#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name for chain 1 2 3 4 5 6break 7 8 9 10 11 121-122-113-104-95-86-7
1 IL_4FAW_0074FAW0.58580AGroup II catalytic intron D1-D4-3U214A215C216A217G218A219*U158A159G160G161U162A163ncWWncWWncWWntHHcWW
2 IL_1VX2_0371VX20.43051218S ribosomal RNAG907A908G909G910C911C912*G873G874A875C876G878C879cWWcWWcWW
3 IL_1VX6_0121VX60.39210A28S ribosomal RNAA186U187U188U189G190A191*U240C241U242U243U244U245cWWcwWcwWncWwncWW
4 IL_1FJG_0301FJG0.09950A SSU rRNAA712G713G714A715A716C717*G673G674A675A676U677U678cWWncWWacWWncwWcWWcWW
5 IL_2AW7_0372AW70.00000A16S ribosomal RNAA712G713G714A715A716U717*A673G674A675A676U677U678cWWncWWacWWncwWcWWcWW
6 IL_1D4R_0021D4R0.44160Other ILB+A29-MER OF MODIFIED SRP RNA HELIX 6G12G13G14A15G16C17*G12G13G14A15G16C17cWWcBWcWBcWW

3D structures

Complete motif including flanking bases
SequenceCounts
UACAGA*UAGGUA1
GAGGCC*GGACCGC1
AUUUGA*UCUUUU1
AGGAAC*GGAAUU1
AGGAAU*AGAAUU1
GGGAGC*GGGAGC1
Non-Watson-Crick part of the motif
SequenceCounts
GGAA*GAAU2
ACAG*AGGU1
AGGC*GACCG1
UUUG*CUUU1
GGAG*GGAG1
Annotations
  • (5)
  • Other IL (1)
  • Basepair signature
    cWW-L-R-cWW-cWW-cWW-cWW
    Heat map statistics
    Min 0.10 | Avg 0.40 | Max 0.69
    Help

    Coloring options:

    IL_4FAW_007:IL_4FAW_007 = 0IL_4FAW_007:IL_1VX2_037 = 0.5374IL_4FAW_007:IL_1VX6_012 = 0.512IL_4FAW_007:IL_1FJG_030 = 0.5876IL_4FAW_007:IL_2AW7_037 = 0.5858IL_4FAW_007:IL_1D4R_002 = 0.693IL_1VX2_037:IL_4FAW_007 = 0.5374IL_1VX2_037:IL_1VX2_037 = 0IL_1VX2_037:IL_1VX6_012 = 0.4282IL_1VX2_037:IL_1FJG_030 = 0.461IL_1VX2_037:IL_2AW7_037 = 0.4305IL_1VX2_037:IL_1D4R_002 = 0.603IL_1VX6_012:IL_4FAW_007 = 0.512IL_1VX6_012:IL_1VX2_037 = 0.4282IL_1VX6_012:IL_1VX6_012 = 0IL_1VX6_012:IL_1FJG_030 = 0.3875IL_1VX6_012:IL_2AW7_037 = 0.3921IL_1VX6_012:IL_1D4R_002 = 0.543IL_1FJG_030:IL_4FAW_007 = 0.5876IL_1FJG_030:IL_1VX2_037 = 0.461IL_1FJG_030:IL_1VX6_012 = 0.3875IL_1FJG_030:IL_1FJG_030 = 0IL_1FJG_030:IL_2AW7_037 = 0.0995IL_1FJG_030:IL_1D4R_002 = 0.4223IL_2AW7_037:IL_4FAW_007 = 0.5858IL_2AW7_037:IL_1VX2_037 = 0.4305IL_2AW7_037:IL_1VX6_012 = 0.3921IL_2AW7_037:IL_1FJG_030 = 0.0995IL_2AW7_037:IL_2AW7_037 = 0IL_2AW7_037:IL_1D4R_002 = 0.4416IL_1D4R_002:IL_4FAW_007 = 0.693IL_1D4R_002:IL_1VX2_037 = 0.603IL_1D4R_002:IL_1VX6_012 = 0.543IL_1D4R_002:IL_1FJG_030 = 0.4223IL_1D4R_002:IL_2AW7_037 = 0.4416IL_1D4R_002:IL_1D4R_002 = 0IL_4FAW_007IL_1VX2_037IL_1VX6_012IL_1FJG_030IL_2AW7_037IL_1D4R_002Discrepancy0.000.100.200.300.400.500.60
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