5CD1 Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_5CD1_001 | 1/M/13:22 | No text annotation Not in a motif group | homologous HL_5UD5_001 HL_09136.1 | |
| HL_5CD1_003 | 1/M/53:61 | No text annotation Not in a motif group | geometric HL_5TBW_012 HL_86373.2 | |
| HL_5CD1_004 | 1/N/13:22 | No text annotation Not in a motif group | homologous HL_6ORD_035 HL_14843.1 | |
| HL_5CD1_005 | 1/N/33:37 | No text annotation Not in a motif group | homologous HL_5CCB_002 HL_07551.1 | |
| HL_5CD1_006 | 1/N/52:62 | No text annotation Not in a motif group | homologous HL_4WSM_226 HL_22031.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_5CD1_002 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_5CD1_001 | 1/M/31:33, 1/M/37:39 | No text annotation Not in a motif group | homologous IL_5CCB_001 IL_95997.1 | |
| IL_5CD1_003 | 1/N/0:1, 1/N/72:75 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_5TBW_076 IL_50694.2 | |
| IL_5CD1_004 | 1/N/31:33, 1/N/37:39 | No text annotation Not in a motif group | homologous HL_2BTE_002 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_5CD1_002 | No text annotation |
Valid loops
No loops found
Problematic loops
No problematic loops
Coloring options: