Motif IL_87738.1 Version IL_87738.1 of this group appears in releases 0.5 to 0.5
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 3-6 | 4-5 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3O30_029 | 3O30 | 0.7504 | 0 | 1 | 18S ribosomal RNA | U | 532 | U | 533 | A | 534 | A | 535 | * | U | 517 | A | 518 | C | 519 | A | 520 | cWW | ncWW | cWW | ||
| 2 | IL_1F7Y_003 | 1F7Y | 0.0000 | 1 | B | 16S RIBOSOMAL RNA FRAGMENT | G | 26 | A | 27||A | G | 28||A | G | 30 | * | U | 39 | G | 40 | G | 41 | U | 42 | cWW | cWW | ncwW | cWW | |
| 3 | IL_2A64_004 | 2A64 | 0.2240 | 2 | A | ribonuclease P RNA | G | 236 | G | 237 | U | 238 | A | 241 | * | U | 191 | G | 192 | C | 193 | C | 194 | cWW | ncWW | cWW | ||
| 4 | IL_1FJG_029 | 1FJG | 0.2417 | 1 | Tandem non-canonical cWW pairs (H) | A | SSU rRNA | G | 662 | A | 663 | G | 664 | G | 666 | * | U | 740 | G | 741 | G | 742 | U | 743 | cWW | cWW | cwW | cWW |
| 5 | IL_1G1X_003 | 1G1X | 0.3248 | 1 | Tandem non-canonical cWW pairs | D+E | 16S RIBOSOMAL RNA | G | 662 | A | 663 | G | 664 | G | 666 | * | U | 740 | G | 741 | G | 742 | U | 743 | cWW | cWW | cwW | cWW |
| 6 | IL_2NOK_007 | 2NOK | 0.7403 | 0 | D+C | RNA (20-mer) | G | 102 | U | 103 | C | 104 | G | 105 | * | C | 62 | U | 63 | U | 64 | C | 65 | cWW | cwW | cWW | ||
| 7 | IL_2AW7_036 | 2AW7 | 0.7472 | 1 | A | 16S ribosomal RNA | U | 662 | A | 663 | G | 664 | G | 666 | * | U | 740 | G | 741 | G | 742 | A | 743 | cWW | cWW | ncwW | cWW | |
| 8 | IL_3O30_009 | 3O30 | 0.7706 | 0 | 1 | 18S ribosomal RNA | G | 109 | U | 110 | U | 111 | A | 112 | * | U | 302 | U | 303 | U | 304 | C | 305 | cWW | ncwW | cWW | ||
| 9 | IL_3O58_157 | 3O58 | 0.7485 | 2 | 1 | 25S ribosomal RNA | U | 3373 | U | 3374 | A | 3375 | C | 3378 | * | G | 3327 | G | 3328 | U | 3329 | A | 3330 | cWW | ncwW | ncHW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAGAG*UGGU | 3 |
| UACA*UUAA | 1 |
| GGUAAA*UGCC | 1 |
| GUCG*CUUC | 1 |
| UAGAG*UGGA | 1 |
| GUUA*UUUC | 1 |
| GGUA*UUAAGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AGA*GG | 4 |
| AC*UA | 1 |
| GUAA*GC | 1 |
| UC*UU | 1 |
| UU*UU | 1 |
| GU*UAAG | 1 |
Release history
| Release | 0.5 |
|---|---|
| Date | 2011-12-08 |
| Status | New id, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_87738.1 | Only in the parent motif |
|---|---|---|---|
| IL_14877.3 Compare | IL_1G1X_003, IL_2NOK_007, IL_1F7Y_003, IL_1FJG_029 | IL_3O30_029, IL_2A64_004, IL_3O58_157, IL_2AW7_036, IL_3O30_009 | IL_2PN4_009, IL_2NOK_004, IL_255D_001, IL_165D_001, IL_2PN4_004, IL_413D_001, IL_280D_002, IL_280D_001, IL_1L9A_005, IL_2DR2_001, IL_1L9A_002, IL_1QBP_008, IL_1QBP_002, IL_1D4R_001, IL_1QBP_005, IL_1D4R_003, IL_2ZJR_040, IL_2O3Y_003, IL_402D_001, IL_422D_001, IL_1GID_008, IL_1JID_002, IL_1GID_001, IL_1S72_018, IL_1S72_037, IL_1S72_012 |
Children motifs
| Child motif | Common motif instances | Only in IL_87738.1 | Only in the child motif |
|---|---|---|---|
| IL_41766.1 Compare | IL_2NOK_007, IL_1FJG_029, IL_1G1X_003, IL_1F7Y_003, IL_2A64_004, IL_2AW7_036 | IL_3O30_029, IL_3O58_157, IL_3O30_009 | IL_2PN4_009, IL_2NOK_004, IL_2PN4_004, IL_3R2D_002, IL_3U5H_106, IL_3U5F_048, IL_2XZM_052, IL_3U5F_083, IL_280D_001, IL_3U5F_047, IL_3U5F_046, IL_3U5H_043, IL_2QBG_041, IL_3U5F_008, IL_1JID_002, IL_2XZM_091, IL_4A1B_103, IL_1D4R_001, IL_1D4R_003, IL_2ZJR_040, IL_1UN6_003, IL_3U5F_090, IL_402D_001, IL_2XZM_045, IL_2XZM_044, IL_1GID_008, IL_3U5H_135, IL_3U5H_134, IL_4A1B_127, IL_1MFQ_004, IL_1GID_001, IL_4A1B_047, IL_1S72_018, IL_3U5F_049, IL_2XZM_002, IL_2QBG_055, IL_1S72_012, IL_3U5F_078, IL_2XZM_008, IL_3U5F_055, IL_2XZM_088, IL_280D_002, IL_422D_001 |
- Annotations
-
- (7)
- Tandem non-canonical cWW pairs (H) (1)
- Tandem non-canonical cWW pairs (1)
- Basepair signature
- Heat map statistics
- Min 0.08 | Avg 0.57 | Max 0.99
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