IL_70923.8

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4		5		6		7	break		8		9		10		11		12	1-12	2-11	4-11	5-10	6-9	7-8
1	IL_5J7L_330	5J7L	0.4565	1	Kink-turn	DA	LSU rRNA	C	2129	U	2130	U	2131	G	2133	A	2134	A	2135	G	2136	*	U	2155	G	2156	G	2157	A	2158	G	2159	cWW		ncSW			cWW
2	IL_7JRS_003	7JRS	0.1960	1	Kink-turn	B	RNA 3D nanocage	C	12	G	13	A	14	G	16	A	17	A	18	C	19	*	G	120	G	121	G	122	A	123	G	124	cWW	ntsS		tHS	tHS	cWW
3	IL_4KQY_002	4KQY	0.2045	1	Kink-turn	A	SAM-I riboswitch	C	31	G	32	A	33	G	35	A	36	A	37	G	38	*	C	17	A	18	G	19	A	20	G	21	cWW	tsS	ntSH	ntHS		cWW
4	IL_5Y7M_008	5Y7M	0.1682	1	Kink-turn	D	RNA (52-MER)	A	17	G	18	A	19	G	21	A	22	U	23	C	24	*	G	29	G	30	G	31	A	32	U	33	cWW	tsS	tSH	ntHS	ntHS	cWW
5	IL_7JRS_002	7JRS	0.1419	1	Kink-turn	A	RNA 3D nanocage	C	77	G	78	A	79	G	81	A	82	A	83	C	84	*	G	55	G	56	G	57	A	58	G	59	cWW	ntsS	tSH	tHS	tHS	cWW
6	IL_7JRR_001	7JRR	0.1435	1	Kink-turn	A	RNA (50-MER)	C	23	G	24	A	25	G	27	A	28	A	29	C	30	*	G	5	G	6	G	7	A	8	G	9	cWW	ntsS	tSH	tHS	tHS	cWW
7	IL_4BW0_001	4BW0	0.1879	1	Kink-turn	A	HMKT-7	C	16	G	17	A	18	G	20	A	21	A	22	C	23	*	G	3	G	4	G	5	A	6	G	7	cWW	ntsS	tSH	tHS	tHS	cWW
8	IL_5FJ4_002	5FJ4	0.1475	1	Kink-turn	H	HMKT-7	C	26	G	27	A	28	G	30	A	31	A	32	C	33	*	G	3	G	4	G	5	A	6	G	7	cWW	ntsS	tSH	tHS	tHS	cWW
9	IL_6Q8U_002	6Q8U	0.1304	1		B+A	RNA (21-mer)	C	4	G	5	A	6	G	8	6MZ	9	A	10	C	11	*	G	14	G	15	G	16	A	17	G	18	cWW	ntsS	tSH	ntHS	tHS	cWW
10	IL_6Q8U_001	6Q8U	0.1370	1		A+B	RNA (21-mer)	C	4	G	5	A	6	G	8	6MZ	9	A	10	C	11	*	G	14	G	15	G	16	A	17	G	18	cWW	ntsS	tSH	ntHS	tHS	cWW
11	IL_4C4W_002	4C4W	0.2053	1	Kink-turn	H	TSKT-23	U	26	G	27	A	28	G	30	A	31	C	32	C	33	*	G	3	C	4	A	5	A	6	G	7	cWW	ntsS	tSH	tHS	ncBW	cWW
12	IL_7JRS_006	7JRS	0.1717	1	Kink-turn	B	RNA 3D nanocage	C	77	G	78	A	79	G	81	A	82	A	83	C	84	*	G	55	G	56	G	57	A	58	G	59	ncWW	ntsS	tSH	tHS	tHS	cWW
13	IL_7JRS_007	7JRS	0.1599	1	Kink-turn	A	RNA 3D nanocage	C	12	G	13	A	14	G	16	A	17	A	18	C	19	*	G	120	G	121	G	122	A	123	G	124	cWW	ntsS	tSH	tHS	tHS	cWW
14	IL_6Q8V_001	6Q8V	0.0941	1	Kink-turn	A	RNA (19-mer)	C	3	G	4	A	5	G	7	6MZ	8	A	9	C	10	*	G	13	G	14	G	15	A	16	G	17	cWW	ntsS	tSH	tHS	tHS	cWW
15	IL_5G4T_002	5G4T	0.0000	1	Kink-turn	A+B	HMKT-7	C	3	G	4	A	5	G	7	A	8	A	9	C	10	*	G	13	G	14	G	15	A	16	G	17	cWW	ntsS	tSH	tHS	tHS	cWW
16	IL_7F8Z_010	7F8Z	0.0823	1		J+I	RNA (19-mer)	C	3	G	4	A	5	G	7	A	8	A	9	C	10	*	G	13	G	14	G	15	A	16	G	17	cWW	ntsS	tSH	tHS	tHS	cWW
17	IL_7F8Z_009	7F8Z	0.0821	1		I+J	RNA (19-mer)	C	3	G	4	A	5	G	7	A	8	A	9	C	10	*	G	13	G	14	G	15	A	16	G	17	cWW	tsS	tSH	tHS	tHS	cWW
18	IL_5FJC_002	5FJC	0.1170	1	Kink-turn	A	SAM-I riboswitch	C	31	G	32	A	33\|\|A	G	35	A	36	A	37	C	38	*	G	17	G	18	G	19	A	20	G	21	cWW	tsS	tSH	tHS	tHS	cWW
19	IL_3U4M_004	3U4M	0.1365	1	Kink-turn	B	LSU rRNA	C	2129	U	2130	G	2131	G	2133	A	2134	A	2135	C	2136	*	G	2155	G	2156	G	2157	A	2158	G	2159	cWW	tsS	tSH	tHS	tHS	cWW
20	IL_5FJ0_001	5FJ0	0.1092	1		A+B	HMKT-7	C	3	G	4	A	5	G	7	A	8	A	9	C	10	*	G	13	G	14	G	15	A	16	G	17	cWW	ntsS	tSH	tHS	tHS	cWW
21	IL_5FJ0_002	5FJ0	0.0969	1		B+A	HMKT-7	C	3	G	4	A	5	G	7	A	8	A	9	C	10	*	G	13	G	14	G	15	A	16	G	17	cWW	ntsS	tSH	tHS	tHS	cWW
22	IL_9DFE_046	9DFE	0.1406	1	Kink-turn	1A	LSU rRNA	C	1208	G	1209	A	1210	G	1212	A	1213	A	1214	G	1215	*	U	1234	G	1235	G	1236	A	1237	G	1238	cWW	ntsS	tSH	tHS	tHS	cWW
23	IL_5J7L_288	5J7L	0.1352	1	Kink-turn	DA	LSU rRNA	C	1208	U	1209	G	1210	G	1212	A	1213	A	1214	G	1215	*	U	1234	G	1235	G	1236	A	1237	G	1238	cWW	tsS	tSH	tHS	tHS	cWW
24	IL_4V9F_048	4V9F	0.1499	1	Kink-turn	0	LSU rRNA	G	1312	A	1313	U	1314	G	1316	A	1317	A	1318	G	1319	*	U	1338	G	1339	G	1340	A	1341	C	1342	cWW	ntsS	tSH	tHS	tHS	cWW
25	IL_7EAG_002	7EAG	0.1738	1	Kink-turn	C+D	RNA (19-mer)	C	3	U	4	A	5	G	7	A	8	A	9	G	10	*	U	13	G	14	G	15	A	16	G	17	cWW	ntsS	tSH	tHS	tHS	cWW
26	IL_7EAG_003	7EAG	0.1587	1	Kink-turn	D+C	RNA (19-mer)	C	3	U	4	A	5	G	7	A	8	A	9	G	10	*	U	13	G	14	G	15	A	16	G	17	cWW		ntSH	ntHS	tHS	cWW
27	IL_7A0S_043	7A0S	0.1904	1	Kink-turn	X	LSU rRNA	C	1221	G	1222	G	1223	G	1225	A	1226	A	1227	G	1228	*	U	1247	G	1248	G	1249	A	1250	G	1251	cWW	ntsS	tSH	ntHS	tHS	cWW
28	IL_4WF9_046	4WF9	0.1907	1	Kink-turn	X	LSU rRNA	C	1246	G	1247	U	1248	G	1250	A	1251	A	1252	G	1253	*	U	1272	G	1273	G	1274	A	1275	G	1276	cWW			ntHS	tHS	cWW
29	IL_3V7E_002	3V7E	0.1610	1	Kink-turn	C	SAM-I riboswitch	C	31	G	32	A	33	G	35	A	36	A	37	A	38	*	U	17	G	18	G	19	A	20	G	21	cWW	tsS	tSH		tHS	cWW
30	IL_8P9A_287	8P9A	0.2215	1	Kink-turn	AR	LSU rRNA	U	1388	G	1389	A	1390	G	1392	A	1393	A	1394	G	1395	*	U	1415	C	1416	G	1417	A	1418	A	1419	cWW	tsS	tSH	tHS	tHS	cWW
31	IL_8CRE_063	8CRE	0.2277	1	Kink-turn (H)	1	LSU rRNA	U	1384	G	1385	A	1386	G	1388	A	1389	A	1390	G	1391	*	U	1411	C	1412	G	1413	A	1414	A	1415	cWW	ntsS	tSH	tHS	tHS	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CGAAGAAC*GGGAG	11
CGAAGAC*GGGAG	2
CUAUGAAG*UGGAG	2
UGACGAAG*UCGAA	2
CUUUGAAG*UGGAG	1
CGACGAAG*CAGAG	1
AGACGAUC*GGGAU	1
CGAAG(6MZ)AC*GGGAG	1
UGAUGACC*GCAAG	1
CGA(2PR)GAAC*GGGAG	1
CGAGAAC*GGGAG	1
CUGUGAAC*GGGAG	1
CGAUGAAG*UGGAG	1
CUGCGAAG*UGGAG	1
GAUGGAAG*UGGAC	1
CGGAGAAG*UGGAG	1
CGUUGAAG*UGGAG	1
CGAUGAAA*UGGAG	1

Non-Watson-Crick part of the motif

Sequence	Counts
GAAGAA*GGA	11
GAAG(6MZ)A*GGA	3
GA(2PR)GAA*GGA	2
GAUGAA*GGA	2
UAUGAA*GGA	2
GACGAA*CGA	2
UUUGAA*GGA	1
GACGAA*AGA	1
GACGAU*GGA	1
GAUGAC*CAA	1
UGUGAA*GGA	1
UGCGAA*GGA	1
AUGGAA*GGA	1
GGAGAA*GGA	1
GUUGAA*GGA	1

Release history

Release	3.95
Date	2025-03-26
Status	Updated, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Motif IL_70923.8 Version IL_70923.8 of this group appears in releases 3.95 to 3.95 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_70923.8 Version IL_70923.8 of this group appears in releases 3.95 to 3.95

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Csv

Json