Motif HL_22280.2 Version HL_22280.2 of this group appears in releases 3.84 to 3.84

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4		5		6		7	1-7	2-6
1	HL_4WF9_019	4WF9	0.5286	2	Other HL	X	LSU rRNA	C	654	A	655	G	656	U	657	A	659	U	661	G	662	cWW
2	HL_4V9K_035	4V9K	0.3562	2	T-loop with 2 stacked bulged bases	AW	tRNA	G	53	U	54	U	55	C	56	G	57	A	58	C	61	cWW	ntWH
3	HL_4V87_109	4V87	0.2294	2	T-loop with 2 stacked bulged bases	BB	tRNA	G	64	U	65	U	66	C	67	A	68	A	69	C	72	cWW	ntWH
4	HL_5B63_004	5B63	0.1854	2	T-loop with 2 stacked bulged bases	D	tRNA	G	954	U	955	U	956	C	957	G	958	A	959	C	962	cWW	tWH
5	HL_4V90_034	4V90	0.1461	2	T-loop with 2 stacked bulged bases	AV	tRNA	G	53	U	54	U	55	C	56	G	57	A	58	C	61	cWW	tWH
6	HL_6JXM_003	6JXM	0.1004	2	T-loop with 2 stacked bulged bases	B	tRNA	G	74	U	75	U	76	C	77	G	78	A	79	C	82	cWW	tWH
7	HL_3RG5_008	3RG5	0.0934	2	T-loop with 2 stacked bulged bases	B	Selenocysteine transfer RNA	G	53	U	54	U	55	C	56	A	57	A	58	C	61	cWW	tWH
8	HL_8G9Z_004	8G9Z	0.1036	2	T-loop with 2 stacked bulged bases	E	Selenocysteine transfer RNA	G	53\|\|A	U	54\|\|A	U	55\|\|A	C	56\|\|A	A	57\|\|A	A	58\|\|A	C	61\|\|A	cWW	tWH
9	HL_3ZGZ_003	3ZGZ	0.0761	2	T-loop with 2 stacked bulged bases	B	tRNA	G	53	U	54	U	55	C	56	A	57	A	58	C	61	cWW	tWH
10	HL_4LCK_003	4LCK	0.0000	2	T-loop with 2 stacked bulged bases	B	tRNA	G	52	U	53	U	54	C	55	G	56	A	57	C	60	cWW	tWH
11	HL_2DU3_003	2DU3	0.1007	2	T-loop with 2 stacked bulged bases	D	tRNA	G	952	U	953	U	954	C	955	G	956	A	957	C	960	cWW	tWH
12	HL_4X4V_001	4X4V	0.1153	2	T-loop with 2 stacked bulged bases	B	Human MenBeta minihelix ending in CCACC	G	12	U	13	U	14	C	15	G	16	A	17	C	20	cWW	tWH
13	HL_3W3S_004	3W3S	0.0903	2	T-loop with 2 stacked bulged bases	B	Selenocysteine transfer RNA	G	53	U	54	U	55	C	56	G	57	A	58	C	61	cWW	tWH
14	HL_3ADD_004	3ADD	0.0947	2	T-loop with 2 stacked bulged bases	C	Selenocysteine transfer RNA	G	53	U	54	U	55	C	56	A	57	A	58	C	61	cWW	tWH
15	HL_4MGN_004	4MGN	0.0907	2	T-loop with 2 stacked bulged bases	B	tRNA-glycine	G	52	U	53	U	54	C	55	G	56	A	57	C	60	cWW	tWH
16	HL_5WWT_002	5WWT	0.0994	2	T-loop with 2 stacked bulged bases	C	tRNA	G	53	U	54	U	55	C	56	A	57	A	58	C	61	cWW	tWH
17	HL_3FOZ_006	3FOZ	0.1309	2	T-loop with 2 stacked bulged bases	D	tRNA(Phe)	G	53	U	54	U	55	C	56	G	57	A	58	C	61	cWW	tWH
18	HL_2DER_006	2DER	0.1424	2	T-loop with 2 stacked bulged bases	D	tRNA	G	53	U	54	U	55	C	56	G	57	A	58	C	61	cWW	tWH
19	HL_4V8N_145	4V8N	0.2210	2	T-loop with 2 stacked bulged bases	CV	tRNA	G	55	U	56	U	57	C	58	G	59	A	60	C	63	cWW	tWH
20	HL_1GAX_006	1GAX	0.4828	2	T-loop with 2 stacked bulged bases	D	TRNA(VAL)	G	952	U	953	U	954	C	955	A	956	A	957	C	960	cWW	tWH
21	HL_2CSX_003	2CSX	0.2558	2	T-loop with 2 stacked bulged bases	C	RNA (75-MER)	G	53	U	54	U	55	C	56	G	57	A	58	C	61	cWW	tWH
22	HL_1J2B_002	1J2B	0.3106	2	T-loop with 2 stacked bulged bases	C	tRNA(Val)	G	954	U	955	U	956	C	957	A	958	A	959	C	962	cWW	tWH
23	HL_7YSE_003	7YSE	0.1860	2	T-loop with 2 stacked bulged bases	E	tRNA	G	53	U	54	U	55	C	56	G	57	A	58	C	61	cWW	tWH
24	HL_7UQ6_003	7UQ6	0.1681	2	T-loop with 2 stacked bulged bases	B	tRNA	G	64	U	65	U	66	C	67	G	68	A	69	C	72	cWW	tWH
25	HL_8S95_005	8S95	0.1705	2	T-loop with 2 stacked bulged bases	C	Enterovirus 5' cloverleaf cis-acting replication element	G	133	U	134	U	135	C	136	A	137	A	138	C	141	cWW	tWH
26	HL_4WT8_217	4WT8	0.1748	2	T-loop with 2 stacked bulged bases	D4	tRNA	G	54	U	55	U	56	C	57	A	58	A	59	C	62	cWW	tWH
27	HL_4V9Q_215	4V9Q	0.1740	2	T-loop with 2 stacked bulged bases	DV	tRNA	G	53	U	54	U	55	C	56	A	57	A	58	C	61	cWW	tWH
28	HL_2BTE_004	2BTE	0.1674	2	T-loop with 2 stacked bulged bases	B	tRNA	G	53	U	54	U	55	C	56	A	57	A	58	C	61	cWW	tWH
29	HL_5AH5_008	5AH5	0.1276	2	T-loop with 2 stacked bulged bases	D	tRNA	G	53	U	54	U	55	C	56	A	57	A	58	C	61	cWW	tWH
30	HL_6UFM_003	6UFM	0.1306	2	T-loop with 2 stacked bulged bases	A	tRNA	G	54	U	55	U	56	C	57	G	58	A	59	C	62	cWW	tWH
31	HL_4RDX_003	4RDX	0.1254	2	T-loop with 2 stacked bulged bases	C	tRNA	G	53	U	54	U	55	C	56	A	57	A	58	C	61	cWW	tWH
32	HL_7KJT_003	7KJT	0.1317	2	T-loop with 2 stacked bulged bases	A	tRNA	G	53	U	54	U	55	C	56	A	57	A	58	C	61	cWW	tWH
33	HL_2ZUE_003	2ZUE	0.1250	2	T-loop with 2 stacked bulged bases	B	tRNA-Arg	G	953	U	954	U	955	C	956	A	957	A	958	C	961	cWW	tWH
34	HL_5X6B_003	5X6B	0.1551	2	T-loop with 2 stacked bulged bases	P	tRNA	G	52	U	53	U	54	C	55	A	56	A	57	C	60	cWW	tWH
35	HL_2ZZM_004	2ZZM	0.1742	2	T-loop with 2 stacked bulged bases	B	RNA (84-MER)	G	53	U	54	U	55	C	56	A	57	A	58	C	61	cWW	tWH
36	HL_5HR6_003	5HR6	0.1509	2	T-loop with 2 stacked bulged bases	C	tRNA	G	52	U	53	U	54	C	55	G	56	A	57	C	60	cWW	tWH
37	HL_4YYE_003	4YYE	0.1344	2	T-loop with 2 stacked bulged bases	C	tRNA	G	53	U	54	U	55	C	56	A	57	A	58	C	61	cWW	tWH
38	HL_5HR7_006	5HR7	0.1518	2	T-loop with 2 stacked bulged bases	D	tRNA	G	52	U	53	U	54	C	55	G	56	A	57	C	60	cWW	tWH
39	HL_4JXZ_003	4JXZ	0.1435	2	T-loop with 2 stacked bulged bases	B	tRNA	G	953	U	954	U	955	C	956	G	957	A	958	C	961	cWW	tWH
40	HL_1J1U_003	1J1U	0.1296	2	T-loop with 2 stacked bulged bases	B	tRNA(Tyr)	G	554	U	555	U	556	C	557	A	558	A	559	C	562	cWW	tWH
41	HL_5AXM_003	5AXM	0.1426	2	T-loop with 2 stacked bulged bases	P	tRNA	G	53	U	54	U	55	C	56	G	57	A	58	C	61	cWW	tWH
42	HL_4YCO_003	4YCO	0.1171	2	T-loop with 2 stacked bulged bases	D	tRNA	G	53	U	54	U	55	C	56	G	57	A	58	C	61	cWW	tWH
43	HL_7MRL_003	7MRL	0.1282	2	T-loop with 2 stacked bulged bases	A	tRNA	G	56	U	57	U	58	C	59	A	60	A	61	C	64	cWW	tWH
44	HL_7E8O_003	7E8O	0.1181	2	T-loop with 2 stacked bulged bases	X	tRNA	G	52	U	53	U	54	C	55	G	56	A	57	C	60	cWW	tWH
45	HL_1QTQ_003	1QTQ	0.1599	2	T-loop with 2 stacked bulged bases	B	tRNA	G	953	U	954	U	955	C	956	G	957	A	958	C	961	cWW	tWH
46	HL_6PMO_005	6PMO	0.1687	2	T-loop with 2 stacked bulged bases	B	tRNA	G	53	U	54	U	55	C	56	G	57	A	58	C	61	cWW	tWH
47	HL_3AL0_003	3AL0	0.1578	2	T-loop with 2 stacked bulged bases	E	tRNA	G	53	U	54	U	55	C	56	G	57	A	58	C	61	cWW	tWH
48	HL_2ZZN_006	2ZZN	0.1389	2	T-loop with 2 stacked bulged bases	D	RNA (71-MER)	G	53	U	54	U	55	C	56	A	57	A	58	C	61	cWW	tWH
49	HL_3WQY_003	3WQY	0.1154	2	T-loop with 2 stacked bulged bases	C	tRNA	G	1653	U	1654	U	1655	C	1656	A	1657	A	1658	C	1661	cWW	tWH
50	HL_7LYF_003	7LYF	0.1130	2	T-loop with 2 stacked bulged bases	A	Dengue virus SLA	G	116	U	117	U	118	C	119	A	120	A	121	C	124	cWW	tWH
51	HL_4WJ4_003	4WJ4	0.1142	2	T-loop with 2 stacked bulged bases	B	tRNA	G	53	U	54	U	55	C	56	G	57	A	58	C	61	cWW	tWH
52	HL_2AZX_006	2AZX	0.1538	2	T-loop with 2 stacked bulged bases	D	72-MER	G	553	U	554	U	555	C	556	G	557	A	558	C	561	ncWW	tWH
53	HL_3AMU_003	3AMU	0.1872	2	T-loop with 2 stacked bulged bases	B	tRNA	G	53	U	54	U	55	C	56	G	57	A	58	C	61	cWW	tWH
54	HL_1WZ2_008	1WZ2	0.1955	2	T-loop with 2 stacked bulged bases	D	tRNA	G	965	U	966	U	967	C	968	G	969	A	970	C	973	cWW	tWH
55	HL_2D6F_006	2D6F	0.1965	2	T-loop with 2 stacked bulged bases	F	tRNA	G	953	U	954	U	955	C	956	G	957	A	958	C	961	cWW	tWH
56	HL_5UD5_003	5UD5	0.2388	2	T-loop with 2 stacked bulged bases	C	tRNA	G	53	U	54	U	55	A	56	G	57	A	58	C	61	cWW	tWH
57	HL_2DRA_001	2DRA	0.2420	2	T-loop with 2 stacked bulged bases	B	tRNA (34-MER)	G	12	U	13	U	14	C	15	G	16	A	17	C	20	cWW	tWH
58	HL_7MDL_004	7MDL	0.1623	2	T-loop with 2 stacked bulged bases	E	Selenocysteine transfer RNA	G	53\|\|A	U	54\|\|A	U	55\|\|A	C	56\|\|A	A	57\|\|A	A	58\|\|A	C	61\|\|A	cWW	tWH
59	HL_3OVB_001	3OVB	0.2215	2	T-loop with 2 stacked bulged bases	C	RNA (35-MER)	G	12	U	13	U	14	C	15	A	16	A	17	C	20	cWW	tWH
60	HL_3VJR_001	3VJR	0.3194	2	T-loop with 2 bulged bases not stacked	B	tRNA CCA-acceptor	G	13	U	14	U	15	C	16	G	17	A	18	C	21	cWW	tWH
61	HL_6NWY_035	6NWY	0.2938	2	T-loop with 2 stacked bulged bases	QV	tRNA	G	53	U	54	U	55	C	56	G	57	A	58	C	61	cWW	ntWH
62	HL_2ZNI_003	2ZNI	0.3421	2	T-loop with 2 stacked bulged bases	C	bacterial tRNA	G	53	U	54	G	55	A	56	A	57	A	58	C	61	cWW	tWH
63	HL_6ORD_037	6ORD	0.4270	2	T-loop with 2 stacked bulged bases	QY	tRNA	G	53	U	54	U	55	C	56	G	57	A	58	C	61	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GUUCGAAUC	16
GUUCAAGUC	11
GUUCAAAUC	11
GUUCGAGUC	9
GUUCGAUUC	5
GUUCAAUUC	4
GUUCGAUCC	3
CAGUAAAUG	1
GUUCGACUC	1
GUUAGAUUC	1
GUGAAACUC	1

Non-Watson-Crick part of the motif

Sequence	Counts
UUCGAAU	16
UUCAAGU	11
UUCAAAU	11
UUCGAGU	9
UUCGAUU	5
UUCAAUU	4
UUCGAUC	3
AGUAAAU	1
UUCGACU	1
UUAGAUU	1
UGAAACU	1

Release history

Release	3.84
Date	2024-05-22
Status	Updated, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: T-loop with 2 stacked bulged bases (61)
T-loop with 2 bulged bases not stacked (1)
Other HL (1)
Basepair signature: cWW-tWH-F-F-F
Heat map statistics: Min 0.06 | Avg 0.21 | Max 0.86

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Coloring options: Nucleotide numbers

Motif HL_22280.2 Version HL_22280.2 of this group appears in releases 3.84 to 3.84 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif HL_22280.2 Version HL_22280.2 of this group appears in releases 3.84 to 3.84

Download

Csv

Json