3DIO Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_3DIO_005 | 1/X/38:55 | No text annotation | geometric HL_3DIL_005 HL_10456.1 | |
| HL_3DIO_001 | 1/X/41:54 | No text annotation | geometric HL_3DIL_001 HL_20751.3 | |
| HL_3DIO_002 | 1/X/93:101 | Pseudoknot geometry | geometric HL_3DIL_002 HL_52651.4 | |
| HL_3DIO_003 | 1/X/124:130 | GNRA | geometric HL_3DIL_003 HL_02262.1 | |
| HL_3DIO_004 | 1/X/149:154 | No text annotation | geometric HL_3DIL_004 HL_78347.5 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_3DIO_001 | 1/X/12:14, 1/X/78:79 | Single bulged C | geometric IL_3DIL_001 IL_05642.5 | |
| IL_3DIO_002 | 1/X/19:22, 1/X/70:73 | Double sheared | geometric IL_3DIL_002 IL_58355.4 | |
| IL_3DIO_003 | 1/X/22:30, 1/X/63:70 | 9x8 Sarcin-Ricin with GA cWW pair; G-bulge | geometric IL_3DIL_003 IL_34470.3 | |
| IL_3DIO_005 | 1/X/38:41, 1/X/54:55 | Major groove platform; stack outside cWW | geometric IL_3DIL_004 IL_74641.4 | |
| IL_3DIO_006 | 1/X/84:85, 1/X/109:111 | Single bulged G | geometric IL_3DIL_005 IL_28408.4 | |
| IL_3DIO_007 | 1/X/115:117, 1/X/137:139 | Isolated non-canonical cWW pair | geometric IL_3DIL_006 IL_01003.6 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_3DIO_004 | Isolated non-canonical cWW pair |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J5_3DIO_001 | 1/X/9:12, 1/X/79:82, 1/X/113:114, 1/X/140:142, 1/X/161:166 | No text annotation | homologous J5_3DIL_001 J5_94937.1 |
Problematic loops
No problematic loops
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