IL_29549.1

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)		1		2		3		4		5	break		6		7		8		9		10		11		12	1-12	2-10	2-11	3-10	3-11	4-7	4-9	5-6	5-10	6-10
1	IL_4WF9_046	4WF9	0.4338	1	Kink-turn	X	U	1272	G	1273	G	1274	A	1275	G	1276	*	C	1246	G	1247	U	1248	G	1250	A	1251	A	1252	G	1253	cWW		tSH	ntSH				cWW
2	IL_4IOA_045	4IOA	0.3433	1	Kink-turn	X	U	1247	G	1248	G	1249	A	1250	G	1251	*	C	1221	G	1222	G	1223	G	1225	A	1226	A	1227	G	1228	cWW		tSH	tSH			tHS	cWW
3	IL_4V9F_048	4V9F	0.3551	1	Kink-turn	0	U	1338	G	1339	G	1340	A	1341	C	1342	*	G	1312	A	1313	U	1314	G	1316	A	1317	A	1318	G	1319	cWW		tSH	tSH		ntSs	tHS	cWW
4	IL_4V8P_220	4V8P	0.3853	1	Kink-turn	D1	U	1441	G	1442	G	1443	A	1444	G	1445	*	C	1414	C	1415	U	1416	G	1418	A	1419	A	1420	G	1421	cWW		tSH	ntSH		ntSs	tHS	cWW
5	IL_5J7L_288	5J7L	0.2331	1	Kink-turn	DA	U	1234	G	1235	G	1236	A	1237	G	1238	*	C	1208	U	1209	G	1210	G	1212	A	1213	A	1214	G	1215	cWW		tSH	tSH		tSs	tHS	cWW
6	IL_4Y4O_223	4Y4O	0.2040	1	Kink-turn	2A	U	1234	G	1235	G	1236	A	1237	G	1238	*	C	1208	G	1209	A	1210	G	1212	A	1213	A	1214	G	1215	cWW		tSH	tSH			tHS	cWW
7	IL_3V7E_002	3V7E	0.1638	1	Kink-turn	C	U	17	G	18	G	19	A	20	G	21	*	C	31	G	32	A	33	G	35	A	36	A	37	A	38	cWW		tSH			tSs	tHS	cWW
8	IL_3U4M_004	3U4M	0.1322	1	Kink-turn	B	G	2155	G	2156	G	2157	A	2158	G	2159	*	C	2129	U	2130	G	2131	G	2133	A	2134	A	2135	C	2136	cWW		tSH	tSH		tSs	tHS	cWW
9	IL_5FJC_002	5FJC	0.1038	1	Kink-turn	A	G	17	G	18	G	19	A	20	G	21	*	C	31	G	32	A	33\|\|A	G	35	A	36	A	37	C	38	cWW		tSH	tSH		tSs	tHS	cWW
10	IL_5G4T_001	5G4T	0.0000	1	Kink-turn	B+A	G	13\|\|\|\|10_667	G	14\|\|\|\|10_667	G	15\|\|\|\|10_667	A	16\|\|\|\|10_667	G	17\|\|\|\|10_667	*	C	3\|\|\|\|10_667	G	4\|\|\|\|10_667	A	5\|\|\|\|10_667	G	7\|\|\|\|10_667	A	8\|\|\|\|10_667	A	9\|\|\|\|10_667	C	10\|\|\|\|10_667	cWW		tSH	tSH		ntSs	tHS	cWW
11	IL_5G4T_002	5G4T	0.0000	1	Kink-turn	B+A	G	13	G	14	G	15	A	16	G	17	*	C	3	G	4	A	5	G	7	A	8	A	9	C	10	cWW		tSH	tSH		ntSs	tHS	cWW
12	IL_4CS1_001	4CS1	0.0821	1	Kink-turn	A	G	13\|\|\|\|9_769	G	14\|\|\|\|9_769	G	15\|\|\|\|9_769	A	16\|\|\|\|9_769	G	17\|\|\|\|9_769	*	C	3	G	4	A	5	G	7	A	8	A	9	C	10	cWW		tSH	tSH		ntSs	tHS	cWW
13	IL_4CS1_002	4CS1	0.0821	1	Kink-turn	A	G	13	G	14	G	15	A	16	G	17	*	C	3\|\|\|\|9_769	G	4\|\|\|\|9_769	A	5\|\|\|\|9_769	G	7\|\|\|\|9_769	A	8\|\|\|\|9_769	A	9\|\|\|\|9_769	C	10\|\|\|\|9_769	cWW		tSH	tSH		ntSs	tHS	cWW
14	IL_5FJ4_002	5FJ4	0.1383	1	Kink-turn	H	G	3	G	4	G	5	A	6	G	7	*	C	26	G	27	A	28	G	30	A	31	A	32	C	33	cWW		tSH	tSH		ntSs	tHS	cWW
15	IL_4BW0_001	4BW0	0.1732	1	Kink-turn	A	G	3	G	4	G	5	A	6	G	7	*	C	16	G	17	A	18	G	20	A	21	A	22	C	23	cWW		tSH	tSH		ntSs	tHS	cWW
16	IL_4C4W_002	4C4W	0.2513	1	Kink-turn	H	G	3	C	4	A	5	A	6	G	7	*	U	26	G	27	A	28	G	30	A	31	C	32	C	33	cWW		ncWB	tSH		ntSs	tHS	cWW
17	IL_5G4U_006	5G4U	0.2778	1	Kink-turn	I+J	G	13	U	14	G	15	A	16	G	17	*	C	3	G	4	A	5	G	7	A	8	U	9	C	10	cWW		ncwW	tSH		ntSs	tHS	cWW
18	IL_5G4U_005	5G4U	0.3101	1	Kink-turn	J+I	G	13	U	14	G	15	A	16	G	17	*	C	3	G	4	A	5	G	7	A	8	U	9	C	10	cWW		ncwW	tSH		tSs	tHS	cWW
19	IL_4KQY_002	4KQY	0.2538	1	Kink-turn	A	C	17	A	18	G	19	A	20	G	21	*	C	31	G	32	A	33	G	35	A	36	A	37	G	38	cWW			ntSH		tSs	ntHS	cWW
20	IL_4KQY_007	4KQY	0.2538	1	Kink-turn	A	C	17\|\|\|\|4_555	A	18\|\|\|\|4_555	G	19\|\|\|\|4_555	A	20\|\|\|\|4_555	G	21\|\|\|\|4_555	*	C	31\|\|\|\|4_555	G	32\|\|\|\|4_555	A	33\|\|\|\|4_555	G	35\|\|\|\|4_555	A	36\|\|\|\|4_555	A	37\|\|\|\|4_555	G	38\|\|\|\|4_555	cWW			ntSH		tSs	ntHS	cWW
21	IL_4AOB_007	4AOB	0.3253	1	Kink-turn	A	G	17\|\|\|\|7_555	C	18\|\|\|\|7_555	A	19\|\|\|\|7_555	A	20\|\|\|\|7_555	G	21\|\|\|\|7_555	*	U	31\|\|\|\|7_555	G	32\|\|\|\|7_555	A	33\|\|\|\|7_555	G	35\|\|\|\|7_555	A	36\|\|\|\|7_555	C	37\|\|\|\|7_555	C	38\|\|\|\|7_555	cWW		cWB			tSs	tHS	cWW
22	IL_4AOB_002	4AOB	0.3253	1	Kink-turn	A	G	17	C	18	A	19	A	20	G	21	*	U	31	G	32	A	33	G	35	A	36	C	37	C	38	cWW		cWB			tSs	tHS	cWW
23	IL_4V9F_004	4V9F	0.3160	1	Kink-turn	0	G	77	G	78	G	79	A	80	G	81	*	C	93	G	94	A	95	G	97	A	98	A	99	C	100	cWW		tSH	ntSH		ntSs	tHS	cWW
24	IL_4Y4O_182	4Y4O	0.3743	1	Kink-turn	2A	G	81	G	82	G	83	A	84	G	85	*	C	97	G	98	U	99	G	102	A	103	U	104	C	105	cWW		tSH			ntSs	tHS	cWW	tsS
25	IL_4GXY_005	4GXY	0.3423	1	Kink-turn	A	G	82	G	83	G	84	A	85	G	86	*	C	139	G	140	A	141	G	143	A	144	U	145	C	146	cWW		tSH			ntSs	tHS	cWW		ncsS
26	IL_1T0K_001	1T0K	0.3532	1	Kink-turn	C+D	C	9	G	10	G	11	A	12	G	13	*	C	54	A	55	G	56	G	58	A	59	U	60	G	61	cWW		ntSH			tSs	ntHS	cWW
27	IL_4GMA_003	4GMA	0.4722	1	Kink-turn	Z	A	93	G	94	G	95	A	96	C	97	*	G	143	G	144	A	145	G	147	A	148	G	149	U	150	ncWW		tSH			ntSs	tHS	cWW	ntsS	ncsS
28	IL_4IOA_004	4IOA	0.4627	1	Kink-turn	X	A	80	C	81	G	82	A	83	G	84	*	C	96	U	97	U	98	G	100	A	101	C	102	U	103	cWW		cWB			tSs	tHS	cWW
29	IL_4V88_434	4V88	0.4978	1	Kink-turn	A6	G	895	U	896	C	897	A	898	G	899	*	C	910	U	911	U	912	G	914	A	915	U	916	U	917	ncWW					ntSs	tHS	cWW	tsS	ncsS
30	IL_4WF9_004	4WF9	0.5124	1	Kink-turn	X	G	81	G	82	G	83	A	84	G	85	*	C	97	U	98	U	99	G	101	A	102	U	103	C	104	cWW		tSH	ntsS		ntSs	ntHS	cWW
31	IL_4V9F_031	4V9F	0.5387	2	Kink-turn	0	C	936	C	937	G	938	A	939	G	940	*	U	1026	G	1027	U	1028	G	1031	A	1032	C	1033	G	1034	cWW		cWB			ntSs	tHS	cWW
32	IL_4V5O_098	4V5O	0.7448	2	Kink-turn	BA	U	302	A	303	C	305	A	306	G	307	*	C	339	A	340	G	341	C	343	A	344	C	345	G	346	ncWW	ncWB			cWw	ntSs		cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GGGAG*CGAAGAAC	8
GCAAG*UGAUGACC	3
GUGAG*CGAAGAUC	2
CAGAG*CGACGAAG	2
UGGAG*CGUUGAAG	1
UGGAG*CGGAGAAG	1
UGGAC*GAUGGAAG	1
UGGAG*CCUAGAAG	1
UGGAG*CUGCGAAG	1
UGGAG*CGAUGAAG	1
UGGAG*CGAUGAAA	1
GGGAG*CUGUGAAC	1
GGGAG*CGUGGAUC	1
GGGAG*CGAGGAUC	1
CGGAG*CAGAGAUG	1
AGGAC*GGAUGAGU	1
ACGAG*CUUUGACU	1
GUCAG*CUUGGAUU	1
GGGAG*CUUUGAUC	1
CCGAG*UGUUUGACG	1
UAUCAG*CAGUCACG	1

Non-Watson-Crick part of the motif

Sequence	Counts
GGA*GAAGAA	8
CAA*GAUGAC	3
GGA*GAUGAA	2
UGA*GAAGAU	2
AGA*GACGAA	2
GGA*GUUGAA	1
GGA*GGAGAA	1
GGA*AUGGAA	1
GGA*CUAGAA	1
GGA*UGCGAA	1
GGA*UGUGAA	1
GGA*GUGGAU	1
GGA*GAGGAU	1
GGA*AGAGAU	1
GGA*GAUGAG	1
CGA*UUUGAC	1
UCA*UUGGAU	1
GGA*UUUGAU	1
CGA*GUUUGAC	1
AUCA*AGUCAC	1

Release history

Release	3.2
Date	2018-09-26
Status	New id, no parents

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Motif IL_29549.1 Version IL_29549.1 of this group appears in releases 3.2 to 3.2 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_29549.1 Version IL_29549.1 of this group appears in releases 3.2 to 3.2

Download

Csv

Json