Motif HL_87219.4 Version HL_87219.4 of this group appears in releases 3.18 to 3.76
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 1-10 | 2-9 | 2-10 | 3-7 | 3-8 | 4-8 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4WSM_226 | 4WSM | 0.7081 | 1 | 3L | tRNA | G | 63 | G | 64 | U | 65 | U | 66 | C | 67 | A | 68 | A | 69 | U | 71 | C | 72 | C | 73 | cWW | ncWW | ntWH | ||||
| 2 | HL_4V88_208 | 4V88 | 0.3085 | 1 | A6 | SSU rRNA | G | 997 | A | 998 | U | 999 | C | 1000 | A | 1001 | G | 1002 | A | 1003 | A | 1005 | C | 1006 | C | 1007 | cWW | ||||||
| 3 | HL_6CZR_088 | 6CZR | 0.1630 | 1 | 1a | SSU rRNA | G | 770 | A | 771 | U | 772 | U | 773 | A | 774 | G | 775 | A | 776 | A | 778 | C | 779 | C | 780 | ncWW | ncWB | |||||
| 4 | HL_4LFB_017 | 4LFB | 0.0751 | 1 | A | SSU rRNA | G | 786 | A | 787 | U | 788 | U | 789 | A | 790 | G | 791 | A | 792 | A | 794 | C | 795 | C | 796 | cWW | ncWB | |||||
| 5 | HL_5J7L_017 | 5J7L | 0.0000 | 1 | AA | SSU rRNA | G | 786 | A | 787 | U | 788 | U | 789 | A | 790 | G | 791 | A | 792 | A | 794 | C | 795 | C | 796 | cWW | ncWB | |||||
| 6 | HL_5J7L_015 | 5J7L | 0.3297 | 0 | AA | SSU rRNA | C | 689 | G | 690 | G | 691 | U | 692 | G | 693 | A | 694 | A | 695 | A | 696 | U | 697 | G | 698 | cWW | tSH | tSH | ||||
| 7 | HL_4LFB_015 | 4LFB | 0.3663 | 0 | A | SSU rRNA | C | 689 | G | 690 | G | 691 | U | 692 | G | 693 | A | 694 | A | 695 | A | 696 | U | 697 | G | 698 | cWW | tSH | tSH | ||||
| 8 | HL_6CZR_086 | 6CZR | 0.3714 | 0 | 1a | SSU rRNA | C | 673 | G | 674 | G | 675 | U | 676 | G | 677 | A | 678 | A | 679 | A | 680 | U | 681 | G | 682 | cWW | tSH | tSH | ||||
| 9 | HL_4V88_206 | 4V88 | 0.4594 | 0 | A6 | SSU rRNA | A | 900 | G | 901 | G | 902 | U | 903 | G | 904 | A | 905 | A | 906 | A | 907 | U | 908 | U | 909 | cWW | ntSH | |||||
| 10 | HL_5TBW_028 | 5TBW | 0.6523 | 0 | 1 | LSU rRNA | G | 1266 | U | 1267 | G | 1268 | U | 1269 | A | 1270 | A | 1271 | C | 1272 | A | 1273 | A | 1274 | C | 1275 | ncWW | ncWW | |||||
| 11 | HL_3R9X_001 | 3R9X | 0.6304 | 0 | C | RNA301 | A | 1513 | G | 1514 | G | 1515 | G | 1516 | G | 1517 | A | 1518 | A | 1519 | C | 1520 | C | 1521 | U | 1522 | cWW | ncWW | ncWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAUUAGAUACC | 3 |
| CGGUGAAAUG | 3 |
| GGUUCAAGUCC | 1 |
| GAUCAGAUACC | 1 |
| AGGUGAAAUU | 1 |
| GUGUAACAAC | 1 |
| AGGGGAACCU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GGUGAAAU | 4 |
| AUUAGAUAC | 3 |
| GUUCAAGUC | 1 |
| AUCAGAUAC | 1 |
| UGUAACAA | 1 |
| GGGGAACC | 1 |
Release history
| Release | 3.18 | 3.19 | 3.20 | 3.21 | 3.22 | 3.23 | 3.24 | 3.25 | 3.26 | 3.27 | 3.28 | 3.29 | 3.30 | 3.31 | 3.32 | 3.33 | 3.34 | 3.35 | 3.36 | 3.37 | 3.38 | 3.39 | 3.40 | 3.41 | 3.42 | 3.43 | 3.44 | 3.45 | 3.46 | 3.47 | 3.48 | 3.49 | 3.50 | 3.51 | 3.52 | 3.53 | 3.54 | 3.55 | 3.56 | 3.57 | 3.58 | 3.59 | 3.60 | 3.61 | 3.62 | 3.63 | 3.64 | 3.65 | 3.66 | 3.67 | 3.68 | 3.69 | 3.70 | 3.71 | 3.72 | 3.73 | 3.74 | 3.75 | 3.76 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2019-05-03 | 2019-05-31 | 2019-06-28 | 2019-07-26 | 2019-08-23 | 2019-09-19 | 2019-10-16 | 2019-11-13 | 2019-12-11 | 2020-01-08 | 2020-02-05 | 2020-03-04 | 2020-04-01 | 2020-04-29 | 2020-05-27 | 2020-06-24 | 2020-07-22 | 2020-08-19 | 2020-09-16 | 2020-10-14 | 2020-11-11 | 2020-12-09 | 2021-01-06 | 2021-02-03 | 2021-03-03 | 2021-03-31 | 2021-04-28 | 2021-05-26 | 2021-06-23 | 2021-07-21 | 2021-08-18 | 2021-09-15 | 2021-10-13 | 2021-11-10 | 2021-12-08 | 2022-01-05 | 2022-02-02 | 2022-03-02 | 2022-03-30 | 2022-04-27 | 2022-05-25 | 2022-06-22 | 2022-07-20 | 2022-08-17 | 2022-10-12 | 2022-11-09 | 2022-12-07 | 2023-01-04 | 2023-02-01 | 2023-03-01 | 2023-03-29 | 2023-04-26 | 2023-05-24 | 2023-06-21 | 2023-07-19 | 2023-08-16 | 2023-09-13 | 2023-10-11 | 2023-11-08 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
- Basepair signature
- cWW-R-tSH-R-R-R-R
- Heat map statistics
- Min 0.07 | Avg 0.49 | Max 0.96
Coloring options: