Motif IL_83039.18 Version IL_83039.18 of this group appears in releases 3.88 to 3.89
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 1-3 | 1-5 | 3-4 | |||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_1S03_001 | 1S03 | 1.1790 | 0 | Single bulged U | A | 47-MER | A | 6 | U | 7 | G | 8 | * | C | 41 | U | 42 | cWW | cWW | |
2 | IL_1S03_005 | 1S03 | 1.1889 | 0 | Single bulged U | B | 47-MER | A | 6 | U | 7 | G | 8 | * | C | 41 | U | 42 | cWW | cWW | |
3 | IL_7A0S_079 | 7A0S | 1.3868 | 0 | Single bulged U | X | LSU rRNA | U | 2197 | U | 2198 | C | 2199 | * | G | 2186 | A | 2187 | cWW | cWW | |
4 | IL_4C7O_001 | 4C7O | 0.8842 | 0 | Single bulged U | E | SRP RNA | G | 38 | U | 39 | A | 40 | * | U | 7 | C | 8 | cWW | cWW | |
5 | IL_4KZD_001 | 4KZD | 1.0156 | 0 | Single bulged U | R | RNA (84-MER) | C | 74 | U | 75 | G | 76 | * | C | 10 | G | 11 | cWW | cWW | |
6 | IL_3W3S_002 | 3W3S | 1.0428 | 0 | Single bulged U | B | Selenocysteine transfer RNA | G | 43 | U | 43|||A | G | 44 | * | C | 26 | C | 27 | cWW | cWW | |
7 | IL_1GID_012 | 1GID | 0.9977 | 0 | Single bulged U | B | P4-P6 RNA RIBOZYME DOMAIN | G | 129 | U | 130 | U | 131 | * | A | 192 | C | 193 | cWW | cWW | |
8 | IL_4WF9_088 | 4WF9 | 0.9073 | 0 | Single bulged U | X | LSU rRNA | U | 2428 | U | 2429 | C | 2430 | * | G | 2441 | G | 2442 | cWW | cWW | |
9 | IL_3KTW_010 | 3KTW | 0.9008 | 0 | Single bulged U | C | SRP RNA | U | 178 | U | 179 | C | 180 | * | G | 152 | G | 153 | ncSH | cWW | ncWW |
10 | IL_8C3A_137 | 8C3A | 0.7909 | 0 | Single bulged U | 1 | LSU rRNA | U | 3346 | U | 3347 | G | 3348 | * | C | 3289 | G | 3290 | cWW | cWW | |
11 | IL_5TBW_131 | 5TBW | 0.6972 | 0 | Single bulged U | 1 | LSU rRNA | U | 3381 | U | 3382 | G | 3383 | * | C | 3324 | G | 3325 | cWW | cWW | |
12 | IL_7KKV_001 | 7KKV | 0.6666 | 0 | Single bulged U | B | OLE* RNA | U | 497 | U | 498 | U | 499 | * | A | 506 | G | 507 | cWW | cWW | |
13 | IL_5J7L_331 | 5J7L | 0.6057 | 0 | Single bulged U | DA | LSU rRNA | U | 2202 | U | 2203 | G | 2204 | * | U | 2220 | G | 2221 | cWW | cWW | |
14 | IL_6JQ6_006 | 6JQ6 | 0.5827 | 0 | Single bulged U | U | RNA (81-MER) | A | 38 | U | 39 | C | 40 | * | G | 55 | U | 56 | cWW | cWW | |
15 | IL_6JQ5_006 | 6JQ5 | 0.5730 | 0 | Single bulged U | B | RNA (82-MER) | A | 38 | U | 39 | C | 40 | * | G | 55 | U | 56 | cWW | cWW | |
16 | IL_6JQ5_003 | 6JQ5 | 0.5649 | 0 | Single bulged U | A | RNA (82-MER) | A | 38 | U | 39 | C | 40 | * | G | 55 | U | 56 | cWW | cWW | |
17 | IL_2A64_003 | 2A64 | 0.5835 | 0 | Single bulged U | A | ribonuclease P RNA | G | 66 | U | 67 | G | 68 | * | C | 77 | C | 78 | cWW | cWW | |
18 | IL_4O26_001 | 4O26 | 0.5852 | 0 | Single bulged U | E | Telomerase TR | G | 181 | U | 182 | C | 183 | * | G | 193 | C | 194 | cWW | cWW | |
19 | IL_4WF9_030 | 4WF9 | 0.7160 | 0 | Single bulged U | X | LSU rRNA | A | 969 | U | 970 | U | 971 | * | A | 897 | U | 898 | cWW | cWW | |
20 | IL_3TZR_002 | 3TZR | 0.5067 | 0 | Single bulged U | B+A | RNA (16-mer) | G | 105 | U | 106 | G | 107 | * | U | 61 | C | 62 | cWW | cWW | |
21 | IL_5TBW_134 | 5TBW | 0.5731 | 0 | Single bulged U | 1 | LSU rRNA | G | 3340 | U | 3341 | A | 3342 | * | U | 3363 | C | 3364 | cWW | cWW | |
22 | IL_8C3A_027 | 8C3A | 0.7743 | 0 | Single bulged U | 1 | LSU rRNA | A | 771 | U | 772 | U | 773 | * | A | 751 | U | 752 | cWW | cWW | |
23 | IL_5TBW_025 | 5TBW | 0.7806 | 0 | Single bulged U | 1 | LSU rRNA | A | 775 | U | 776 | U | 777 | * | A | 755 | U | 756 | cWW | cWW | |
24 | IL_5TBW_086 | 5TBW | 0.8184 | 0 | Single bulged U | 1 | LSU rRNA | C | 2204 | U | 2205 | G | 2206 | * | C | 2237 | G | 2238 | cWW | cWW | |
25 | IL_5J7L_334 | 5J7L | 0.8751 | 0 | Single bulged U | DA | LSU rRNA | U | 2401 | U | 2402 | C | 2403 | * | G | 2414 | G | 2415 | cWW | cWW | |
26 | IL_6MWN_006 | 6MWN | 0.6710 | 0 | Single bulged U | B | IRES | U | 659 | U | 660 | C | 661 | * | G | 646 | A | 647 | cWW | cWW | |
27 | IL_2R8S_004 | 2R8S | 0.5943 | 0 | Single bulged U | R | P4-P6 RNA RIBOZYME DOMAIN | G | 129 | U | 130 | U | 131 | * | A | 192 | C | 193 | cWW | cWW | |
28 | IL_2ZY6_002 | 2ZY6 | 0.8400 | 0 | Single bulged U | A | phenylalanyl transfer RNA | G | 10 | U | 11 | G | 12 | * | C | 24 | C | 25 | cWW | cWW | |
29 | IL_8TQX_002 | 8TQX | 0.7855 | 0 | Single bulged U | A+D | Zika virus stem-loop A (SLA) bottom stem | G | 14 | U | 15 | A | 16 | * | U | 4 | C | 5 | cWW | cWW | |
30 | IL_2UWM_003 | 2UWM | 0.8137 | 0 | Single bulged U | D | RNA (23-mer) | C | 25 | U | 26 | G | 27 | * | C | 21 | G | 22 | cWW | cWW | |
31 | IL_6JDV_003 | 6JDV | 0.8387 | 0 | Single bulged U | B | sgRNA | G | 95 | U | 96 | G | 97 | * | C | 81 | C | 82 | cWW | cWW | |
32 | IL_6M0X_002 | 6M0X | 0.7538 | 0 | Single bulged U | B | RNA (71-MER) | A | 59 | U | 60 | G | 61 | * | C | 55 | U | 56 | cWW | cWW | |
33 | IL_8C3A_068 | 8C3A | 0.6537 | 0 | Single bulged U | 1 | LSU rRNA | G | 1556 | U | 1557 | G | 1558 | * | C | 1573 | C | 1574 | cWW | cWW | |
34 | IL_5J7L_388 | 5J7L | 0.3948 | 0 | Single bulged U | DA | LSU rRNA | G | 2067 | U | 2068 | G7M | 2069 | * | C | 2442 | C | 2443 | cWW | cWW | |
35 | IL_4V9F_074 | 4V9F | 0.4332 | 0 | Single bulged U | 0 | LSU rRNA | A | 2108 | U | 2109 | G | 2110 | * | C | 2477 | U | 2478 | cWW | cWW | |
36 | IL_4WF9_080 | 4WF9 | 0.4065 | 0 | Single bulged U | X | LSU rRNA | G | 2094 | U | 2095 | G | 2096 | * | C | 2469 | C | 2470 | cWW | cWW | |
37 | IL_7A0S_075 | 7A0S | 0.3947 | 0 | Single bulged U | X | LSU rRNA | G | 2050 | U | 2051 | G | 2052 | * | C | 2421 | C | 2422 | cWW | cWW | |
38 | IL_8VTW_079 | 8VTW | 0.3453 | 0 | Single bulged U | 1A | LSU rRNA | G | 2067 | U | 2068 | G | 2069 | * | C | 2442 | C | 2443 | cWW | cWW | |
39 | IL_8C3A_098 | 8C3A | 0.3326 | 0 | Single bulged U | 1 | LSU rRNA | G | 2387 | U | 2388 | U | 2389 | * | A | 2783 | C | 2784 | cWW | cWW | |
40 | IL_5TBW_093 | 5TBW | 0.3188 | 0 | Single bulged U | 1 | LSU rRNA | G | 2409 | U | 2410 | U | 2411 | * | A | 2811 | C | 2812 | cWW | cWW | |
41 | IL_4V88_439 | 4V88 | 0.4244 | 0 | Single bulged U | A6 | SSU rRNA | G | 1051 | U | 1052 | G | 1053 | * | C | 1066 | C | 1067 | cWW | cWW | |
42 | IL_4FRG_002 | 4FRG | 0.4935 | 0 | Single bulged U | B | cobalamin riboswitch aptamer domain | G | 23 | U | 24 | G | 25 | * | C | 39 | C | 40 | cWW | cWW | |
43 | IL_8F5G_001 | 8F5G | 0.4706 | 0 | Single bulged U | D | RNA | A | 5 | U | 6 | C | 7 | * | G | 21 | U | 22 | cWW | cWW | |
44 | IL_5TBW_146 | 5TBW | 0.3139 | 0 | Single bulged U | 4 | 5.8S rRNA | A | 89 | U | 90 | C | 91 | * | G | 68 | U | 69 | cWW | cWW | |
45 | IL_6LT7_001 | 6LT7 | 0.3292 | 0 | Single bulged U | C | 50-mer RNA | G | 46 | U | 47 | U | 48 | * | A | 41 | C | 42 | cWW | cWW | |
46 | IL_8C3A_424 | 8C3A | 0.0000 | 0 | Single bulged U | CM | SSU rRNA | G | 555 | U | 556 | C | 557 | * | G | 584 | C | 585 | cWW | cWW | |
47 | IL_8C3A_415 | 8C3A | 0.3710 | 0 | Single bulged U | CM | SSU rRNA | U | 437 | U | 438 | A | 439 | * | U | 461 | A | 462 | cWW | cWW | |
48 | IL_4V88_407 | 4V88 | 0.3405 | 0 | Single bulged U | A6 | SSU rRNA | U | 439 | U | 440 | A | 441 | * | U | 463 | A | 464 | cWW | cWW | |
49 | IL_5J7L_017 | 5J7L | 0.3559 | 0 | Single bulged U | AA | SSU rRNA | U | 367 | U | 368 | G | 369 | * | C | 392 | A | 393 | cWW | cWW | |
50 | IL_6CZR_126 | 6CZR | 0.4005 | 0 | Single bulged U | 1a | SSU rRNA | U | 363 | U | 364 | C | 365 | * | G | 388 | A | 389 | cWW | cWW | |
51 | IL_4LFB_014 | 4LFB | 0.3829 | 0 | Single bulged U | A | SSU rRNA | U | 367 | U | 368 | C | 369 | * | G | 392 | A | 393 | cWW | cWW | |
52 | IL_3D2V_001 | 3D2V | 0.3913 | 0 | Single bulged U | A | TPP riboswitch (THI element) | G | 73 | U | 74 | G | 75 | * | C | 5 | C | 6 | cWW | cWW | |
53 | IL_2OIU_003 | 2OIU | 0.4404 | 0 | Single bulged U | Q | L1 Ribozyme RNA Ligase | G | 18 | U | 19 | U | 20 | * | A | 41 | C | 42 | cWW | cWW | |
54 | IL_2PJP_001 | 2PJP | 0.4684 | 0 | Single bulged U | B | SECIS RNA | G | 16 | U | 17 | U | 18 | * | A | 29 | C | 30 | cWW | cWW | |
55 | IL_3NDB_005 | 3NDB | 0.5503 | 0 | Single bulged U | M | SRP RNA | C | 139 | U | 140 | C | 141 | * | G | 237 | G | 238 | cWW | cWW | |
56 | IL_8C3A_003 | 8C3A | 0.4280 | 0 | Single bulged U | 1+4 | LSU rRNA + 5.8S rRNA | A | 12 | U | 13 | C | 14 | * | G | 144 | U | 145 | cWW | cWW | |
57 | IL_5TBW_003 | 5TBW | 0.4888 | 0 | Single bulged U | 1+4 | LSU rRNA + 5.8S rRNA | A | 13 | U | 14 | C | 15 | * | G | 144 | U | 145 | cWW | cWW | |
58 | IL_6UFH_004 | 6UFH | 0.4714 | 0 | Single bulged U | A | RNA (167-MER) | U | 139 | U | 140 | C | 141 | * | G | 154 | G | 155 | cWW | cWW | |
59 | IL_6UFG_004 | 6UFG | 0.5604 | 0 | Single bulged U | A | RNA (166-MER) | U | 138 | U | 139 | C | 140 | * | G | 153 | G | 154 | cWW | cWW | |
60 | IL_2A64_002 | 2A64 | 0.3943 | 0 | Single bulged U | A | ribonuclease P RNA | G | 51 | U | 52 | C | 53 | * | G | 395 | C | 396 | cWW | cWW | |
61 | IL_3CUL_007 | 3CUL | 0.6119 | 0 | Single bulged U | C | RNA (92-MER) | U | 17 | U | 18 | C | 19 | * | GTP | 1 | G | 2 | cWW | cWW | |
62 | IL_8TQX_001 | 8TQX | 0.4923 | 0 | Single bulged U | D+A | Zika virus stem-loop A (SLA) bottom stem | G | 14 | U | 15 | A | 16 | * | U | 4 | C | 5 | cWW | cWW | |
63 | IL_8C3A_140 | 8C3A | 0.5065 | 0 | Single bulged U | 1 | LSU rRNA | G | 3305 | U | 3306 | A | 3307 | * | U | 3328 | C | 3329 | cWW | cWW | |
64 | IL_3WBM_001 | 3WBM | 0.5203 | 0 | Single bulged U | X+Y | RNA (25-MER) | G | 2 | U | 3 | A | 4 | * | U | 23 | C | 24 | cWW | cWW | |
65 | IL_7KVT_002 | 7KVT | 0.3694 | 0 | Single bulged U | B | Squash RNA aptamer bound to DFHBI-1T with iridium (III) ions | G | 50 | U | 51 | A | 52 | * | U | 66 | C | 67 | cWW | cWW | |
66 | IL_8C3A_056 | 8C3A | 0.3279 | 0 | Single bulged U | 1 | LSU rRNA | G | 1203 | U | 1204 | G | 1205 | * | C | 1292 | C | 1293 | cWW | cWW | |
67 | IL_5TBW_053 | 5TBW | 0.4193 | 0 | Single bulged U | 1 | LSU rRNA | G | 1207 | U | 1208 | G | 1209 | * | C | 1296 | C | 1297 | cWW | cWW | |
68 | IL_7VTI_004 | 7VTI | 0.4061 | 0 | Single bulged U | B | crRNA | G | 21 | U | 22 | G | 23 | * | C | 14 | C | 15 | cWW | cWW | |
69 | IL_3MEI_001 | 3MEI | 0.4018 | 0 | Single bulged U | B+A | RNA (23-mer) | C | 15 | U | 16 | G | 17 | * | C | 7 | G | 8 | cWW | cWW | |
70 | IL_8C3A_455 | 8C3A | 0.4917 | 0 | Single bulged U | CM | SSU rRNA | G | 1253 | U | 1254 | G | 1255 | * | C | 1426 | C | 1427 | cWW | cWW | |
71 | IL_4V88_449 | 4V88 | 0.4718 | 0 | Single bulged U | A6 | SSU rRNA | G | 1268 | U | 1269 | G | 1270 | * | C | 1440 | C | 1441 | cWW | cWW | |
72 | IL_5J7L_046 | 5J7L | 0.4909 | 0 | Single bulged U | AA | SSU rRNA | G | 1048 | U | 1049 | G | 1050 | * | C | 1208 | C | 1209 | cWW | cWW | |
73 | IL_4LFB_042 | 4LFB | 0.5307 | 0 | Single bulged U | A | SSU rRNA | G | 1048 | U | 1049 | G | 1050 | * | C | 1208 | C | 1209 | cWW | cWW | |
74 | IL_4V9F_107 | 4V9F | 0.4433 | 0 | Single bulged U | 9 | 5S rRNA | G | 86 | U | 87 | G | 88 | * | C | 95 | C | 96 | cWW | cWW | |
75 | IL_7PMQ_002 | 7PMQ | 0.5667 | 0 | Single bulged U | F | RNA (42-MER) | A | 24 | U | 25 | A | 26 | * | U | 40 | U | 41 | cWW | cWW | |
76 | IL_2PN3_003 | 2PN3 | 0.5142 | 0 | Single bulged U | B+A | RNA (20-mer) | G | 105 | U | 106 | G | 107 | * | U | 61 | C | 62 | cWW | cWW | |
77 | IL_4V88_414 | 4V88 | 0.3809 | 0 | Single bulged U | A6 | SSU rRNA | G | 557 | U | 558 | C | 559 | * | G | 586 | C | 587 | cWW | cWW | |
78 | IL_7PMM_002 | 7PMM | 0.7146 | 0 | Single bulged U | D | RNA (45mer) containing HP92 of the 23S rRNA | A | 15 | U | 16 | A | 17 | * | U | 31 | U | 32 | cWW | cWW | |
79 | IL_4LFB_046 | 4LFB | 0.5086 | 0 | Single bulged U | A | SSU rRNA | C | 1195 | U | 1196 | G | 1197 | * | C | 1060 | G | 1061 | cWW | cWW | |
80 | IL_6CZR_156 | 6CZR | 0.5065 | 0 | Single bulged U | 1a | SSU rRNA | C | 1177 | U | 1178 | G | 1179 | * | C | 1043 | G | 1044 | cWW | cWW | |
81 | IL_8C3A_476 | 8C3A | 0.6227 | 0 | Single bulged U | CM | SSU rRNA | U | 1643 | U | 1644 | G | 1645 | * | U | 1730 | A | 1731 | cWW | cWW | |
82 | IL_4V88_469 | 4V88 | 0.5976 | 0 | Single bulged U | A6 | SSU rRNA | U | 1656 | U | 1657 | G | 1658 | * | U | 1743 | A | 1744 | cWW | cWW | |
83 | IL_7A0S_035 | 7A0S | 0.5910 | 0 | Single bulged U | X | LSU rRNA | A | 1022 | U | 1023 | G | 1024 | * | C | 1160 | U | 1161 | cWW | cWW | |
84 | IL_5TBW_050 | 5TBW | 0.4958 | 0 | Single bulged U | 1 | LSU rRNA | A | 1180 | U | 1181 | A | 1182 | * | U | 1324 | U | 1325 | cWW | cWW | |
85 | IL_8C3A_053 | 8C3A | 0.3859 | 0 | Single bulged U | 1 | LSU rRNA | A | 1176 | U | 1177 | G | 1178 | * | C | 1320 | U | 1321 | cWW | cWW | |
86 | IL_4V9F_039 | 4V9F | 0.3890 | 0 | Single bulged U | 0 | LSU rRNA | G | 1108 | U | 1109 | G | 1110 | * | C | 1253 | C | 1254 | cWW | cWW | |
87 | IL_8VTW_037 | 8VTW | 0.3825 | 0 | Single bulged U | 1A | LSU rRNA | G | 1011 | U | 1012 | C | 1013 | * | G | 1149 | C | 1150 | cWW | cWW | |
88 | IL_5J7L_279 | 5J7L | 0.4087 | 0 | Single bulged U | DA | LSU rRNA | G | 1011 | U | 1012 | C | 1013 | * | G | 1149 | C | 1150 | cWW | cWW | |
89 | IL_4WF9_038 | 4WF9 | 0.4622 | 0 | Single bulged U | X | LSU rRNA | A | 1055 | U | 1056 | A | 1057 | * | U | 1193 | U | 1194 | cWW | cWW | |
90 | IL_8VMB_001 | 8VMB | 0.5615 | 0 | Single bulged U | R | RNA (83-MER) | G | 40 | U | 41 | G | 42 | * | C | 36 | C | 37 | cWW | cWW | |
91 | IL_8VMA_002 | 8VMA | 0.7182 | 0 | Single bulged U | C | RNA (88-MER) | G | 40 | U | 41 | G | 42 | * | C | 36 | C | 37 | cWW | cWW | |
92 | IL_8C3A_136 | 8C3A | 0.4912 | 0 | Single bulged U | 1 | LSU rRNA | G | 3283 | U | 3284 | A | 3285 | * | U | 3352 | C | 3353 | cWW | cWW | |
93 | IL_5TBW_130 | 5TBW | 0.4763 | 0 | Single bulged U | 1 | LSU rRNA | G | 3318 | U | 3319 | A | 3320 | * | U | 3387 | C | 3388 | ncWW | cWW | |
94 | IL_5J7L_298 | 5J7L | 0.4931 | 0 | Single bulged U | DA | LSU rRNA | G | 1459 | U | 1460 | C | 1461 | * | G | 1450 | C | 1451 | cWW | cWW | |
95 | IL_5TBW_125 | 5TBW | 0.4913 | 0 | Single bulged U | 1 | LSU rRNA | G | 3197 | U | 3198 | G | 3199 | * | C | 3193 | C | 3194 | cWW | cWW | |
96 | IL_3SNP_004 | 3SNP | 0.6191 | 0 | Single bulged U | D | ferritin H IRE RNA | G | 18 | U | 19 | U | 20 | * | A | 13 | C | 14 | cWW | cWW | |
97 | IL_8KAL_003 | 8KAL | 0.7234 | 0 | Single bulged U | A | RNA (98-MER) | G | 58 | U | 59 | C | 60 | * | G | 54 | C | 55 | cWW | ncWW | |
98 | IL_8KAH_004 | 8KAH | 0.7371 | 0 | Single bulged U | I | RNA (65-MER) | G | 58 | U | 59 | C | 60 | * | G | 54 | C | 55 | cWW | ncWW | |
99 | IL_4ZT0_004 | 4ZT0 | 0.7303 | 0 | Single bulged U | D | single-guide RNA | G | 58 | U | 59 | C | 60 | * | G | 54 | C | 55 | cWW | cWW | |
100 | IL_5VW1_002 | 5VW1 | 0.7521 | 0 | Single bulged U | C | sgRNA | G | 58 | U | 59 | C | 60 | * | G | 54 | C | 55 | cWW | cWW | |
101 | IL_5FQ5_002 | 5FQ5 | 0.7300 | 0 | Single bulged U | A | SGRNA | G | 58 | U | 59 | C | 60 | * | G | 54 | C | 55 | cWW | cWW | |
102 | IL_7QQX_002 | 7QQX | 0.7329 | 0 | Single bulged U | A | FANCF sgRNA | G | 58 | U | 59 | C | 60 | * | G | 54 | C | 55 | cWW | cWW | |
103 | IL_5B2T_002 | 5B2T | 0.7362 | 0 | Single bulged U | A | Guide RNA | G | 58 | U | 59 | C | 60 | * | G | 54 | C | 55 | cWW | cWW | |
104 | IL_7QR0_002 | 7QR0 | 0.7371 | 0 | Single bulged U | A | TRAC sgRNA | G | 58 | U | 59 | C | 60 | * | G | 54 | C | 55 | cWW | cWW | |
105 | IL_6AEG_002 | 6AEG | 0.7264 | 0 | Single bulged U | A | RNA (95-MER) | G | 58 | U | 59 | C | 60 | * | G | 54 | C | 55 | cWW | cWW | |
106 | IL_7ZO1_002 | 7ZO1 | 0.7491 | 0 | Single bulged U | A | CD34 sgRNA | G | 58 | U | 59 | C | 60 | * | G | 54 | C | 55 | cWW | cWW | |
107 | IL_7QR8_002 | 7QR8 | 0.7317 | 0 | Single bulged U | A | PTPRC sgRNA | G | 58 | U | 59 | C | 60 | * | G | 54 | C | 55 | cWW | cWW | |
108 | IL_7QQP_002 | 7QQP | 0.7300 | 0 | Single bulged U | A | AAVS1 sgRNA | G | 58 | U | 59 | C | 60 | * | G | 54 | C | 55 | cWW | cWW | |
109 | IL_7Z4D_002 | 7Z4D | 0.7310 | 0 | Single bulged U | A | sgRNA | G | 58 | U | 59 | C | 60 | * | G | 54 | C | 55 | cWW | cWW | |
110 | IL_5F9R_003 | 5F9R | 0.7979 | 0 | Single bulged U | A | RNA (116-MER) | G | 76 | U | 77 | C | 78 | * | G | 72 | C | 73 | cWW | cWW | |
111 | IL_8C3A_409 | 8C3A | 0.9582 | 0 | Single bulged U | CM | SSU rRNA | G | 277 | U | 278 | G | 279 | * | C | 273 | C | 274 | cWW | cWW | |
112 | IL_4V88_401 | 4V88 | 1.0118 | 0 | Single bulged U | A6 | SSU rRNA | G | 279 | U | 280 | G | 281 | * | C | 275 | C | 276 | cWW | cWW | |
113 | IL_8C3A_035 | 8C3A | 0.6581 | 0 | Single bulged U | 1 | LSU rRNA | C | 869 | U | 870 | G | 871 | * | C | 882 | G | 883 | cWW | cWW | |
114 | IL_5TBW_032 | 5TBW | 0.6736 | 0 | Single bulged U | 1 | LSU rRNA | C | 873 | U | 874 | G | 875 | * | C | 886 | G | 887 | cWW | cWW | |
115 | IL_4V9F_029 | 4V9F | 0.6257 | 0 | Single bulged U | 0 | LSU rRNA | G | 834 | U | 835 | G | 836 | * | C | 847 | C | 848 | cWW | cWW | |
116 | IL_4V9F_013 | 4V9F | 0.5854 | 0 | Single bulged U | 0 | LSU rRNA | G | 307 | U | 308 | C | 309 | * | G | 322 | C | 323 | cWW | cWW | |
117 | IL_8C3A_013 | 8C3A | 0.6351 | 0 | Single bulged U | 1 | LSU rRNA | G | 188 | U | 189 | U | 190 | * | A | 203 | C | 204 | cWW | cWW | |
118 | IL_5TBW_012 | 5TBW | 0.6825 | 0 | Single bulged U | 1 | LSU rRNA | G | 189 | U | 190 | U | 191 | * | A | 204 | C | 205 | cWW | cWW | |
119 | IL_1ET4_002 | 1ET4 | 1.0256 | 0 | Major groove intercalation | A | RNA APTAMER, 35-MER | G | 226 | U | 227 | G | 228 | * | C | 218 | C | 219 | cWW | cWW | |
120 | IL_5LYS_008 | 5LYS | 1.2526 | 0 | Major groove intercalation | B | 7SK RNA | C | 62 | U | 63 | G | 64 | * | C | 45 | G | 46 | cWW | cWW | |
121 | IL_3MXH_003 | 3MXH | 1.4726 | 0 | Major groove intercalation | R | c-di-GMP riboswitch | C | 52 | U | 53 | C | 54 | * | G | 86 | G | 87 | cWW | cWW | |
122 | IL_3IWN_003 | 3IWN | 1.4698 | 0 | Major groove intercalation | A | C-di-GMP riboswitch | C | 42 | U | 43 | C | 44 | * | G | 81 | G | 82 | cWW | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
GUG*CC | 27 |
GUC*GC | 22 |
GUU*AC | 10 |
GUA*UC | 9 |
CUG*CG | 9 |
AUC*GU | 7 |
AUG*CU | 6 |
UUC*GG | 5 |
UUC*GA | 4 |
AUA*UU | 4 |
AUU*AU | 3 |
CUC*GG | 3 |
UUG*CG | 2 |
GUG*UC | 2 |
UUA*UA | 2 |
UUG*UA | 2 |
UUU*AG | 1 |
UUG*UG | 1 |
GU(G7M)*CC | 1 |
UUG*CA | 1 |
UUC*(GTP)G | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
U* | 122 |
- Annotations
-
- Single bulged U (118)
- Major groove intercalation (4)
- Basepair signature
- cWW-L-cWW
- Heat map statistics
- Min 0.03 | Avg 0.83 | Max 2.05
Coloring options: