Motif IL_75779.1 Version IL_75779.1 of this group appears in releases 2.0 to 2.0
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 1-8 | 2-6 | 2-7 | 2-8 | 3-6 | 4-5 | 4-6 | 6-7 | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | ➜ | 3J79 | 0.5955 | 0 | A | LSU rRNA | C | 3752 | G | 3753 | A | 3754 | U | 3755 | * | A | 3734 | A | 3735 | A | 3736 | G | 3737 | cWW | ntSW | ntWS | cWW | |||||
2 | ➜ | 4V91 | 0.6249 | 0 | 1 | LSU rRNA | A | 3342 | G | 3343 | A | 3344 | G | 3345 | * | C | 3360 | G | 3361 | A | 3362 | U | 3363 | cWW | ntSS | ntSS | cWW | |||||
3 | ➜ | 4V88 | 0.5152 | 0 | A5 | LSU rRNA | A | 3342 | G | 3343 | A | 3344 | G | 3345 | * | C | 3360 | G | 3361 | A | 3362 | U | 3363 | cWW | ntSS | tHS | cWW | |||||
4 | ➜ | 3JAM | 0.3906 | 0 | 2 | SSU rRNA | U | 516 | A | 517 | C | 518 | A | 519 | * | U | 531 | U | 532 | A | 533 | A | 534 | cWW | ncWW | tSH | tHS | cWW | ||||
5 | ➜ | 4V4Q | 0.4044 | 0 | CA | SSU rRNA | G | 1416 | G | 1417 | A | 1418 | G | 1419 | * | U | 1481 | G | 1482 | A | 1483 | C | 1484 | cWW | tSH | tHS | cWW | |||||
6 | ➜ | 3J9W | 0.4385 | 0 | AA | SSU rRNA | A | 1425 | G | 1426 | A | 1427 | G | 1428 | * | U | 1491 | G | 1492 | A | 1493 | U | 1494 | cWW | tSH | tHS | cWW | |||||
7 | ➜ | 5AJ3 | 0.3550 | 0 | A | SSU rRNA | C | 907 | A | 908 | A | 909 | G | 910 | * | C | 860 | A | 861 | A | 862 | G | 863 | cWW | tSH | tHS | cWW | |||||
8 | ➜ | 5A2Q | 0.2990 | 0 | 2 | SSU rRNA | C | 1717 | G | 1718 | A | 1719 | U | 1720 | * | A | 1813 | G | 1814 | A | 1815 | G | 1816 | cWW | ntHS | cWW | ncSH | |||||
9 | ➜ | 4V9F | 0.3050 | 0 | Double sheared | 0 | LSU rRNA | C | 2873 | G | 2874 | A | 2875 | G | 2876 | * | C | 2881 | G | 2882 | A | 2883 | G | 2884 | cWW | tSH | tHS | cWW | ||||
10 | ➜ | 4V8P | 0.3288 | 0 | F1 | LSU rRNA | A | 3300 | G | 3301 | A | 3302 | G | 3303 | * | C | 3316 | G | 3317 | A | 3318 | U | 3319 | cWW | tSH | tHS | cWW | |||||
11 | ➜ | 3DIR | 0.3527 | 0 | A | RNA (174-MER) | C | 19 | G | 20 | A | 21 | G | 22 | * | C | 70 | G | 71 | A | 72 | G | 73 | cWW | tSH | tHS | cWW | |||||
12 | ➜ | 3J7A | 0.3011 | 0 | A | SSU rRNA | A | 2036 | A | 2037 | A | 2038 | G | 2039 | * | C | 1950 | G | 1951 | A | 1952 | U | 1953 | cWW | ntSH | tHS | cWW | |||||
13 | ➜ | 4V88 | 0.2538 | 0 | Double sheared | A6 | SSU rRNA | A | 1744 | G | 1745 | A | 1746 | G | 1747 | * | C | 1653 | G | 1654 | A | 1655 | U | 1656 | cWW | tSH | tHS | cWW | ||||
14 | ➜ | 3J7P | 0.2361 | 0 | S2 | SSU rRNA | A | 1813 | G | 1814 | A | 1815 | G | 1816 | * | C | 1717 | G | 1718 | A | 1719 | U | 1720 | cWW | tSH | tHS | cWW | |||||
15 | ➜ | 3JAM | 0.2861 | 0 | 2 | SSU rRNA | G | 195 | A | 196 | A | 197 | G | 198 | * | C | 185 | G | 186 | A | 187 | C | 188 | cWW | tSH | tHS | cWW | ncSH | ||||
16 | ➜ | 3JAM | 0.2824 | 0 | 2 | SSU rRNA | A | 1742 | G | 1743 | A | 1744 | G | 1745 | * | C | 1651 | G | 1652 | A | 1653 | U | 1654 | cWW | tSH | tHS | cWW | |||||
17 | ➜ | 4V8P | 0.2778 | 0 | F1 | LSU rRNA | G | 125 | A | 126 | A | 127 | G | 128 | * | C | 138 | A | 139 | A | 140 | C | 141 | cWW | ntSH | ncSW | tHS | cWW | ncSH | |||
18 | ➜ | 5AOX | 0.2388 | 0 | Double sheared | C | ALU JO CONSENSUS RNA | G | 58 | G | 59 | A | 60 | U | 61 | * | A | 105 | G | 106 | A | 107 | C | 108 | cWW | tSH | tHS | cWW | ||||
19 | ➜ | 4KZD | 0.2214 | 0 | Double sheared | R | RNA (84-MER) | G | 11 | A | 12 | A | 13 | A | 14 | * | U | 71 | A | 72 | A | 73 | C | 74 | cWW | tSH | tHS | cWW | ||||
20 | ➜ | 4BTS | 0.2166 | 0 | DA | SSU rRNA | G | 1697 | G | 1698 | A | 1699 | A | 1700 | * | U | 1625 | A | 1626 | A | 1627 | C | 1628 | cWW | tSH | tHS | cWW | |||||
21 | ➜ | 4V8P | 0.2281 | 0 | F1 | LSU rRNA | G | 254 | G | 255 | A | 256 | G | 257 | * | C | 162 | A | 163 | A | 164 | C | 165 | cWW | tSH | tHS | cWW | |||||
22 | ➜ | 1FJG | 0.2053 | 0 | A | SSU rRNA | G | 1416 | G | 1417 | A | 1418 | G | 1419 | * | U | 1481 | G | 1482 | A | 1483 | C | 1484 | cWW | tSH | tHS | cWW | |||||
23 | ➜ | 4XWF | 0.2211 | 0 | Double sheared | A | ZMP/ZTP riboswitch | G | 36 | G | 37 | A | 38 | G | 39 | * | U | 7 | G | 8 | A | 9 | C | 10 | cWW | tSH | tHS | cWW | ||||
24 | ➜ | 5BTP | 0.2093 | 0 | A | RNA (62-MER) | G | 41 | A | 42 | A | 43 | G | 44 | * | U | 12 | G | 13 | A | 14 | C | 15 | cWW | tSH | tHS | cWW | |||||
25 | ➜ | 3J9M | 0.2342 | 0 | AA | SSU rRNA | U | 1298 | A | 1299 | A | 1300 | G | 1301 | * | C | 1274 | A | 1275 | A | 1276 | A | 1277 | cWW | tSH | tHS | cWW | |||||
26 | ➜ | 3D0U | 0.2020 | 0 | Double sheared | A | Lysine Riboswitch RNA | C | 16 | G | 17 | A | 18 | G | 19 | * | C | 67 | G | 68 | A | 69 | G | 70 | cWW | tSH | tHS | cWW | ||||
27 | ➜ | 3J7P | 0.1541 | 0 | 5 | LSU rRNA | C | 1450 | G | 1451 | A | 1452 | G | 1453 | * | C | 1431 | G | 1432 | A | 1433 | G | 1434 | cWW | tSH | tHS | cWW | |||||
28 | ➜ | 3J9W | 0.1318 | 0 | BA | LSU rRNA | C | 2393 | G | 2394 | A | 2395 | G | 2396 | * | C | 2379 | G | 2380 | A | 2381 | G | 2382 | cWW | tSH | tHS | cWW | |||||
29 | ➜ | 5J7L | 0.0000 | 0 | Double sheared | DA | LSU rRNA | C | 2364 | G | 2365 | A | 2366 | G | 2367 | * | C | 2350 | G | 2351 | A | 2352 | G | 2353 | cWW | tSH | tHS | cWW | ||||
30 | ➜ | 5FDU | 0.1117 | 0 | 1A | LSU rRNA | C | 2376 | G | 2377 | A | 2378 | G | 2379 | * | C | 2362 | G | 2363 | A | 2364 | G | 2365 | cWW | tSH | tHS | cWW | |||||
31 | ➜ | 4IOA | 0.1189 | 0 | Double sheared | X | LSU rRNA | C | 2343 | G | 2344 | A | 2345 | G | 2346 | * | C | 2329 | G | 2330 | A | 2331 | G | 2332 | cWW | tSH | tHS | cWW | ||||
32 | ➜ | 1SA9 | 0.2009 | 0 | E | RNA (8-mer) | C | 303 | G | 304 | A | 305 | G | 306 | * | C | 303||||4_675 | G | 304||||4_675 | A | 305||||4_675 | G | 306||||4_675 | cWW | tSH | tHS | cWW | |||||
33 | ➜ | 4IOA | 0.2017 | 0 | Double sheared | X | LSU rRNA | C | 1491 | A | 1492 | A | 1493 | G | 1494 | * | U | 1530 | C | 1531 | A | 1532 | G | 1533 | cWW | tSH | ntHS | cWW | ||||
34 | ➜ | 3J9W | 0.2531 | 0 | BA | LSU rRNA | A | 582 | G | 583 | A | 584 | G | 585 | * | U | 598 | G | 599 | A | 600 | U | 601 | cWW | tSH | tHS | cWW | |||||
35 | ➜ | 5J7L | 0.2479 | 0 | Double sheared | DA | LSU rRNA | G | 536 | G | 537 | A | 538 | G | 539 | * | U | 554 | G | 555 | A | 556 | C | 557 | cWW | tSH | tHS | cWW | ||||
36 | ➜ | 4V88 | 0.2896 | 0 | Double sheared | A6 | SSU rRNA | G | 196 | A | 197 | A | 198 | G | 199 | * | C | 186 | G | 187 | A | 188 | C | 189 | cWW | tSH | ncSW | tHS | cWW | |||
37 | ➜ | 3J7A | 0.2713 | 0 | A | SSU rRNA | U | 2021 | A | 2022 | A | 2023 | A | 2024 | * | U | 1966 | G | 1967 | A | 1968 | A | 1969 | cWW | tSH | tHS | cWW | |||||
38 | ➜ | 4BTS | 0.2696 | 0 | DA | SSU rRNA | U | 1682 | A | 1683 | A | 1684 | A | 1685 | * | U | 1640 | G | 1641 | A | 1642 | A | 1643 | cWW | tSH | tHS | cWW | |||||
39 | ➜ | 5A2Q | 0.2291 | 0 | 2 | SSU rRNA | C | 1798 | G | 1799 | A | 1800 | A | 1801 | * | U | 1733 | G | 1734 | A | 1735 | G | 1736 | cWW | tSH | tHS | cWW | |||||
40 | ➜ | 3JAM | 0.2905 | 0 | 2 | SSU rRNA | C | 1727 | A | 1728 | A | 1729 | A | 1730 | * | U | 1667 | G | 1668 | A | 1669 | G | 1670 | cWW | tSH | tHS | cWW | |||||
41 | ➜ | 4V88 | 0.2994 | 0 | Double sheared | A6 | SSU rRNA | C | 1729 | A | 1730 | A | 1731 | A | 1732 | * | U | 1669 | G | 1670 | A | 1671 | G | 1672 | cWW | tSH | tHS | cWW | ||||
42 | ➜ | 4ZNP | 0.3679 | 0 | Double sheared | A | pfI Riboswitch | G | 37 | G | 38 | A | 39 | C | 40 | * | G | 9 | G | 10 | A | 11 | C | 12 | cWW | tSH | tHS | cWW | ||||
43 | ➜ | 3J79 | 0.3346 | 3 | A | LSU rRNA | U | 3390 | G | 3391 | A | 3392 | C | 3393 | * | G | 3524 | A | 3525 | A | 3528 | A | 3530 | cWW | tSH | tHS | cWW | |||||
44 | ➜ | 4V8P | 0.3341 | 2 | F1 | LSU rRNA | C | 2993 | G | 2994 | A | 2995 | C | 2996 | * | G | 3128 | G | 3129 | A | 3131 | G | 3133 | cWW | tSH | tHS | cWW | |||||
45 | ➜ | 5AN9 | 0.3403 | 1 | N | LSU rRNA | U | 3340 | A | 3341 | A | 3342 | U | 3343 | * | A | 3475 | G | 3476 | A | 3477 | A | 3479 | cWW | ntSH | tHS | cWW | |||||
46 | ➜ | 4V88 | 0.3220 | 2 | A5 | LSU rRNA | C | 3004 | A | 3005 | A | 3006 | U | 3007 | * | A | 3139 | G | 3140 | A | 3141 | G | 3144 | cWW | tSH | tHS | cWW | |||||
47 | ➜ | 4V91 | 0.3391 | 2 | 1 | LSU rRNA | C | 3004 | A | 3005 | A | 3006 | U | 3007 | * | A | 3139 | G | 3140 | A | 3141 | G | 3144 | cWW | tSH | tHS | cWW | |||||
48 | ➜ | 3J7P | 0.3225 | 1 | 5 | LSU rRNA | C | 4582 | C | 4583 | A | 4584 | U | 4585 | * | A | 4717 | G | 4718 | G | 4719 | G | 4721 | cWW | tHS | cWW | ||||||
49 | ➜ | 4BTS | 0.2664 | 1 | DA | SSU rRNA | U | 37 | A | 38 | A | 39 | A | 40 | * | U | 458 | G | 459 | C | 461 | A | 462 | cWW | tSH | tHS | cWW | |||||
50 | ➜ | 5A2Q | 0.2692 | 1 | 2 | SSU rRNA | C | 37 | A | 38 | A | 39 | A | 40 | * | U | 514 | G | 515 | C | 517 | G | 518 | cWW | tSH | tHS | cWW | |||||
51 | ➜ | 3J7P | 0.2668 | 1 | S2 | SSU rRNA | C | 37 | A | 38 | A | 39 | A | 40 | * | U | 514 | G | 515 | C | 517 | G | 518 | cWW | tSH | tHS | cWW | |||||
52 | ➜ | 5AJ0 | 0.4832 | 1 | A2 | LSU rRNA | C | 4544 | C | 4545 | A | 4546 | U | 4547 | * | A | 4679 | G | 4680 | G | 4681 | G | 4683 | cWW | tHS | cWW | ncWS | |||||
53 | ➜ | 3J7A | 0.6609 | 0 | A | SSU rRNA | G | 1451 | C | 1452 | G | 1453 | G | 1454 | * | C | 1609 | U | 1610 | G | 1621 | C | 1622 | cWW | ncWW | ncWW | ncWW | cWW | ||||
54 | ➜ | 5J7L | 0.6015 | 0 | Other IL | DA | LSU rRNA | A | 2183 | A | 2184 | U | 2185 | G | 2186 | * | C | 2103 | C | 2104 | U | 2105 | U | 2106 | cWW | ncWW | tSH | ncWW | cWW | |||
55 | ➜ | 2IL9 | 0.7125 | 0 | M | Ribosomal Binding Domain of the IRES RNA | U | 6018 | A | 6019 | U | 6020 | U | 6021 | * | A | 6058 | A | 6059 | U | 6060 | A | 6061 | cWW | ncWW | tHS | cWW | ncWS |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
CGAG*CGAG | 9 |
AGAG*CGAU | 6 |
GGAG*UGAC | 4 |
UAAA*UGAA | 2 |
CCAU*AGGCG | 2 |
CAAU*AGAACG | 2 |
CAAA*UGAG | 2 |
CAAA*UGACG | 2 |
GAAG*CGAC | 2 |
AGAG*UGAU | 2 |
UGAC*GAUUAAA | 1 |
GGAC*GGAC | 1 |
CGAC*GGAAAG | 1 |
UAUU*AAUA | 1 |
UAAU*AGAAA | 1 |
UAAA*UGACA | 1 |
GCGG*CUGC | 1 |
AAUG*CCUU | 1 |
CGAA*UGAG | 1 |
GAAG*UGAC | 1 |
AAAG*CGAU | 1 |
GAAG*CAAC | 1 |
CGAU*AGAG | 1 |
CAAG*CAAG | 1 |
UACA*UUAA | 1 |
GGAU*AGAC | 1 |
GAAA*UAAC | 1 |
UAAG*CAAA | 1 |
CGAU*AAAG | 1 |
GGAG*CAAC | 1 |
GGAA*UAAC | 1 |
CAAG*UCAG | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
GA*GA | 25 |
AA*GA | 8 |
AA*AA | 4 |
GA*AA | 3 |
AA*GAC | 3 |
CA*GGC | 2 |
AA*GAAC | 2 |
AU*CU | 1 |
AU*AU | 1 |
CG*UG | 1 |
GA*GAAA | 1 |
AC*UA | 1 |
AA*CA | 1 |
GA*AUUAA | 1 |
AA*GAA | 1 |
Release history
Release | 2.0 |
---|---|
Date | 2017-04-24 |
Status | New id, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Double sheared (13)
- Other IL (1)
- Basepair signature
- cWW-tSH-tHS-cWW
- Heat map statistics
- Min 0.09 | Avg 0.40 | Max 0.97
Coloring options: