Motif IL_29784.1 Version IL_29784.1 of this group appears in releases 0.5 to 0.5
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 3-6 | 4-5 | 6-7 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3O58_164 | 3O58 | 0.9843 | 1 | 3 | 5.8S ribosomal RNA | U | 64 | A | 65 | A | 66 | U | 67 | * | A | 92 | U | 93 | C | 94 | A | 96 | cWW | cWW | ||||
| 2 | IL_2O3V_002 | 2O3V | 0.7822 | 1 | Decoding loop related | B+A | RNA (23-mer) | A | 38 | A | 39 | A | 41 | G | 42 | * | C | 7 | G | 8 | C | 9 | U | 10 | cWW | cWWa | cWW | ||
| 3 | IL_3O58_154 | 3O58 | 0.6548 | 0 | 1 | 25S ribosomal RNA | U | 3300 | U | 3301 | U | 3302 | G | 3303 | * | C | 3311 | U | 3312 | U | 3313 | A | 3314 | ncWW | cWW | ||||
| 4 | IL_361D_001 | 361D | 0.0000 | 0 | Tandem non-canonical cWW pairs | B | RNA (20-mer) | U | 80 | G | 81 | G | 82 | G | 83 | * | C | 93 | C | 94 | U | 95 | G | 96 | cWW | ncWWa | cWW | ||
| 5 | IL_3O30_028 | 3O30 | 0.7906 | 0 | 1 | 18S ribosomal RNA | G | 487 | G | 488 | C | 489 | C | 490 | * | G | 497 | G | 498 | U | 499 | C | 500 | cWW | ncWB | ncWW | cWW | ncSH | |
| 6 | IL_2O3Y_003 | 2O3Y | 0.9656 | 1 | A+B | RNA (23-mer) | A | 15 | A | 17 | A | 18 | G | 19 | * | C | 30 | G | 31 | C | 32 | U | 33 | cWW | cSW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AAAAG*CGCU | 2 |
| UAAU*AUCGA | 1 |
| UUUG*CUUA | 1 |
| UGGG*CCUG | 1 |
| GGCC*GGUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AAA*GC | 2 |
| AA*UCG | 1 |
| UU*UU | 1 |
| GG*CU | 1 |
| GC*GU | 1 |
Release history
| Release | 0.5 |
|---|---|
| Date | 2011-12-08 |
| Status | New id, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_29784.1 | Only in the parent motif |
|---|---|---|---|
| IL_14877.3 Compare | IL_2O3Y_003 | IL_3O30_028, IL_3O58_154, IL_2O3V_002, IL_3O58_164, IL_361D_001 | IL_2NOK_007, IL_2NOK_004, IL_255D_001, IL_2PN4_009, IL_165D_001, IL_2PN4_004, IL_413D_001, IL_280D_002, IL_280D_001, IL_1FJG_029, IL_2DR2_001, IL_1L9A_002, IL_1QBP_008, IL_1QBP_002, IL_1D4R_001, IL_1QBP_005, IL_1D4R_003, IL_2ZJR_040, IL_402D_001, IL_422D_001, IL_1GID_008, IL_1JID_002, IL_1GID_001, IL_1S72_018, IL_1S72_037, IL_1S72_012, IL_1G1X_003, IL_1F7Y_003, IL_1L9A_005 |
| IL_75673.1 Compare | IL_2O3V_002 | IL_3O30_028, IL_3O58_154, IL_3O58_164, IL_2O3Y_003, IL_361D_001 | IL_3BNQ_008, IL_3BNQ_002, IL_1FJG_008, IL_1FJG_055 |
Children motifs
| Child motif | Common motif instances | Only in IL_29784.1 | Only in the child motif |
|---|---|---|---|
| IL_13959.1 Compare | IL_2O3V_002 | IL_361D_001, IL_3O58_154, IL_3O58_164, IL_2O3Y_003, IL_3O30_028 | IL_2ZJR_057, IL_1SAQ_002, IL_2QBG_088, IL_3U5F_085, IL_4A1B_117, IL_3UXR_087, IL_4A1B_132, IL_3U5H_141, IL_3U5H_120, IL_3U5F_088, IL_3D0U_002, IL_2ZJR_082, IL_2XZM_089, IL_2XZM_004, IL_4A1B_005, IL_1FJG_059, IL_4A1B_007, IL_1S72_098, IL_3DIR_002, IL_2QBG_017, IL_3U5F_013, IL_2IL9_002, IL_2AW7_065, IL_1SA9_002, IL_1SA9_001 |
- Annotations
-
- (4)
- Decoding loop related (1)
- Tandem non-canonical cWW pairs (1)
- Basepair signature
- Heat map statistics
- Min 0.58 | Avg 0.80 | Max 1.46
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