*CP)-3'C3G4A5G7A8A9C10*G13||||9_769G14||||9_769G15||||9_769A16||||9_769G17||||9_769cWWntsStSHtHStHScWW
16 IL_5G4T_0025G4T0.00001Kink-turnA+BHMKT-7C3G4A5G7A8A9C10*G13G14G15A16G17cWWntsStSHtHStHScWW
17 IL_5FJC_0025FJC0.11701Kink-turnA SAM-I riboswitchC31G32A33||AG35A36A37C38*G17G18G19A20G21cWWtsStSHtHStHScWW
18 IL_3U4M_0043U4M0.13651Kink-turnB LSU rRNAC2129U2130G2131G2133A2134A2135C2136*G2155G2156G2157A2158G2159cWWtsStSHtHStHScWW
19 IL_8VTW_0468VTW0.12891Kink-turn1A LSU rRNAC1208G1209A1210G1212A1213A1214G1215*U1234G1235G1236A1237G1238cWWntsStSHtHStHScWW
20 IL_5J7L_2885J7L0.13521Kink-turnDA LSU rRNAC1208U1209G1210G1212A1213A1214G1215*U1234G1235G1236A1237G1238cWWtsStSHtHStHScWW
21 IL_4V9F_0484V9F0.14991Kink-turn0 LSU rRNAG1312A1313U1314G1316A1317A1318G1319*U1338G1339G1340A1341C1342cWWntsStSHtHStHScWW
22 IL_7EAG_0017EAG0.15841Kink-turnA+BRNA (19-mer)C3U4A5G7A8A9G10*U13G14G15A16G17cWWtsStSHtHStHScWW
23 IL_7EAG_0027EAG0.17381Kink-turnC+DRNA (19-mer)C3U4A5G7A8A9G10*U13G14G15A16G17cWWntsStSHtHStHScWW
24 IL_7EAG_0047EAG0.16631Kink-turnE+FRNA (19-mer)C3U4A5G7A8A9G10*U13G14G15A16G17cWWntsSntSHtHStHScWW
25 IL_7EAG_0037EAG0.15871Kink-turnD+CRNA (19-mer)C3U4A5G7A8A9G10*U13G14G15A16G17cWWntSHntHStHScWW
26 IL_7EAG_0057EAG0.15301Kink-turnF+ERNA (19-mer)C3U4A5G7A8A9G10*U13G14G15A16G17cWWntSHntHStHScWW
27 IL_3V7E_0023V7E0.16101Kink-turnC SAM-I riboswitchC31G32A33G35A36A37A38*U17G18G19A20G21cWWtsStSHtHScWW
28 IL_5TBW_0595TBW0.22641Kink-turn1 LSU rRNAU1388G1389A1390G1392A1393A1394G1395*U1415C1416G1417A1418A1419cWWtsStSHtHStHScWW
29 IL_8C3A_0638C3A0.22901Kink-turn1 LSU rRNAU1384G1385A1386G1388A1389A1390G1391*U1411C1412G1413A1414A1415cWWntsStSHtHStHScWW
30 IL_7A0S_0437A0S0.19041Kink-turnX LSU rRNAC1221G1222G1223G1225A1226A1227G1228*U1247G1248G1249A1250G1251cWWntsStSHntHStHScWW
31 IL_4WF9_0464WF90.19071Kink-turnX LSU rRNAC1246G1247U1248G1250A1251A1252G1253*U1272G1273G1274A1275G1276cWWntHStHScWW

3D structures

Complete motif including flanking bases
SequenceCounts
CGAAGAAC*GGGAG13
CUAUGAAG*UGGAG5
UGACGAAG*UCGAA2
CUUUGAAG*UGGAG1
CGACGAAG*CAGAG1
AGACGAUC*GGGAU1
UGAUGACC*GCAAG1
CUGUGAAC*GGGAG1
CGAUGAAG*UGGAG1
CUGCGAAG*UGGAG1
GAUGGAAG*UGGAC1
CGAUGAAA*UGGAG1
CGGAGAAG*UGGAG1
CGUUGAAG*UGGAG1
Non-Watson-Crick part of the motif
SequenceCounts
GAAGAA*GGA13
UAUGAA*GGA5
GAUGAA*GGA2
GACGAA*CGA2
UUUGAA*GGA1
GACGAA*AGA1
GACGAU*GGA1
GAUGAC*CAA1
UGUGAA*GGA1
UGCGAA*GGA1
AUGGAA*GGA1
GGAGAA*GGA1
GUUGAA*GGA1

Release history

Release3.88
Date2024-09-11
StatusUpdated, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Kink-turn (31)
  • Basepair signature
    cWW-tSS-tSH-L-tHS-tHS-cWW
    Heat map statistics
    Min 0.00 | Avg 0.21 | Max 0.54
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