IL_14877.3

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)		1		2		3		4	break		5		6		7		8	1-8	2-7	3-6	4-5
1	IL_1F7Y_003	1F7Y	0.1530	1		B	G	26	A	27\|\|A	G	28\|\|A	G	30	*	U	39	G	40	G	41	U	42	cWW	cWW	ncwW	cWW
2	IL_1FJG_029	1FJG	0.1533	1	Tandem non-canonical cWW pairs (H)	A	G	662	A	663	G	664	G	666	*	U	740	G	741	G	742	U	743	cWW	cWW	cwW	cWW
3	IL_1D4R_001	1D4R	0.1288	0	Tandem non-canonical cWW pairs	B+A	G	22	A	23	C	24	C	25	*	G	4	A	5	C	6	C	7	cWW	cWWa	cWW	cWW
4	IL_165D_001	165D	0.0000	0		A+B	U	3	U	4	C	5	G	6	*	U	12	U	13	C	14	G	15	cWW	cWW	cWW	cWW
5	IL_1D4R_003	1D4R	0.1372	0	Tandem non-canonical cWW pairs	A+B	G	22	A	23	C	24	C	25	*	G	4	A	5	C	6	C	7	cWW	cWW	cWW	cWW
6	IL_1G1X_003	1G1X	0.1969	1	Tandem non-canonical cWW pairs	D+E	G	662	A	663	G	664	G	666	*	U	740	G	741	G	742	U	743	cWW	cWW	cwW	cWW
7	IL_1GID_001	1GID	0.2213	1		A	G	103	A	104	A	105	U	107	*	A	214	G	215	C	216	C	217	cWW	cWW	cWW	cWW
8	IL_2ZJR_040	2ZJR	0.8187	0	Tandem non-canonical cWW pairs (H)	X	A	1175	U	1176	U	1177	C	1178	*	G	1196	U	1197	C	1198	U	1199	cWW	cWW	cWw	cWW
9	IL_2NOK_004	2NOK	0.7178	0		B+A	G	102	U	103	C	104	G	105	*	C	62	U	63	U	64	C	65	cWW	ncwW	ncWW	cWW
10	IL_2PN4_004	2PN4	0.7369	0		A+B	C	62	U	63	U	64	C	65	*	G	102	U	103	C	104	G	105	cWW	cWW	cWw	cWW
11	IL_1JID_002	1JID	0.5827	0	Tandem non-canonical cWW pairs	B	G	156	A	157	C	158	C	159	*	G	138	A	139	C	140	C	141	cWW	cWW	cWW	cWW
12	IL_1S72_012	1S72	0.6465	0		0	C	287	A	288	G	289	C	290	*	G	362	A	363	C	364	G	365	cWW	ncWW	ncWW	cWW
13	IL_1QBP_002	1QBP	0.6224	0	Tandem non-canonical cWW pairs	B+A	U	22	U	23	C	24	G	25	*	U	7	U	8	C	9	G	10	cWW	ncWW	cWW	cWW
14	IL_2DR2_001	2DR2	0.7089	0		B	G	10	C	11	G	12	C	13	*	G	22	C	23	G	24	C	25	ncWW		ncWW	cWW
15	IL_1L9A_005	1L9A	0.6131	0	Tandem non-canonical cWW pairs	B	G	156	A	157	C	158	C	159	*	G	138	A	139	C	140	C	141	cWW	ncWWa	ncWW	cWW
16	IL_280D_001	280D	0.6753	0	Tandem non-canonical cWW pairs	A+B	C	5	U	6	U	7	G	8	*	C	17	U	18	U	19	G	20	cWW	cwW	cWw	cWW
17	IL_1GID_008	1GID	0.4063	1		B	G	103	A	104	A	105	U	107	*	A	214	G	215	C	216	C	217	cWW	cWW	cWW	cWW
18	IL_1S72_037	1S72	0.6648	0		0	A	965	U	966	U	967	G	968	*	C	1000	U	1001	G	1002	U	1003	cWW	cSW	cWw	cWW
19	IL_1QBP_008	1QBP	0.6340	0		F+E	U	82	U	83	C	84	G	85	*	U	67	U	68	C	69	G	70	cWW	ncWW	cWW	cWW
20	IL_1S72_018	1S72	0.6582	0		0	C	596	A	597	C	598	G	599	*	C	558	U	559	C	560	G	561	cWW	ncWW	cWW	cWW
21	IL_255D_001	255D	0.6672	0	Tandem non-canonical cWW pairs	A	U	5\|\|\|\|2_656	U	6\|\|\|\|2_656	C	7\|\|\|\|2_656	G	8\|\|\|\|2_656	*	U	5	U	6	C	7	G	8	cWW	cWW	cWW	cWW
22	IL_1QBP_005	1QBP	0.6317	0		D+C	U	52	U	53	C	54	G	55	*	U	37	U	38	C	39	G	40	cWW	ncWW	cWW	cWW
23	IL_1L9A_002	1L9A	0.6064	0	Tandem non-canonical cWW pairs	B	G	120	U	121	U	122	C	123	*	G	227	A	228	U	229	C	230	cWW	ncWw	ncWW	cWW
24	IL_280D_002	280D	0.7060	0		D+C	C	41	U	42	U	43	G	44	*	C	29	U	30	U	31	G	32	cWW	cwW	cWw	cWW
25	IL_2O3Y_003	2O3Y	0.7336	1		B+A	C	30	G	31	C	32	U	33	*	A	15	A	17	A	18	G	19	cWW		cWS	cWW
26	IL_2NOK_007	2NOK	0.7322	0		D+C	G	102	U	103	C	104	G	105	*	C	62	U	63	U	64	C	65	cWW	cwW		cWW
27	IL_2PN4_009	2PN4	0.7555	0		C+D	C	62	U	63	U	64	C	65	*	G	102	U	103	C	104	G	105	cWW	cWW	cWw	cWW
28	IL_413D_001	413D	0.9969	0	Tandem non-canonical cWW pairs	A	U	6	U	7	C	8	G	9	*	U	6\|\|\|\|2_555	U	7\|\|\|\|2_555	C	8\|\|\|\|2_555	G	9\|\|\|\|2_555	cWW	cWW	cWW	cWW
29	IL_402D_001	402D	0.8948	0	Tandem non-canonical cWW pairs	B+A	C	111	C	112	A	113	G	114	*	C	103	C	104	A	105	G	106	cWW	cWW	cWW	cWW
30	IL_422D_001	422D	1.0250	0	Tandem non-canonical cWW pairs	A+B	U	7	U	8	C	9	G	10	*	U	19	U	20	C	21	G	22	cWW	cWW	cWW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
UUCG*UUCG	7
GACC*GACC	4
GAGAG*UGGU	3
GAAUU*AGCC	2
GUCG*CUUC	2
CUUC*GUCG	2
CUUG*CUUG	2
AUUC*GUCU	1
CAGC*GACG	1
GCGC*GCGC	1
AUUG*CUGU	1
CACG*CUCG	1
GUUC*GAUC	1
CGCU*AAAAG	1
CCAG*CCAG	1

Non-Watson-Crick part of the motif

Sequence	Counts
UC*UC	7
AC*AC	4
AGA*GG	3
UU*UC	3
AAU*GC	2
UC*UU	2
UU*UU	2
AG*AC	1
CG*CG	1
UU*UG	1
AC*UC	1
UU*AU	1
GC*AAA	1
CA*CA	1

Release history

Release	0.4
Date	2011-12-08
Status	Updated, 2 parents

Parent motifs

Parent motif	Common motif instances	Only in IL_14877.3	Only in the parent motif
IL_14877.2 Compare	IL_2NOK_007, IL_2NOK_004, IL_255D_001, IL_2PN4_009, IL_165D_001, IL_2PN4_004, IL_413D_001, IL_280D_002, IL_280D_001, IL_1FJG_029, IL_2DR2_001, IL_1L9A_002, IL_1QBP_008, IL_1QBP_002, IL_1D4R_001, IL_1QBP_005, IL_1D4R_003, IL_2ZJR_040, IL_2O3Y_003, IL_402D_001, IL_422D_001, IL_1JID_002, IL_1GID_001, IL_1S72_018, IL_1S72_012, IL_1G1X_003, IL_1F7Y_003, IL_1L9A_005	IL_1S72_037, IL_1GID_008
IL_58849.1 Compare	IL_1S72_037, IL_1GID_008	IL_2PN4_009, IL_2NOK_004, IL_255D_001, IL_1FJG_029, IL_165D_001, IL_2PN4_004, IL_413D_001, IL_280D_002, IL_280D_001, IL_1L9A_005, IL_2DR2_001, IL_1L9A_002, IL_1QBP_008, IL_2NOK_007, IL_1QBP_002, IL_1D4R_001, IL_1QBP_005, IL_1D4R_003, IL_2ZJR_040, IL_2O3Y_003, IL_402D_001, IL_422D_001, IL_1JID_002, IL_1GID_001, IL_1S72_018, IL_1S72_012, IL_1G1X_003, IL_1F7Y_003	IL_1DUQ_001, IL_1DUQ_005, IL_1CSL_001, IL_1FJG_045, IL_1DUQ_007

Children motifs

Child motif	Common motif instances	Only in IL_14877.3	Only in the child motif
IL_91286.1 Compare	IL_1S72_018, IL_2PN4_009, IL_2NOK_004, IL_2ZJR_040, IL_255D_001, IL_1JID_002, IL_1GID_008, IL_1S72_012, IL_280D_001, IL_2PN4_004, IL_413D_001, IL_1QBP_008, IL_1GID_001, IL_402D_001, IL_280D_002, IL_422D_001, IL_165D_001, IL_1QBP_002, IL_1D4R_001, IL_1QBP_005, IL_1D4R_003	IL_2NOK_007, IL_1S72_037, IL_1FJG_029, IL_1G1X_003, IL_2DR2_001, IL_2O3Y_003, IL_1L9A_002, IL_1L9A_005, IL_1F7Y_003	IL_2ZZM_001, IL_2QBG_041, IL_3O58_083, IL_2XZM_002, IL_3O58_056, IL_1UN6_003, IL_3O58_055, IL_3O58_123, IL_2XZM_088, IL_2XZM_008, IL_2XZM_091, IL_3O30_047, IL_3O30_046, IL_3O58_152, IL_2XZM_045, IL_3O30_048, IL_1MFQ_004, IL_2XZM_044
IL_87738.1 Compare	IL_1G1X_003, IL_2NOK_007, IL_1F7Y_003, IL_1FJG_029	IL_2PN4_009, IL_2NOK_004, IL_255D_001, IL_165D_001, IL_2PN4_004, IL_413D_001, IL_280D_002, IL_280D_001, IL_1L9A_005, IL_2DR2_001, IL_1L9A_002, IL_1QBP_008, IL_1QBP_002, IL_1D4R_001, IL_1QBP_005, IL_1D4R_003, IL_2ZJR_040, IL_2O3Y_003, IL_402D_001, IL_422D_001, IL_1GID_008, IL_1JID_002, IL_1GID_001, IL_1S72_018, IL_1S72_037, IL_1S72_012	IL_3O30_029, IL_2A64_004, IL_3O58_157, IL_2AW7_036, IL_3O30_009
IL_29784.1 Compare	IL_2O3Y_003	IL_2NOK_007, IL_2NOK_004, IL_255D_001, IL_2PN4_009, IL_165D_001, IL_2PN4_004, IL_413D_001, IL_280D_002, IL_280D_001, IL_1FJG_029, IL_2DR2_001, IL_1L9A_002, IL_1QBP_008, IL_1QBP_002, IL_1D4R_001, IL_1QBP_005, IL_1D4R_003, IL_2ZJR_040, IL_402D_001, IL_422D_001, IL_1GID_008, IL_1JID_002, IL_1GID_001, IL_1S72_018, IL_1S72_037, IL_1S72_012, IL_1G1X_003, IL_1F7Y_003, IL_1L9A_005	IL_3O30_028, IL_3O58_154, IL_2O3V_002, IL_3O58_164, IL_361D_001
IL_47671.1 Compare	IL_1S72_037	IL_2NOK_007, IL_2NOK_004, IL_255D_001, IL_2PN4_009, IL_165D_001, IL_2PN4_004, IL_413D_001, IL_280D_002, IL_280D_001, IL_1FJG_029, IL_2DR2_001, IL_1L9A_002, IL_1QBP_008, IL_1QBP_002, IL_1D4R_001, IL_1QBP_005, IL_1D4R_003, IL_2ZJR_040, IL_2O3Y_003, IL_402D_001, IL_422D_001, IL_1GID_008, IL_1JID_002, IL_1GID_001, IL_1S72_018, IL_1S72_012, IL_1G1X_003, IL_1F7Y_003, IL_1L9A_005	IL_2AW7_010, IL_2XZM_052

Motif IL_14877.3 Version IL_14877.3 of this group appears in releases 0.4 to 0.4 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_14877.3 Version IL_14877.3 of this group appears in releases 0.4 to 0.4

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