IL_85647.5

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4		5		6		7		8	break		9		10		11		12		13		14		15	1-15	2-14	3-13	4-12	5-6	5-11	6-11	7-10	8-9
1	IL_4A1C_008➜	4A1C	0.2124	0		3	5S RRNA	G	71	U	72	U	73	A	74	G	75	U	76	A	77	C	78	*	G	98	G	99	A	100	A	101	G	102	U	103	C	104	cWW	ntWH		tHH	cSH		tWH	tHS	cWW
2	IL_4IOA_007➜	4IOA	0.1821	0	8x7 Sarcin-Ricin; G-bulge	X	LSU rRNA	G	215	U	216	U	217	A	218	G	219	U	220	A	221	G	222	*	C	230	G	231	A	232	A	233	C	234	C	235	C	236	cWW	ntSH	ntSH	tHH	cSH		tWH	tHS	cWW
3	IL_4A1B_003➜	4A1B	0.1559	0		1	26S RRNA	C	80	C	81	C	82	A	83	G	84	U	85	A	86	A	87	*	U	95	G	96	A	97	A	98	C	99	A	100	G	101	cWW		tSH	tHH	cSH		tWH	tHS	cWW
4	IL_1JBR_001➜	1JBR	0.0890	0	8x7 Sarcin-Ricin; G-bulge	C+F	RNA (18-mer) + RNA (13-mer)	C	6	U	7	C	8	A	9	G	10	U	11	A	12	C	13	*	G	18	G	19	A	20	A	21	C	22	C	23	G	24	cWW	ntSH	tSH	tHH	cSH		tWH	tHS	cWW
5	IL_1Q96_001➜	1Q96	0.0000	0	8x7 Sarcin-Ricin; G-bulge	A	sarcin/ricin 28S rRNA	C	6	U	7	C	8	A	9	G	10	U	11	A	12	U	13	*	A	18	G	19	A	20	A	21	C	22	C	23	G	24	cWW	ntSH	tSH	tHH	cSH		tWH	tHS	cWW
6	IL_1Q96_003➜	1Q96	0.1018	0		C	sarcin/ricin 28S rRNA	C	6	U	7	C	8	A	9	G	10	U	11	A	12	U	13	*	A	18	G	19	A	20\|\|A	A	21\|\|A	C	22\|\|A	C	23	G	24	cWW	ntSH	tSH	tHH	cSH		tWH	tHS	cWW
7	IL_3U5H_122➜	3U5H	0.1487	0		5	25S rRNA	C	3018	U	3019	U	3020	A	3021	G	3022	U	3023	A	3024	C	3025	*	G	3030	G	3031	A	3032	A	3033	C	3034	A	3035	G	3036	cWW	ntSH	tSH	tHH	cSH		tWH	tHS	cWW
8	IL_4CUV_127➜	4CUV	0.1754	0		1	25S RRNA	C	3018	U	3019	U	3020	A	3021	G	3022	U	3023	A	3024	C	3025	*	G	3030	G	3031	A	3032	A	3033	C	3034	A	3035	G	3036	cWW	tSH	tSH	tHH	cSH		tWH	tHS	cWW
9	IL_4A1B_118➜	4A1B	0.1947	0		1	26S RRNA	G	3007	U	3008	U	3009	A	3010	G	3011	U	3012	A	3013	C	3014	*	G	3019	G	3020	A	3021	A	3022	C	3023	A	3024	C	3025	cWW	ncSW	ntSH	tHH	ncSH		tWH	tHS	cWW
10	IL_1VW3_011➜	1VW3	0.2739	0		A	21S ribosomal RNA	C	241	U	242	A	243	A	244	G	245	U	246	A	247	A	248	*	U	228	G	229	A	230	A	231	C	232	U	233	G	234	cWW	cWW	tSH	tHH	cSH	ntSS	ntWW	tHS	cWW
11	IL_2QBG_011➜	2QBG	0.1920	0		B	23S rRNA	C	201	U	202	A	203	A	204	G	205	U	206	A	207	C	208	*	G	188	G	189	A	190	A	191	C	192	U	193	G	194	cWW	cWW	tSH	tHH	cSH		tWH	tHS	cWW
12	IL_4IOA_006➜	4IOA	0.2008	0	8x7 Sarcin-Ricin; G-bulge	X	LSU rRNA	C	178	U	179	C	180	A	181	G	182	U	183	A	184	C	185	*	G	165	G	166	A	167	A	168	C	169	U	170	G	171	cWW	cWW	tSH	tHH	cSH		tWH	tHS	cWW
13	IL_4NVV_006➜	4NVV	0.1911	0		A	23S Ribosomal RNA	C	190	U	191	C	192	A	193	G	194	U	195	A	196	C	197	*	G	177	G	178	A	179	A	180	C	181	U	182	G	183	cWW	cWW	tSH	tHH	cSH		tWH	tHS	cWW
14	IL_1S72_006➜	1S72	0.2005	0		0	LSU rRNA	C	171	U	172	C	173	A	174	G	175	U	176	A	177	U	178	*	A	158	G	159	A	160	A	161	C	162	U	163	G	164	cWW	cWW	ntSH	tHH	cSH		tWH	tHS	cWW
15	IL_4CUV_155➜	4CUV	0.2803	1		3	5S RRNA	A	72	C	74	G	75	A	76	G	77	U	78	A	79	G	80	*	C	100	G	101	A	102	A	103	A	104	C	105	U	106	cWW	cWW	tSH	tHH	cSH		tWH	tHS	cWW
16	IL_3U5H_148➜	3U5H	0.2713	1		7	5S rRNA	A	72	C	74	G	75	A	76	G	77	U	78	A	79	G	80	*	C	100	G	101	A	102	A	103	A	104	C	105	U	106	cWW	ncWW	tSH	tHH	cSH		tWH	tHS	cWW
17	IL_1VW3_038➜	1VW3	0.2484	0		A	21S ribosomal RNA	A	1295	U	1296	G	1297	A	1298	G	1299	U	1300	A	1301	A	1302	*	U	1911	G	1912	A	1913	A	1914	A	1915	U	1916	U	1917	cWW	cWW	tSH	tHH	cSH		tWH	tHS	cWW
18	IL_2QBG_048➜	2QBG	0.2867	0		B	23S rRNA	A	1262	U	1263	A	1264	A	1265	G	1266	U	1267	A	1268	A	1269	*	U	2011	G	2012	A	2013	A	2014	A	2015	U	2016	U	2017	cWW	cWW	tSH	tHH	cSH		tWH	tHS	cWW
19	IL_4NVV_048➜	4NVV	0.2738	0		A	23S Ribosomal RNA	A	1308	U	1309	G	1310	A	1311	G	1312	U	1313	A	1314	A	1315	*	U	2033	G	2034	A	2035	A	2036	A	2037	U	2038	U	2039	cWW	cWW	tSH	tHH	cSH		tWH	tHS	cWW
20	IL_4IOA_047➜	4IOA	0.3485	0	8x7 Sarcin-Ricin; G-bulge	X	LSU rRNA	A	1275	U	1276	G	1277	A	1278	G	1279	U	1280	A	1281	A	1282	*	U	1994	G	1995	A	1996	A	1997	A	1998	U	1999	U	2000	cWW	cWW	tSH	ntSH	cSH		tWH	tHS	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
AUGAGUAA*UGAAAUU	3
CUUAGUAC*GGAACAG	2
CUCAGUAU*AGAACCG	2
ACCGAGUAG*CGAAACU	2
GGAACUG*CUCAGUAC	1
CUCAGUAU*AGAACUG	1
AUAAGUAA*UGAAAUU	1
CUCAGUAC*GGAACUG	1
CUAAGUAA*UGAACUG	1
CCCAGUAA*UGAACAG	1
GUUAGUAG*CGAACCC	1
CUCAGUAC*GGAACCG	1
GUUAGUAC*GGAACAC	1
GUUAGUAC*GGAAGUC	1
CUAAGUAC*GGAACUG	1

Non-Watson-Crick part of the motif

Sequence	Counts
UUAGUA*GAACA	3
UGAGUA*GAAAU	3
UCAGUA*GAACC	3
CCGAGUA*GAAAC	2
UCAGUA*GAACU	2
UAAGUA*GAACU	2
UAAGUA*GAAAU	1
UUAGUA*GAACC	1
CCAGUA*GAACA	1
GAACU*UCAGUA	1
UUAGUA*GAAGU	1

Release history

Release	1.15
Date	2014-06-20
Status	Updated, 1 parent

Parent motifs

Parent motif	Common motif instances	Only in IL_85647.5	Only in the parent motif
IL_85647.4 Compare	IL_4A1B_118, IL_3U5H_122, IL_4NVV_006, IL_2QBG_048, IL_1Q96_003, IL_1S72_006, IL_4IOA_047, IL_4A1C_008, IL_3U5H_148, IL_4NVV_048, IL_1JBR_001, IL_1Q96_001, IL_4A1B_003, IL_2QBG_011, IL_4IOA_007, IL_4IOA_006, IL_1VW3_011, IL_1VW3_038	IL_4CUV_155, IL_4CUV_127

Children motifs

Child motif	Common motif instances	Only in IL_85647.5	Only in the child motif
IL_85647.6 Compare	IL_4A1B_118, IL_4A1C_008, IL_3U5H_122, IL_2QBG_048, IL_1Q96_003, IL_4CUV_155, IL_4IOA_047, IL_1S72_006, IL_3U5H_148, IL_1JBR_001, IL_1Q96_001, IL_4A1B_003, IL_2QBG_011, IL_4CUV_127, IL_4IOA_007, IL_4IOA_006, IL_1VW3_011, IL_1VW3_038	IL_4NVV_006, IL_4NVV_048	IL_4QCN_045, IL_1VX6_004, IL_1VWW_144, IL_4QCN_006, IL_1VWW_164, IL_1VX6_144, IL_1VWW_093

Motif IL_85647.5 Version IL_85647.5 of this group appears in releases 1.15 to 1.15 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_85647.5 Version IL_85647.5 of this group appears in releases 1.15 to 1.15

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