Motif IL_47174.1 Version IL_47174.1 of this group appears in releases 0.6 to 0.6

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3	break		4		5		6	1-5	1-6	2-3	2-5	2-6	3-4	3-5
1	IL_2ZJR_063	2ZJR	0.9670	4	Intercalated tWH (H)	X	LSU rRNA	C	1973	U	1974	U	1976	*	A	1686	C	1687	G	1691		cWW				cWW
2	IL_3UXR_064	3UXR	0.9299	4		A	23S ribosomal RNA	C	1990	U	1991	U	1993	*	A	1669	C	1670	G	1674		cWW				cWW
3	IL_2QBG_065	2QBG	0.9043	4		B	23S rRNA	C	1990	U	1991	U	1993	*	A	1669	C	1670	G	1674		cWW				cWW
4	IL_2QBG_083	2QBG	0.6773	0		B	23S rRNA	C	2232	U	2233	G	2234	*	U	2085	U	2086	G	2087		cWW		cwW		cWW
5	IL_1O9M_004	1O9M	0.6664	0		A+B	EUBACTERIAL A-SITE	G	1494	U	1495	C	1496	*	G	1405	U	1406	C	1407		cWW		cWw		cWW
6	IL_3RG5_001	3RG5	0.6223	0	Isolated non-canonical cWW pair (H)	A	Selenocysteine transfer RNA	A	5\|\|\|B	U	6	G	7	*	C	66	U	67	U	67\|\|\|A		cWW		cwW		cWW
7	IL_3BNP_004	3BNP	0.6690	0		A+B	A site of human mitochondrial ribosome, A chain + A site of human mitochondrial ribosome, B chain	G	18	U	19	C	20	*	G	3	U	4	C	5		cWW		cWw		cWW
8	IL_3U5F_063	3U5F	0.7123	0		6	18S rRNA	G	1213	U	1214	C	1215	*	G	1448	U	1449	U	1450		cWW		ncWw		cWW
9	IL_1S72_047	1S72	0.6552	0		0	LSU rRNA	C	1303	U	1304	C	1305	*	G	1349	U	1350	G	1351		cWW		cWw		cWW
10	IL_4A1B_083	4A1B	0.5956	0		1	26S RRNA	G	1964	C	1965	U	1966	*	A	2102	A	2103	C	2104		cWW		cWW		cWW
11	IL_1MZP_001	1MZP	0.6529	0	Isolated non-canonical cWW pair	B	fragment of 23S rRNA	C	50	U	51	U	52	*	A	4	U	5	G	6		cWW		cWw		cWW
12	IL_3U5F_065	3U5F	0.7843	0		6	18S rRNA	A	1234	C	1235	A	1236	*	U	1249	U	1250	U	1251		cWW				cWW
13	IL_2XZM_012	2XZM	0.6067	0		A	18S RRNA	U	156	G	157	G	158	*	C	144	G	145	A	146		cWW				cWW
14	IL_2O3X_004	2O3X	0.6688	0	Isolated non-canonical cWW pair	B+A	RNA (23-mer)	G	28	U	29	C	30	*	G	19	U	20	C	21		cWW		cwW		cWW
15	IL_3U5H_087	3U5H	0.6823	0		5	25S rRNA	A	2106	A	2107	C	2108	*	G	1940	C	1941	U	1942		cWW		cWW		cWW
16	IL_3NJ7_005	3NJ7	0.6169	0		F+E	RNA (10-mer)	C	6	A	7	G	8	*	C	3	A	4	G	5		cWW				cWW
17	IL_2QEK_001	2QEK	0.7659	1		A+B	HIV-1 subtype F DIS genomic RNA	G	7	A	8	G	10	*	C	15	A	16	C	17		cWW		cwW		cWW
18	IL_2QBG_085	2QBG	0.7999	0		B	23S rRNA	C	2179	U	2180	U	2181	*	A	2108	U	2109	G	2110		cWW				cWW
19	IL_3LOA_003	3LOA	0.7904	1	Decoding loop with one bulged A	B+A	RNA (23-mer)	G	1491	A	1493	G	1494	*	C	1407	A	1408	C	1409		cWW				cWW
20	IL_2AW7_063	2AW7	0.7857	1		A	16S ribosomal RNA	G	1491	A	1492	G	1494	*	C	1407	A	1408	C	1409		ncWW				cWW
21	IL_1U6B_001	1U6B	0.7632	1	Isolated non-canonical cWW pair	B	197-MER	G	19	C	20	G	22	*	C	29	A	30	C	31		cWW		ncWW		cWW
22	IL_1ZX7_008	1ZX7	0.6932	0		G+H	RNA (15-mer) + RNA (14-mer)	G	10	U	11	C	12	*	G	24	U	25	C	26		cWW		cwW		cWW
23	IL_2QBG_096	2QBG	0.7601	2		B	23S rRNA	G	2574	C	2575	G	2578	*	C	2510	U	2511	C	2512		cWW		cWW		cWW
24	IL_3UXR_095	3UXR	0.7601	2		A	23S ribosomal RNA	G	2574	C	2575	G	2578	*	C	2510	U	2511	C	2512		cWW		ncWW		cWW
25	IL_3UXR_059	3UXR	0.7564	1		A	23S ribosomal RNA	G	1488	U	1489	G	1491	*	C	1499	G	1500	C	1501		cWW			ncWW	cWW
26	IL_3U5H_114	3U5H	0.7618	2		5	25S rRNA	G	2943	U	2944	G	2947	*	C	2879	U	2880	C	2881		cWW		cwW		cWW
27	IL_3U5H_128	3U5H	0.6814	0		5	25S rRNA	U	3280	U	3281	U	3282	*	A	3168	U	3169	A	3170		cWW		cWw		cWW
28	IL_3NJ7_002	3NJ7	0.6124	0		A+B	RNA (10-mer)	C	6	A	7	G	8	*	C	3	A	4	G	5		cWW				cWW
29	IL_1U9S_007	1U9S	0.7106	0	Isolated non-canonical cWW pair	A	RIBONUCLEASE P	C	191	A	192	C	193	*	G	177	C	178	G	179		cWW		cWW		cWW
30	IL_3U5F_041	3U5F	0.6721	0		6	18S rRNA	A	799	U	800	G	801	*	U	748	U	749	U	750		cWW		cwW		cWW
31	IL_3UXR_080	3UXR	0.6299	0		A	23S ribosomal RNA	C	2085	U	2086	G	2087	*	U	2232	U	2233	G	2234		cWW		cwW		cWW
32	IL_2ZJR_100	2ZJR	0.5429	1		X	LSU rRNA	G	2852	U	2853	C	2855	*	G	2813	G	2814	C	2815		cWW		cWW		cWW
33	IL_2XZM_072	2XZM	0.5114	1		A	18S RRNA	C	1311	G	1313	C	1314	*	G	1353	A	1354	G	1355		cWW		ncWW		cWW
34	IL_4A1B_107	4A1B	0.4783	0		1	26S RRNA	G	2812	C	2813	U	2814	*	G	2851	A	2852	U	2853		cWW		cWWa		cWW
35	IL_2ZJR_107	2ZJR	0.4979	0	Isolated non-canonical cWW pair (H)	Y	5S rRNA	U	82	C	83	G	84	*	C	97	C	98	G	99		cWW		cBW		cWW
36	IL_3U5H_109	3U5H	0.4804	0		5	25S rRNA	G	2824	C	2825	U	2826	*	G	2863	A	2864	U	2865		cWW		cWWa		cWW
37	IL_3BNQ_006	3BNQ	0.4490	0		A+B	A site of human mitochondrial ribosome, A chain	G	19	U	20	C	21	*	G	5	U	6	C	7		cWW		cwW		cWW
38	IL_3KTW_002	3KTW	0.5565	1	Isolated non-canonical cWW with bulges	C	SRP RNA	A	177	U	178	C	180	*	G	152	G	153	U	154		cWW	ncSH	cWW		ncWW
39	IL_2ZJR_019	2ZJR	0.4696	0		X	LSU rRNA	G	767	U	768	C	769	*	G	754	C	755	C	756		cWW		cWW		cWW
40	IL_1S72_024	1S72	0.5036	0	Isolated non-canonical cWW pair (H)	0	LSU rRNA	C	899	U	900	G	901	*	C	763	C	764	G	765		cWW		cWW		cWW
41	IL_4A1B_024	4A1B	0.6216	0		1	26S RRNA	A	610	A	611	C	612	*	G	555	A	556	U	557		cWW		ncwW		cWW
42	IL_2QBG_018	2QBG	0.5095	0		B	23S rRNA	A	575	U	576	G	577	*	C	564	C	565	U	566		cWW		cWW		cWW
43	IL_3IVK_004	3IVK	0.4741	0		C	class I ligase product	A	102	A	103	C	104	*	G	87	G	88	U	89		cWW		cWW		cWW
44	IL_2ZJR_010	2ZJR	0.5051	0		X	LSU rRNA	A	584	U	585	G	586	*	C	573	C	574	U	575		cWW		cWW		cWW
45	IL_1FJG_062	1FJG	0.4727	0		A	SSU rRNA	G	1435	U	1436	C	1437	*	G	1464	C	1465	C	1466		cWW		cWW		cWW
46	IL_3U5H_022	3U5H	0.4696	0		5	25S rRNA	G	792	C	793	U	794	*	G	668	U	669	C	670		cWW		cWW		cWW
47	IL_2XZM_075	2XZM	0.5221	0		A	18S RRNA	C	1323	U	1324	G	1325	*	U	1341	U	1342	G	1343		cWW		ncWw		ncWW
48	IL_3RW6_004	3RW6	0.4994	0	Isolated non-canonical cWW pair	H	constitutive transport element(CTE)of Mason-Pfizer monkey virus RNA	C	33	U	34	G	35	*	C	24	C	25	G	26		cWW		cWW		cWW
49	IL_3UXR_015	3UXR	0.5160	0		A	23S ribosomal RNA	A	575	U	576	G	577	*	C	564	C	565	U	566		cWW		cWW		cWW
50	IL_3GLP_001	3GLP	0.4966	0		A+B	RNA (8-mer)	C	2	U	3	G	4	*	C	5\|\|A	U	6	G	7		cWW				cWW
51	IL_1T0D_004	1T0D	0.4325	0		D+C	RNA (16-mer)	G	24	U	25	C	26	*	G	10	U	11	C	12		cWW		cWw		cWW
52	IL_3TD0_001	3TD0	0.4447	0	Isolated non-canonical cWW pair	A+B	RNA (23-mer)	G	5	U	6	C	7	*	G	42	U	43	C	44		cWW		ncWw		cWW
53	IL_4A1B_034	4A1B	0.5047	0		1	26S RRNA	C	963	U	964	G	965	*	C	828	C	829	G	830		cWW		cWW		cWW
54	IL_1FJG_044	1FJG	0.5384	0		A	SSU rRNA	G	1061	U	1062	C	1063	*	G	1193	U	1194	C	1195		cWW		cwW		cWW
55	IL_3U5H_076	3U5H	0.4718	0		5	25S rRNA	G	1661	G	1662	C	1663	*	G	1786	A	1787	C	1788		cWW		cWW		cWW
56	IL_2QBG_030	2QBG	0.3998	0		B	23S rRNA	G	856	G	857	G	858	*	U	919	A	920	C	921		cWW		cWW		cWW
57	IL_1NLC_002	1NLC	0.3575	1		B+A	HIV-1 DIS(MAL) genomic RNA	G	7\|\|A	G	9\|\|A	G	10	*	C	15	A	16	C	17		cWW		cWW		cWW
58	IL_3U5H_051	3U5H	0.4817	0		5	25S rRNA	A	1120	U	1121	U	1122	*	A	1136	C	1137	U	1138		cWW		cWW		cWW
59	IL_3U5F_034	3U5F	0.4356	0		6	18S rRNA	A	973	A	974	C	975	*	G	624	C	625	U	626		cWW		cWW		cWW
60	IL_1ZX7_004	1ZX7	0.4587	0	Isolated non-canonical cWW pair	D+C	RNA (14-mer)	G	24	U	25	C	26	*	G	10	U	11	C	12		cWW		cWw		cWW
61	IL_3BNP_001	3BNP	0.4508	0		B+A	A site of human mitochondrial ribosome, B chain	G	17	U	18	C	19	*	G	4	U	5	C	6		cWW		cWw		cWW
62	IL_4A1B_048	4A1B	0.3308	0		1	26S RRNA	A	1035	G	1036	A	1037	*	U	1065	A	1066	U	1067		ncWW		ncWW		cWW
63	IL_1MFQ_003	1MFQ	0.2025	0	Isolated non-canonical cWW pair	A	SRP RNA	A	163	G	164	G	165	*	U	132	A	133	U	134		cWW		ncWW		cWW
64	IL_1ZEV_005	1ZEV	0.1527	0		A+B	RNA (18-mer)	C	13\|\|A	U	14\|\|A	G	15\|\|A	*	C	4\|\|A	U	5\|\|A	G	6\|\|A		cWW		ncwW		cWW
65	IL_2ZKO_001	2ZKO	0.1031	0	Isolated non-canonical cWW pair	D+C	RNA (21-mer)	U	9	U	10	A	11	*	U	9	U	10	A	11		cWW				cWW
66	IL_3U5F_089	3U5F	0.0000	0		6	18S rRNA	G	1672	G	1673	C	1674	*	G	1727	A	1728	C	1729		cWW		cWW		cWW
67	IL_3GLP_002	3GLP	0.0940	0		A+B	RNA (8-mer)	C	5	U	6	G	7	*	C	2\|\|A	U	3\|\|A	G	4				ncWw		cWW
68	IL_3GLP_003	3GLP	0.0962	0		D+C	RNA (8-mer)	C	5	U	6	G	7	*	C	2	U	3	G	4						cWW
69	IL_3GLP_004	3GLP	0.1128	0		D+C	RNA (8-mer)	C	2	U	3	G	4	*	C	5	U	6\|\|A	G	7		cWW
70	IL_1FJG_056	1FJG	0.2013	0		A	SSU rRNA	G	1405	U	1406	C	1407	*	G	1494	U	1495	C	1496		cWW		ncWw		cWW
71	IL_1RPU_001	1RPU	0.2018	0	Isolated non-canonical cWW pair	D+C	RNA (21-mer)	U	9\|\|A	C	10\|\|A	A	11\|\|A	*	U	9\|\|A	C	10\|\|A	A	11\|\|A		cWW		ncBW		cWW
72	IL_2AW7_062	2AW7	0.2456	0		A	16S ribosomal RNA	G	1405	U	1406	C	1407	*	G	1494	U	1495	C	1496		cWW		ncWw		cWW
73	IL_2XZM_060	2XZM	0.2622	0		A	18S RRNA	C	1145	C	1146	U	1147	*	G	1435	C	1436	G	1437		cWW		ncWB		ncWW
74	IL_4A1B_041	4A1B	0.3462	0		1	26S RRNA	U	979	U	980	U	981	*	A	990	U	991	A	992		cWW		cWw		cWW
75	IL_3U5H_121	3U5H	0.3745	0		5	25S rRNA	A	3040	U	3041	U	3042	*	A	3012	U	3013	U	3014		cWW		cWw		cWW
76	IL_4A1B_115	4A1B	0.4365	0		1	26S RRNA	A	2914	C	2915	C	2916	*	G	2906	A	2907	U	2908		cWW		cWW		cWW
77	IL_1YZ9_001	1YZ9	0.2922	0	Isolated non-canonical cWW pair	C+D	RNA (11-mer)	A	4	C	5	U	6	*	A	15	C	16	U	17		cWW		ncWB		cWW
78	IL_1XJR_003	1XJR	0.3518	1	Isolated non-canonical cWW pair	A	s2m RNA	G	32	G	34	G	35	*	C	16	A	17	C	18		cWW		cWW		cWW
79	IL_2Q1R_002	2Q1R	0.3673	0		A	RNA (12-mer)	C	1003\|\|\|\|2_755	G	1004\|\|\|\|2_755	A	1005\|\|\|\|2_755	*	U	1008	A	1009	G	1010		cWW		cWW		cWW
80	IL_3BNQ_007	3BNQ	0.3673	0		D+C	A site of human mitochondrial ribosome, B chain	G	17	U	18	C	19	*	G	5	U	6	C	7		cWW		cWw		cWW
81	IL_3D0U_006	3D0U	0.4065	0	Isolated non-canonical cWW pair	A	Lysine Riboswitch RNA	G	112	G	113	G	114	*	C	134	A	135	C	136		cWW		cWW		cWW
82	IL_1ZX7_002	1ZX7	0.4054	0		A+B	RNA (15-mer) + RNA (14-mer)	G	10	U	11	C	12	*	G	24	U	25	C	26		cWW		cwW		cWW
83	IL_3BNL_004	3BNL	0.4334	0		A+B	A site of bacterial ribosome	G	18	U	19	C	20	*	G	4	U	5	C	6		cWW		cWw		cWW
84	IL_157D_001	157D	0.3889	0		A+B	RNA (12-mer)	C	3	G	4	A	5	*	U	20	A	21	G	22		cWW		cWW		cWW
85	IL_5MSF_001	5MSF	0.3789	1	Isolated non-canonical cWW pair	R	RNA (18-mer)	G	3\|\|\|\|P_1	G	4\|\|\|\|P_1	G	6\|\|\|\|P_1	*	C	13\|\|\|\|P_1	A	14\|\|\|\|P_1	C	15\|\|\|\|P_1		cWW		cWW		cWW
86	IL_3U5H_133	3U5H	0.4002	0		5	25S rRNA	G	3252	G	3253	G	3254	*	C	3233	A	3234	C	3235		cWW		cWW		cWW
87	IL_2XZM_001	2XZM	0.3404	0		A	18S RRNA	U	596	U	597	A	598	*	U	21	U	22	A	23		cWW		cWw		cWW
88	IL_3TD0_002	3TD0	0.3363	1	Isolated non-canonical cWW pair	B+A	RNA (23-mer)	G	39	A	40	G	42	*	C	7	G	8	C	9		cWW		cWW		cWW
89	IL_4A1B_015	4A1B	0.3325	0		1	26S RRNA	G	443	A	444	C	445	*	G	532	G	533	U	534		cWW		ncWW		cWW
90	IL_3TD1_001	3TD1	0.3777	0		B+A	RNA (23-mer)	G	42	U	43	C	44	*	G	5	U	6	C	7		cWW		ncwW		cWW
91	IL_3U5F_082	3U5F	0.2984	0		6	18S rRNA	G	1642	U	1643	C	1644	*	G	1757	U	1758	C	1759		cWW				cWW
92	IL_2ZJR_025	2ZJR	0.2333	0	Isolated non-canonical cWW pair (H)	X	LSU rRNA	A	936	C	937	G	938	*	C	864	A	865	U	866		cWW		cWW		cWW
93	IL_3U5H_017	3U5H	0.2353	0		5	25S rRNA	U	429	U	430	U	431	*	A	628	U	629	A	630		cWW				cWW
94	IL_1YZ9_002	1YZ9	0.2240	0	Isolated non-canonical cWW pair	F+E	RNA (11-mer)	A	15	C	16	U	17	*	A	4	C	5	U	6		cWW		ncWB		cWW
95	IL_1ZEV_002	1ZEV	0.2735	0		A+B	RNA (18-mer)	C	4\|\|A	U	5\|\|A	G	6\|\|A	*	C	13\|\|A	U	14\|\|A	G	15\|\|A		cWW				cWW
96	IL_2XZM_037	2XZM	0.3266	1		A	18S RRNA	U	647	U	649	C	650	*	G	659	U	660	G	661		ncWW				ncWW
97	IL_3MEI_002	3MEI	0.3077	0	Isolated non-canonical cWW pair	B+A	RNA (23-mer)	G	13	C	14	C	15	*	G	8	C	9	C	10		cWW		ncWB		cWW
98	IL_2XZM_090	2XZM	0.3201	0		A	18S RRNA	C	1644	C	1645	U	1646	*	A	1679	A	1680	G	1681		cWW				cWW
99	IL_2QBG_020	2QBG	0.3441	0		B	23S rRNA	C	806	U	807	G	808	*	C	672	C	673	G	674		cWW		cWW		cWW
100	IL_2XZM_015	2XZM	0.3183	0		A	18S RRNA	A	254	C	255	U	256	*	A	201	U	202	U	203		cWW		ncWW		cWW
101	IL_3U5H_049	3U5H	0.3183	0		5	25S rRNA	G	1087	U	1088	G	1089	*	C	1069	U	1070	U	1071		cWW		ncWw		cWW
102	IL_3UXR_053	3UXR	0.3275	1		A	23S ribosomal RNA	C	1557	A	1558	G	1560	*	U	1433	A	1434	G	1435		cWW				cWW
103	IL_2XZM_081	2XZM	0.3170	0		A	18S RRNA	G	1518	U	1519	U	1520	*	A	1535	U	1536	C	1537		cWW				cWW
104	IL_4A1B_027	4A1B	0.3317	1		1	26S RRNA	C	577	G	578	G	580	*	C	589	A	590	G	591		cWW				cWW
105	IL_1FJG_006	1FJG	0.3535	0	Isolated non-canonical cWW pair (H)	A	SSU rRNA	C	99	A	101	G	102	*	C	67	G	68	G	69		cWW		cWW		cWW
106	IL_1ZEV_001	1ZEV	0.3376	0		A+B	RNA (18-mer)	C	1\|\|A	U	2\|\|A	G	3\|\|A	*	C	16\|\|A	U	17\|\|A	G	18\|\|A	ncWW	cWW		cWw		cWW
107	IL_2OE5_001	2OE5	0.4044	0	Isolated non-canonical cWW pair	A+B	RNA (16-mer) + RNA (17-mer)	G	1405	U	1406	C	1407	*	G	1494	U	1495	C	1496		cWW		cWw		cWW
108	IL_1NLC_001	1NLC	0.3426	1		A+B	HIV-1 DIS(MAL) genomic RNA	G	7	G	9	G	10	*	C	15	A	16	C	17		cWW		cWW		cWW
109	IL_3TD0_005	3TD0	0.3372	1	Isolated non-canonical cWW pair	A+B	RNA (23-mer)	G	16	A	17	G	19	*	C	30	G	31	C	32		cWW		cWW		cWW
110	IL_2ZJR_013	2ZJR	0.3428	0		X	LSU rRNA	C	819	U	820	A	821	*	U	685	C	686	G	687		cWW		cWW		cWW
111	IL_3U5F_050	3U5F	0.3428	0		6	18S rRNA	U	917	U	918	A	919	*	U	893	U	894	G	895		ncWW		cWw		cWW
112	IL_3U5H_149	3U5H	0.3398	1		7	5S rRNA	A	84	G	85	G	87	*	C	94	A	95	U	96		cWW		cWW		cWW
113	IL_1ZH5_001	1ZH5	0.3153	0	Isolated non-canonical cWW pair	C+D	RNA (9-mer)	C	3	U	4	G	5	*	C	3	U	4	G	5		cWW		ncwW		cWW
114	IL_1ZEV_004	1ZEV	0.2776	0		A+B	RNA (18-mer)	C	10\|\|A	U	11\|\|A	G	12\|\|A	*	C	7\|\|A	U	8\|\|A	G	9\|\|A		cWW		ncWw		cWW
115	IL_2QBG_034	2QBG	0.3306	0		B	23S rRNA	A	905	U	906	G	907	*	U	870	U	871	U	872		cWW		ncWw		cWW
116	IL_2XZM_086	2XZM	0.3356	1		A	18S RRNA	G	1707	A	1708	G	1710	*	C	1616	G	1617	C	1618		cWW		cWW		cWW
117	IL_3FO4_001	3FO4	0.3504	0		A	Guanine riboswitch C74U mutant	U	25	C	26	G	27	*	C	43	A	44	A	45		cWW		cWWa		cWW
118	IL_1U6B_005	1U6B	0.3415	0	Isolated non-canonical cWW pair	B	197-MER	C	100	U	101	U	102	*	A	117	U	118	G	119		cWW		cWw		cWW
119	IL_1ZEV_006	1ZEV	0.3115	0		A+B	RNA (18-mer)	C	16\|\|A	U	17\|\|A	G	18\|\|A	*	C	1\|\|A	U	2\|\|A	G	3\|\|A		cWW		ncWw		cWW
120	IL_3U5F_084	3U5F	0.3154	0		6	18S rRNA	U	1650	A	1651	C	1652	*	G	1748	A	1749	A	1750		cWW		cWw		cWW
121	IL_1MWL_001	1MWL	0.3537	0		A+B	RNA (22-mer)	G	4	U	5	C	6	*	G	40	U	41	C	42		cWW		ncWw		cWW
122	IL_3U5H_036	3U5H	0.3737	0		5	25S rRNA	U	954	U	955	U	956	*	A	965	U	966	A	967		cWW		cWw		cWW
123	IL_405D_002	405D	0.3856	0		A+B	RNA (16-mer)	A	10	A	11	U	12	*	A	21	C	22	U	23		cWW		cWW		cWW
124	IL_3BNQ_001	3BNQ	0.3866	0		B+A	A site of human mitochondrial ribosome, A chain	G	19	U	20	C	21	*	G	5	U	6	C	7		cWW		ncWw		cWW
125	IL_3BNT_006	3BNT	0.4108	0	Isolated non-canonical cWW pair	A	A site of human mitochondrial ribosome	G	18	U	19	C	20	*	G	4\|\|\|\|4_665	U	5\|\|\|\|4_665	C	6\|\|\|\|4_665		cWW		cWw		cWW
126	IL_4A1B_028	4A1B	0.3728	0		1	26S RRNA	G	820	U	821	U	822	*	A	689	U	690	C	691		cWW		ncWw		cWW
127	IL_2O3V_004	2O3V	0.3769	0	Isolated non-canonical cWW pair	A+B	RNA (23-mer)	G	19	U	20	C	21	*	G	28	U	29	C	30		cWW		cWw		cWW
128	IL_1Z7F_001	1Z7F	0.4517	0	Isolated non-canonical cWW pair	A	RNA (16-mer)	A	10\|\|\|\|6_765	A	11\|\|\|\|6_765	U	12\|\|\|\|6_765	*	A	5	C	6	U	7		cWW		cWW		cWW
129	IL_1T0E_002	1T0E	0.4337	0	Isolated non-canonical cWW pair	C+A	RNA (17-mer)	G	14	U	15	C	16	*	G	10\|\|A	U	11	C	12		cWW		cWw		cWW
130	IL_4A1B_071	4A1B	0.4592	0		1	26S RRNA	A	1685	G	1686	C	1687	*	G	1812	A	1813	U	1814		cWW		cWW		cWW
131	IL_4A1C_009	4A1C	0.3207	1		3	5S RRNA	C	92	G	93	C	94	*	G	82	G	83	G	85		cWW				cWW
132	IL_2XZM_058	2XZM	0.4031	0		A	18S RRNA	C	1595	C	1596	G	1597	*	C	1126	A	1127	G	1128		cWW		cWWa		cWW
133	IL_2FQN_004	2FQN	0.4462	0		A+B	RNA (23-mer)	G	19	U	20	C	21	*	G	28	U	29	C	30		cWW		cWw		cWW
134	IL_1KFO_002	1KFO	0.4127	0	Isolated non-canonical cWW pair	A	RNA (19-mer)	G	11\|\|\|\|8_555	A	12\|\|\|\|8_555	G	13\|\|\|\|8_555	*	C	6	C	7	U	8		cWW		cWW		cWW
135	IL_3BNQ_012	3BNQ	0.4503	0		D+C	A site of human mitochondrial ribosome, B chain	G	3	U	4	C	5	*	G	19	U	20	C	21		cWW		cWw		cWW
136	IL_3U5H_118	3U5H	0.4388	0		5	25S rRNA	A	2926	C	2927	C	2928	*	G	2918	A	2919	U	2920		cWW		cWW		cWW
137	IL_1ZX7_006	1ZX7	0.4459	0	Isolated non-canonical cWW pair	F+E	RNA (14-mer)	G	24	U	25	C	26	*	G	10	U	11	C	12		cWW		cWw		cWW
138	IL_405D_001	405D	0.3848	0		B+A	RNA (16-mer)	A	26	A	27	U	28	*	A	5	C	6	U	7		cWW		cWW		cWW
139	IL_3BNL_001	3BNL	0.3882	0		B+A	A site of bacterial ribosome	G	18	U	19	C	20	*	G	4	U	5	C	6		cWW		cWw		cWW
140	IL_3UXR_017	3UXR	0.3443	0		A	23S ribosomal RNA	C	806	U	807	G	808	*	C	672	C	673	G	674		cWW		cWW		cWW
141	IL_2XZM_036	2XZM	0.3319	0		A	18S RRNA	A	665	A	666	C	667	*	G	641	G	642	U	643		cWW		cWW		cWW
142	IL_2XZM_069	2XZM	0.2919	0		A	18S RRNA	U	1262	G	1263	G	1264	*	C	1295	G	1296	A	1297		cWW				cWW
143	IL_3U5F_002	3U5F	0.2980	0		6	18S rRNA	U	35	C	36	U	37	*	A	471	U	472	A	473		cWW		cWW		cWW
144	IL_2ZJR_053	2ZJR	0.3239	1		X	LSU rRNA	G	1573	A	1574	G	1576	*	U	1447	A	1448	C	1449		cWW		ncWw		cWW
145	IL_2XZM_085	2XZM	0.3071	0		A	18S RRNA	G	1614	U	1615	C	1616	*	G	1710	U	1711	C	1712		cWW		ncWw		cWW
146	IL_2XZM_043	2XZM	0.2593	1		A	18S RRNA	G	935	U	936	U	938	*	G	846	A	847	C	848		cWW		ncWW		ncWW
147	IL_2ZJR_079	2ZJR	0.3393	0		X	LSU rRNA	C	2068	U	2069	G	2070	*	U	2211	U	2212	G	2213		cWW		cwW		ncWW
148	IL_2Q1R_001	2Q1R	0.3628	0		A	RNA (12-mer)	C	1003	G	1004	A	1005	*	U	1008\|\|\|\|2_755	A	1009\|\|\|\|2_755	G	1010\|\|\|\|2_755		cWW		cWW		cWW
149	IL_1FJG_010	1FJG	0.3819	0	Isolated non-canonical cWW pair (H)	A	SSU rRNA	G	190\|\|\|K	U	190\|\|\|L	G	191	*	C	186	C	187	C	188		cWW		cWW		cWW
150	IL_3TD0_006	3TD0	0.4035	0	Isolated non-canonical cWW pair	A+B	RNA (23-mer)	G	19	U	20	C	21	*	G	28	U	29	C	30		cWW		cWw		cWW
151	IL_1FJG_058	1FJG	0.4577	0	Isolated non-canonical cWW pair (H)	A	SSU rRNA	G	1486	G	1487	G	1488	*	C	1412	A	1413	U	1414		cWW		cWW		cWW
152	IL_3RW6_008	3RW6	0.4998	0		F	constitutive transport element(CTE)of Mason-Pfizer monkey virus RNA	C	33	U	34	G	35	*	C	24	C	25	G	26		cWW		cWW		cWW
153	IL_3NJ6_001	3NJ6	0.5577	0		A	RNA (10-mer)	C	6\|\|\|\|6_555	A	7\|\|\|\|6_555	G	8\|\|\|\|6_555	*	C	3	A	4	G	5		cWW				cWW
154	IL_3U5F_072	3U5F	0.4837	1		6	18S rRNA	C	1339	A	1341	C	1342	*	G	1383	A	1384	G	1385		cWW		ncwW		cWW
155	IL_3IVK_002	3IVK	0.4728	0	Isolated non-canonical cWW pair	M	class I ligase product	A	102	A	103	C	104	*	G	87	G	88	U	89		cWW		cWW		cWW	ncWW
156	IL_4A1B_013	4A1B	0.4856	0		1	26S RRNA	C	422	U	423	G	424	*	C	656	U	657	G	658		cWW				cWW
157	IL_1T0D_002	1T0D	0.4244	0		B+A	RNA (16-mer)	G	24	U	25	C	26	*	G	10	U	11	C	12		cWW		cWw		cWW
158	IL_3U5F_015	3U5F	0.3712	0		6	18S rRNA	A	257	C	258	U	259	*	A	206	U	207	U	208		cWW		cWW		cWW
159	IL_5MSF_002	5MSF	0.3792	1		S	RNA (18-mer)	G	3\|\|\|\|P_1	G	4\|\|\|\|P_1	G	6\|\|\|\|P_1	*	C	13\|\|\|\|P_1	A	14\|\|\|\|P_1	C	15\|\|\|\|P_1		cWW		cWW		cWW
160	IL_2ZJR_030	2ZJR	0.3009	0	Isolated non-canonical cWW pair (H)	X	LSU rRNA	G	963	A	964	G	965	*	U	974	C	975	C	976		cWW		cWW		cWW
161	IL_1ZEV_003	1ZEV	0.3087	0		B+A	RNA (18-mer)	C	10\|\|A	U	11\|\|A	G	12\|\|A	*	C	7\|\|A	U	8\|\|A	G	9\|\|A		cWW		ncwW		cWW
162	IL_157D_002	157D	0.3944	0		B+A	RNA (12-mer)	C	15	G	16	A	17	*	U	8	A	9	G	10		cWW		cWW		cWW
163	IL_3U5F_036	3U5F	0.3223	0		6	18S rRNA	C	646	G	647	G	648	*	C	686	G	687	G	688		cWW				cWW
164	IL_1UN6_005	1UN6	0.3381	0	Isolated non-canonical cWW pair	F	5S RIBOSOMAL RNA	C	95	U	96	G	97	*	C	79	U	80	G	81		cWW		ncWw		cWW
165	IL_1MFQ_002	1MFQ	0.3147	0	Isolated non-canonical cWW pair	A	SRP RNA	A	228	U	229	C	230	*	G	120	U	121	U	122		cWW		cwW		cWW
166	IL_2XZM_034	2XZM	0.3031	0		A	18S RRNA	A	951	A	952	C	953	*	G	618	C	619	U	620		cWW		cWW		cWW
167	IL_4A1B_104	4A1B	0.4517	0		1	26S RRNA	G	2775	C	2776	U	2777	*	A	2758	A	2759	C	2760		cWW		cWWa		cWW
168	IL_1KFO_003	1KFO	0.4184	0	Isolated non-canonical cWW pair	A	RNA (19-mer)	G	11	A	12	G	13	*	C	6\|\|\|\|8_555	C	7\|\|\|\|8_555	U	8\|\|\|\|8_555		cWW		cWW		cWW
169	IL_3U5F_061	3U5F	0.3276	0		6	18S rRNA	G	1464	C	1465	G	1466	*	C	1173	C	1174	U	1175		cWW		ncBW		cWW
170	IL_2AW7_052	2AW7	0.4411	0		A	16S ribosomal RNA	G	1193	U	1194	C	1195	*	G	1061	U	1062	C	1063		cWW		cWw		cWW
171	IL_2XZM_020	2XZM	0.6111	0		A	18S RRNA	U	397	A	398	C	399	*	G	380	G	381	A	382		cWW				cWW
172	IL_3BNT_001	3BNT	0.4104	0	Isolated non-canonical cWW pair	A	A site of human mitochondrial ribosome	G	18\|\|\|\|4_665	U	19\|\|\|\|4_665	C	20\|\|\|\|4_665	*	G	4	U	5	C	6		cWW		cWw		cWW
173	IL_2AW7_064	2AW7	0.4597	0		A	16S ribosomal RNA	G	1486	G	1487	G	1488	*	C	1412	A	1413	U	1414		cWW		cWW		cWW
174	IL_1MWL_004	1MWL	0.3547	0		A+B	RNA (22-mer)	G	18\|\|A	U	19	C	20	*	G	26	U	27	C	28		cWW		ncwW		cWW
175	IL_2ZJR_036	2ZJR	0.3716	1	Isolated non-canonical cWW pair (H)	X	LSU rRNA	G	1042	A	1043	G	1045	*	C	1132	G	1133	C	1134		cWW		cWW		cWW
176	IL_3UXR_034	3UXR	0.3716	0		A	23S ribosomal RNA	G	952	A	953	G	954	*	U	963	C	964	C	965		cWW		cWW		cWW
177	IL_3CUN_002	3CUN	0.3694	0		C	RNA (92-MER)	U	57	G	58	G	59	*	C	87	A	88	G	89		ncWW		cWW		cWW
178	IL_3DIR_006	3DIR	0.4041	0		A	RNA (174-MER)	G	115	G	116	G	117	*	C	137	A	138	C	139		cWW		cWW		cWW
179	IL_3U5F_043	3U5F	0.3947	1		6	18S rRNA	A	850	U	851	C	852	*	G	819	U	821	U	822		cWW		cwW		cWW
180	IL_3U5H_044	3U5H	0.4371	0		5	25S rRNA	A	1009	G	1010	A	1011	*	U	1039	A	1040	U	1041		cWW		cWW		cWW
181	IL_4A1B_061	4A1B	0.5566	1		1	26S RRNA	A	1454	U	1456	G	1457	*	C	1403	G	1404	U	1405		cWW		cSW		cWW
182	IL_3U5H_008	3U5H	0.4998	0		5	25S rRNA	C	125	U	126	G	127	*	C	141	C	142	G	143		cWW		cWW		cWW
183	IL_3UXR_081	3UXR	0.4940	0		A	23S ribosomal RNA	C	2108	U	2109	G	2110	*	C	2179	U	2180	G	2181		cWW		ncWw		cWW
184	IL_3U5F_087	3U5F	0.4913	0		6	18S rRNA	U	1665	U	1666	A	1667	*	U	1734	U	1735	G	1736		cWW				cWW
185	IL_3TD1_006	3TD1	0.4424	0		B+A	RNA (23-mer)	G	28	U	29	C	30	*	G	19	U	20	C	21		cWW		ncWw		cWW
186	IL_2FQN_001	2FQN	0.4331	0		B+A	RNA (23-mer)	G	42	U	43	C	44	*	G	5	U	6	C	7		cWW		cWw		cWW
187	IL_3U5H_028	3U5H	0.3476	0		5	25S rRNA	C	938	U	939	G	940	*	C	803	C	804	G	805		cWW		cWW		cWW
188	IL_3U5H_116	3U5H	0.6037	0		5	25S rRNA	G	2912	C	2913	G	2914	*	C	2889	A	2890	U	2891		cWW		ncWWa		cWW
189	IL_4A1B_052	4A1B	0.5345	0		1	26S RRNA	A	1147	U	1148	U	1149	*	A	1163	C	1164	U	1165		cWW		cWW		cWW
190	IL_2ZJR_042	2ZJR	0.4989	0	Isolated non-canonical cWW pair (H)	X	LSU rRNA	C	1252	C	1253	G	1254	*	C	1218	C	1219	G	1220		cWW		ncBW		cWW
191	IL_3NJ6_002	3NJ6	0.5919	0		A	RNA (10-mer)	C	6	A	7	G	8	*	C	3\|\|\|\|6_555	A	4\|\|\|\|6_555	G	5\|\|\|\|6_555		cWW				cWW
192	IL_3RG5_002	3RG5	0.6244	0	Isolated non-canonical cWW pair	B	Selenocysteine transfer RNA	A	5\|\|\|B	U	6	G	7	*	C	66	U	67	U	67\|\|\|A		cWW		cwW		cWW
193	IL_4A1B_112	4A1B	0.7135	2		1	26S RRNA	G	2931	U	2932	G	2935	*	C	2867	U	2868	C	2869		cWW		cwW		cWW
194	IL_2QEK_002	2QEK	0.8095	1		B+A	HIV-1 subtype F DIS genomic RNA	G	7	A	9	G	10	*	C	15	A	16	C	17		cWW				cWW
195	IL_1Z7F_002	1Z7F	0.4521	0	Isolated non-canonical cWW pair	A	RNA (16-mer)	A	10	A	11	U	12	*	A	5\|\|\|\|6_765	C	6\|\|\|\|6_765	U	7\|\|\|\|6_765		cWW		cWW		cWW
196	IL_2O3V_001	2O3V	0.6819	0	Isolated non-canonical cWW pair	A+B	RNA (23-mer)	G	5	U	6	C	7	*	G	42	U	43	C	44		cWW		cwW		cWW
197	IL_2ZJR_090	2ZJR	0.7599	2	Isolated non-canonical cWW with bulges (H)	X	LSU rRNA	G	2553	C	2554	G	2557	*	C	2489	U	2490	C	2491		cWW		ncWW		cWW
198	IL_1S72_095	1S72	0.7326	1	Isolated non-canonical cWW with bulges (H)	0	LSU rRNA	G	2900	C	2901	C	2903	*	G	2855	A	2856	C	2857		cWW		ncWW		cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GUC*GUC	36
CUG*CUG	14
CUG*CCG	8
CUG*UUG	4
CAG*CAG	4
GAAG*CAC	4
UUU*AUA	4
CGA*UAG	4
AAU*ACU	4
CUU*AUG	3
AAC*GCU	3
GCGAG*CUC	3
AUG*CCU	3
AAC*GGU	3
GAGG*CAC	3
GGG*CAC	3
GAAG*CGC	3
AUG*CUU	2
GCU*AAC	2
UGG*CGA	2
GUGAG*CUC	2
AUG*UUU	2
GCU*GAU	2
GUC*GCC	2
GGC*GAC	2
AUU*ACU	2
AGA*UAU	2
UUA*UUA	2
ACC*GAU	2
ACU*ACU	2
GGAG*CAC	2
ACU*AUU	2
GUU*AUC	2
UUA*UUG	2
GAG*CCU	2
GGG*CAU	2
GAG*UCC	2
CUGU*ACUUUG	1
CUGU*ACUCUG	1
CUGU*ACUAGG	1
GUC*GUU	1
CUC*GUG	1
ACA*UUU	1
GCCG*CAC	1
GUAG*CGC	1
CAC*GCG	1
GUGC*GGC	1
CUGC*GAG	1
UCG*CCG	1
AUUC*GGU	1
AAC*GAU	1
GCU*GUC	1
GGG*UAC	1
AGG*UAU	1
UCA*UCA	1
CCU*GCG	1
AUU*AUU	1
GAC*GGU	1
ACG*CAU	1
UUUC*GUG	1
GCC*GCC	1
CCU*AAG	1
GUG*CUU	1
CAGG*UAG	1
CGGG*CAG	1
CAG*CGG	1
CUA*UCG	1
AGUG*CAU	1
UCG*CAA	1
UAC*GAA	1
AGC*GAU	1
CGC*GGUG	1
CCG*CAG	1
UCU*AUA	1
GACG*UAC	1
GAC*GUUU	1
GUG*CCC	1
CUAC*GAG	1
CGG*CGG	1
AUC*GUU	1
GCG*CCU	1
UAC*GGA	1
GAUG*CGC	1
UGG*CAG	1
AUC*GUUU	1
AGUG*CGU	1
GCG*CAU	1
CCG*CCG	1
GCAC*GAC	1

Non-Watson-Crick part of the motif

Sequence	Counts
U*U	76
U*C	17
G*A	17
A*C	12
C*A	11
C*C	8
A*A	6
A*G	6
C*U	5
AA*A	4
AG*A	4
G*G	3
CGA*U	3
AA*G	3
UGA*U	2
GA*A	2
UG*CUUU	1
UG*CUCU	1
UG*CUAG	1
CC*A	1
UA*G	1
UG*G	1
UG*A	1
UU*G	1
UU*U	1
GG*A	1
GU*A	1
G*GU	1
AC*A	1
A*UU	1
UA*A	1
AU*G	1
U*UU	1
GU*G	1
CA*A	1

Release history

Release	0.6
Date	2012-04-02
Status	> 2 parents

Parent motifs

Parent motif	Common motif instances	Only in IL_47174.1	Only in the parent motif
IL_24421.1 Compare	IL_2ZJR_019, IL_3KTW_002, IL_2ZJR_013, IL_2ZJR_010, IL_2AW7_052, IL_1NLC_002, IL_1T0E_002, IL_1NLC_001, IL_1O9M_004, IL_1S72_047, IL_2QBG_020, IL_2XZM_036, IL_2XZM_037, IL_1FJG_056, IL_157D_002, IL_157D_001, IL_1ZH5_001, IL_2FQN_001, IL_2FQN_004, IL_2QBG_096, IL_2QBG_018, IL_1FJG_058, IL_3GLP_003, IL_2O3X_004, IL_1Z7F_002, IL_405D_002, IL_1Z7F_001, IL_2XZM_001, IL_3BNL_004, IL_3BNL_001, IL_2ZJR_090, IL_2XZM_085, IL_3CUN_002, IL_2XZM_086, IL_2QBG_083, IL_2ZJR_036, IL_2ZJR_030, IL_3BNQ_001, IL_2QEK_001, IL_1FJG_044, IL_2XZM_015, IL_1ZEV_004, IL_1ZEV_005, IL_1ZEV_006, IL_1ZEV_001, IL_1ZEV_002, IL_1ZEV_003, IL_1U9S_007, IL_2O3V_004, IL_2O3V_001, IL_2XZM_090, IL_2XZM_072, IL_2ZJR_025, IL_3NJ7_002, IL_3NJ7_005, IL_3BNQ_012, IL_1MFQ_003, IL_1MFQ_002, IL_1KFO_003, IL_1KFO_002, IL_5MSF_001, IL_5MSF_002, IL_2XZM_034, IL_1FJG_062, IL_2XZM_075, IL_3BNQ_006, IL_3BNQ_007, IL_3BNP_001, IL_3D0U_006, IL_3BNP_004, IL_3BNT_006, IL_3BNT_001, IL_3IVK_004, IL_3IVK_002, IL_1MWL_004, IL_405D_001, IL_1MWL_001, IL_1T0D_002, IL_1MZP_001, IL_1UN6_005, IL_2XZM_043, IL_2XZM_020, IL_2AW7_062, IL_1FJG_010, IL_3DIR_006, IL_2ZKO_001, IL_2ZJR_100, IL_1FJG_006, IL_2OE5_001, IL_2XZM_058, IL_2Q1R_002, IL_2Q1R_001, IL_1S72_024, IL_3GLP_002, IL_3NJ6_002, IL_3NJ6_001, IL_3GLP_001, IL_3GLP_004, IL_3FO4_001, IL_1XJR_003, IL_1U6B_005, IL_1ZX7_008, IL_1U6B_001, IL_1ZX7_006, IL_1ZX7_004, IL_1ZX7_002, IL_1T0D_004, IL_2QBG_034, IL_2QBG_030, IL_2ZJR_079, IL_2AW7_064	IL_4A1B_112, IL_4A1B_115, IL_3U5F_041, IL_4A1B_052, IL_3U5F_043, IL_3UXR_080, IL_3U5H_109, IL_2ZJR_063, IL_1YZ9_001, IL_1YZ9_002, IL_4A1B_048, IL_4A1B_041, IL_3U5H_076, IL_3U5F_050, IL_3MEI_002, IL_3U5F_087, IL_3U5H_022, IL_2XZM_081, IL_2QBG_085, IL_3UXR_064, IL_3U5H_008, IL_2XZM_012, IL_3UXR_015, IL_4A1B_071, IL_3UXR_017, IL_3U5H_087, IL_3UXR_081, IL_4A1B_061, IL_3UXR_053, IL_3U5H_017, IL_3UXR_059, IL_2XZM_060, IL_3U5F_034, IL_3U5F_036, IL_2ZJR_053, IL_2XZM_069, IL_4A1C_009, IL_3U5F_084, IL_3TD1_006, IL_3U5H_149, IL_4A1B_013, IL_3TD1_001, IL_3U5F_082, IL_3U5H_028, IL_3U5F_089, IL_2QBG_065, IL_3U5F_002, IL_2ZJR_042, IL_3UXR_034, IL_3U5H_036, IL_2AW7_063, IL_1S72_095, IL_3RW6_004, IL_3U5H_133, IL_3LOA_003, IL_3U5F_015, IL_2ZJR_107, IL_1RPU_001, IL_4A1B_015, IL_4A1B_034, IL_3RG5_002, IL_3RG5_001, IL_3U5H_128, IL_2QEK_002, IL_3U5H_121, IL_3U5F_065, IL_3U5F_063, IL_3U5F_061, IL_3U5H_044, IL_3U5H_049, IL_4A1B_083, IL_3TD0_005, IL_3TD0_006, IL_3TD0_001, IL_4A1B_028, IL_3TD0_002, IL_4A1B_027, IL_4A1B_024, IL_3U5H_114, IL_3U5H_116, IL_3U5H_118, IL_4A1B_107, IL_3UXR_095, IL_3U5H_051, IL_3U5F_072, IL_4A1B_104, IL_3RW6_008	IL_3O58_048, IL_3O58_086, IL_1S72_085, IL_3O30_020, IL_3O58_126, IL_3O58_040, IL_3O58_132, IL_3O30_003, IL_3O58_148, IL_3O58_163, IL_3O30_041, IL_3O58_063, IL_3O58_008, IL_3O58_061, IL_3O30_062, IL_3O58_022, IL_3NJ7_003, IL_3G78_008, IL_3O58_145, IL_3PYO_075, IL_3O30_086, IL_2QBG_040, IL_3O30_084, IL_3O30_089, IL_3PYO_016, IL_3PYO_014, IL_3PYO_039, IL_3O30_015, IL_3O58_097, IL_3PYO_033, IL_2ZJR_029, IL_3O30_033, IL_2O3Y_004, IL_3NJ7_001, IL_2O3Y_001, IL_3O58_134, IL_3NJ7_004, IL_3O58_136, IL_3O30_052, IL_2AW7_009, IL_3O58_032, IL_3O58_151, IL_2XZM_006, IL_3O30_091, IL_3A3A_001, IL_3PYO_085, IL_3NJ7_006, IL_3O58_009, IL_2XZM_082
IL_42829.1 Compare	IL_1YZ9_001, IL_2QBG_085, IL_3MEI_002, IL_2ZJR_107, IL_2ZJR_042, IL_1YZ9_002, IL_2AW7_063, IL_1S72_095, IL_2XZM_069, IL_1RPU_001, IL_2XZM_012, IL_2ZJR_053, IL_2XZM_081, IL_2XZM_060	IL_2ZJR_019, IL_3KTW_002, IL_2ZJR_013, IL_2ZJR_010, IL_2AW7_052, IL_1NLC_002, IL_2O3X_004, IL_1NLC_001, IL_4A1B_115, IL_3U5F_041, IL_4A1B_052, IL_1O9M_004, IL_3UXR_080, IL_3U5H_109, IL_1S72_047, IL_2QBG_020, IL_2XZM_036, IL_2XZM_037, IL_1Z7F_002, IL_405D_002, IL_405D_001, IL_1ZH5_001, IL_2ZJR_063, IL_2FQN_001, IL_2FQN_004, IL_2QBG_096, IL_1ZX7_008, IL_4A1B_048, IL_2QBG_018, IL_1FJG_058, IL_3GLP_003, IL_1T0E_002, IL_4A1B_041, IL_3U5H_076, IL_1FJG_056, IL_3U5F_050, IL_1Z7F_001, IL_4A1B_112, IL_2XZM_001, IL_4A1B_083, IL_3BNL_004, IL_3BNL_001, IL_3U5F_087, IL_2ZJR_090, IL_2XZM_085, IL_3CUN_002, IL_2XZM_086, IL_1XJR_003, IL_2QBG_083, IL_2ZJR_036, IL_2ZJR_030, IL_3TD0_006, IL_3UXR_064, IL_3U5H_028, IL_2QEK_002, IL_2QEK_001, IL_4A1B_071, IL_3U5F_043, IL_2XZM_015, IL_1ZEV_004, IL_1ZEV_005, IL_1ZEV_006, IL_3UXR_017, IL_1ZEV_002, IL_1ZEV_003, IL_1U9S_007, IL_2O3V_004, IL_3TD0_002, IL_2O3V_001, IL_3U5H_087, IL_2XZM_090, IL_3BNQ_006, IL_3UXR_081, IL_1ZX7_004, IL_2ZJR_025, IL_3NJ7_002, IL_1ZX7_002, IL_2Q1R_002, IL_3NJ7_005, IL_4A1B_061, IL_3UXR_053, IL_3BNQ_012, IL_1MFQ_003, IL_3U5H_017, IL_3UXR_059, IL_1KFO_003, IL_1KFO_002, IL_3U5F_034, IL_3U5F_036, IL_5MSF_001, IL_5MSF_002, IL_4A1C_009, IL_2XZM_034, IL_1FJG_062, IL_3U5F_084, IL_3TD1_006, IL_3U5H_149, IL_4A1B_013, IL_3TD1_001, IL_3U5F_082, IL_3U5H_022, IL_2XZM_075, IL_3U5F_089, IL_2XZM_072, IL_3BNQ_007, IL_1MFQ_002, IL_3BNP_001, IL_3D0U_006, IL_3BNP_004, IL_3U5F_002, IL_3BNT_006, IL_3BNT_001, IL_3IVK_004, IL_157D_002, IL_1MWL_004, IL_157D_001, IL_1MWL_001, IL_1T0D_002, IL_3UXR_034, IL_1MZP_001, IL_1T0D_004, IL_3U5H_036, IL_2XZM_043, IL_2AW7_064, IL_3RW6_008, IL_2AW7_062, IL_1FJG_010, IL_3RW6_004, IL_3U5H_133, IL_3DIR_006, IL_2XZM_020, IL_3LOA_003, IL_2ZKO_001, IL_3U5F_015, IL_3RG5_001, IL_2ZJR_100, IL_4A1B_015, IL_3IVK_002, IL_3U5H_008, IL_4A1B_034, IL_3RG5_002, IL_1FJG_006, IL_3U5H_128, IL_2OE5_001, IL_3U5H_121, IL_2XZM_058, IL_3U5F_065, IL_3U5F_063, IL_3U5F_061, IL_2Q1R_001, IL_1FJG_044, IL_3U5H_049, IL_3TD0_001, IL_2QBG_065, IL_3GLP_002, IL_3NJ6_002, IL_3NJ6_001, IL_3GLP_001, IL_3GLP_004, IL_3FO4_001, IL_3TD0_005, IL_1U6B_005, IL_3UXR_015, IL_4A1B_028, IL_1U6B_001, IL_1ZX7_006, IL_4A1B_027, IL_4A1B_024, IL_3BNQ_001, IL_3U5H_114, IL_3U5H_116, IL_3U5H_118, IL_4A1B_107, IL_1UN6_005, IL_3UXR_095, IL_1ZEV_001, IL_3U5H_051, IL_2QBG_034, IL_3U5F_072, IL_2QBG_030, IL_3U5H_044, IL_2ZJR_079, IL_4A1B_104, IL_1S72_024	IL_353D_001, IL_3O30_021, IL_3O30_025, IL_3O58_105, IL_3O58_029, IL_3O30_060, IL_3PYO_041, IL_3O30_069, IL_3O58_026, IL_3O58_146, IL_3O58_144, IL_1O9M_003, IL_3PYO_052, IL_1M5O_003, IL_3O30_036, IL_3O30_030, IL_3O58_059, IL_3PYO_103, IL_3O30_013, IL_3MOJ_002, IL_3O58_073, IL_3O58_019, IL_3O58_037, IL_1SI3_001, IL_3O30_075, IL_1NBS_006
IL_95015.1 Compare	IL_2QEK_002, IL_3LOA_003, IL_2QBG_065, IL_2ZJR_063	IL_2ZJR_019, IL_3KTW_002, IL_2ZJR_013, IL_2ZJR_010, IL_2AW7_052, IL_1NLC_002, IL_2O3X_004, IL_1NLC_001, IL_4A1B_115, IL_3U5F_041, IL_4A1B_052, IL_1O9M_004, IL_3UXR_080, IL_3U5H_109, IL_1S72_047, IL_2QBG_020, IL_2XZM_036, IL_2XZM_037, IL_1Z7F_002, IL_405D_002, IL_405D_001, IL_1ZH5_001, IL_2FQN_001, IL_1YZ9_002, IL_2FQN_004, IL_2QBG_096, IL_1ZX7_008, IL_4A1B_048, IL_2QBG_018, IL_1FJG_058, IL_3GLP_003, IL_1T0E_002, IL_4A1B_041, IL_3U5H_076, IL_1FJG_056, IL_3U5F_050, IL_1Z7F_001, IL_4A1B_112, IL_2XZM_001, IL_4A1B_083, IL_3BNL_004, IL_3MEI_002, IL_3BNL_001, IL_3U5F_087, IL_2ZJR_090, IL_2XZM_085, IL_3CUN_002, IL_2XZM_086, IL_2XZM_081, IL_1XJR_003, IL_2QBG_085, IL_2QBG_083, IL_2ZJR_036, IL_2ZJR_030, IL_3TD0_006, IL_3UXR_064, IL_3U5H_028, IL_2XZM_012, IL_3TD0_001, IL_2QEK_001, IL_4A1B_071, IL_3U5F_043, IL_2XZM_015, IL_1ZEV_004, IL_1ZEV_005, IL_1ZEV_006, IL_3UXR_017, IL_1ZEV_002, IL_1ZEV_003, IL_1U9S_007, IL_2O3V_004, IL_3TD0_002, IL_2O3V_001, IL_3U5H_087, IL_2XZM_090, IL_3BNQ_006, IL_3UXR_081, IL_1ZX7_004, IL_2ZJR_025, IL_3NJ7_002, IL_1ZX7_002, IL_2Q1R_002, IL_3NJ7_005, IL_4A1B_061, IL_2XZM_069, IL_3BNQ_012, IL_1MFQ_003, IL_3U5H_017, IL_3UXR_059, IL_2XZM_060, IL_1KFO_003, IL_1KFO_002, IL_3U5F_034, IL_3U5F_036, IL_5MSF_001, IL_5MSF_002, IL_2ZJR_053, IL_3UXR_053, IL_4A1C_009, IL_2XZM_034, IL_1FJG_062, IL_3U5F_084, IL_3TD1_006, IL_3U5H_149, IL_4A1B_013, IL_3TD1_001, IL_3U5F_082, IL_3U5H_022, IL_2XZM_075, IL_3U5F_089, IL_2XZM_072, IL_3BNQ_007, IL_1MFQ_002, IL_3BNP_001, IL_3D0U_006, IL_3BNP_004, IL_3U5F_002, IL_3BNT_006, IL_3BNT_001, IL_3IVK_004, IL_157D_002, IL_1MWL_004, IL_157D_001, IL_1MWL_001, IL_1T0D_002, IL_3UXR_034, IL_1MZP_001, IL_1T0D_004, IL_3U5H_036, IL_2XZM_043, IL_2AW7_064, IL_3RW6_008, IL_2AW7_062, IL_1FJG_010, IL_3RW6_004, IL_3U5H_133, IL_3DIR_006, IL_2XZM_020, IL_2ZKO_001, IL_3U5F_015, IL_3RG5_001, IL_2ZJR_100, IL_2ZJR_107, IL_1RPU_001, IL_4A1B_015, IL_3IVK_002, IL_1YZ9_001, IL_3U5H_008, IL_4A1B_034, IL_3RG5_002, IL_1FJG_006, IL_3U5H_128, IL_2OE5_001, IL_3U5H_121, IL_2XZM_058, IL_3U5F_065, IL_3U5F_063, IL_2ZJR_042, IL_3U5F_061, IL_2Q1R_001, IL_1FJG_044, IL_3U5H_049, IL_3GLP_002, IL_3NJ6_002, IL_3NJ6_001, IL_3GLP_001, IL_3GLP_004, IL_3FO4_001, IL_3TD0_005, IL_1U6B_005, IL_3UXR_015, IL_4A1B_028, IL_1U6B_001, IL_1ZX7_006, IL_4A1B_027, IL_4A1B_024, IL_3BNQ_001, IL_3U5H_114, IL_3U5H_116, IL_3U5H_118, IL_4A1B_107, IL_1UN6_005, IL_3UXR_095, IL_1ZEV_001, IL_3U5H_051, IL_2QBG_034, IL_3U5F_072, IL_2QBG_030, IL_3U5H_044, IL_2ZJR_079, IL_4A1B_104, IL_1S72_024, IL_2AW7_063, IL_1S72_095	IL_3O30_064, IL_2XZM_064, IL_1S72_062, IL_3O58_095, IL_3O58_082

Children motifs

Child motif	Common motif instances	Only in IL_47174.1	Only in the child motif
IL_47174.2 Compare	IL_2ZJR_019, IL_3KTW_002, IL_2ZJR_013, IL_2ZJR_010, IL_2AW7_052, IL_1NLC_002, IL_1T0E_002, IL_1NLC_001, IL_2XZM_075, IL_4A1B_115, IL_3U5F_041, IL_4A1B_052, IL_1O9M_004, IL_3U5H_109, IL_1S72_047, IL_2XZM_034, IL_2XZM_036, IL_2XZM_037, IL_3U5H_076, IL_405D_002, IL_157D_001, IL_1ZH5_001, IL_2ZJR_063, IL_1YZ9_001, IL_1YZ9_002, IL_2FQN_004, IL_2QBG_096, IL_4A1B_048, IL_2QBG_018, IL_1FJG_058, IL_2O3X_004, IL_4A1B_041, IL_1Z7F_002, IL_1FJG_056, IL_3U5F_050, IL_1Z7F_001, IL_4A1B_112, IL_2XZM_001, IL_3BNL_004, IL_3MEI_002, IL_3BNL_001, IL_3TD1_006, IL_2ZJR_090, IL_2XZM_085, IL_3CUN_002, IL_2XZM_086, IL_2XZM_081, IL_1XJR_003, IL_2QBG_085, IL_2QBG_083, IL_2ZJR_036, IL_2ZJR_030, IL_1U6B_005, IL_3U5H_028, IL_2XZM_012, IL_2QEK_002, IL_2QEK_001, IL_1FJG_044, IL_3U5F_043, IL_2XZM_015, IL_1ZEV_004, IL_1ZEV_005, IL_1ZEV_006, IL_1ZEV_001, IL_1ZEV_002, IL_1ZEV_003, IL_1U9S_007, IL_2O3V_004, IL_1U6B_001, IL_2O3V_001, IL_3U5H_087, IL_2XZM_090, IL_2XZM_072, IL_2ZJR_025, IL_3NJ7_002, IL_2Q1R_002, IL_4A1B_061, IL_2XZM_069, IL_2QBG_020, IL_1MFQ_003, IL_1MFQ_002, IL_2XZM_060, IL_1KFO_003, IL_1KFO_002, IL_3U5F_034, IL_3U5F_036, IL_5MSF_001, IL_2ZJR_053, IL_4A1C_009, IL_2QBG_065, IL_1FJG_062, IL_3U5F_084, IL_3U5F_087, IL_3U5H_022, IL_4A1B_013, IL_3TD1_001, IL_3U5F_082, IL_3BNQ_001, IL_3U5F_089, IL_3BNQ_006, IL_3U5H_017, IL_3BNP_001, IL_3D0U_006, IL_3BNP_004, IL_3U5F_002, IL_3BNT_006, IL_3BNT_001, IL_3IVK_004, IL_157D_002, IL_1MWL_004, IL_405D_001, IL_1MWL_001, IL_1T0D_002, IL_1MZP_001, IL_1UN6_005, IL_3U5H_036, IL_2XZM_043, IL_2XZM_020, IL_2AW7_063, IL_1S72_095, IL_1FJG_010, IL_3RW6_004, IL_3U5H_133, IL_3DIR_006, IL_3LOA_003, IL_2ZKO_001, IL_3U5F_015, IL_1FJG_006, IL_2ZJR_100, IL_2ZJR_107, IL_1RPU_001, IL_4A1B_015, IL_2FQN_001, IL_3U5H_008, IL_4A1B_034, IL_3RG5_001, IL_3U5H_128, IL_2OE5_001, IL_3U5H_149, IL_3U5H_121, IL_2XZM_058, IL_3U5F_065, IL_3U5F_063, IL_2ZJR_042, IL_3U5F_061, IL_2Q1R_001, IL_4A1B_071, IL_3U5H_049, IL_3GLP_002, IL_3NJ6_002, IL_3NJ6_001, IL_3GLP_001, IL_4A1B_083, IL_3TD0_005, IL_3TD0_006, IL_3TD0_001, IL_1ZX7_008, IL_3TD0_002, IL_4A1B_027, IL_4A1B_024, IL_1ZX7_002, IL_3U5H_114, IL_3U5H_116, IL_3U5H_118, IL_4A1B_107, IL_3U5H_051, IL_2QBG_034, IL_4A1B_028, IL_3U5F_072, IL_2QBG_030, IL_3U5H_044, IL_2ZJR_079, IL_4A1B_104, IL_2AW7_064, IL_3FO4_001, IL_1S72_024, IL_2AW7_062	IL_3BNQ_007, IL_3UXR_015, IL_3UXR_017, IL_3RG5_002, IL_1ZX7_006, IL_3UXR_095, IL_1ZX7_004, IL_3UXR_034, IL_3NJ7_005, IL_3IVK_002, IL_1T0D_004, IL_3UXR_064, IL_3GLP_004, IL_3UXR_053, IL_3GLP_003, IL_3BNQ_012, IL_5MSF_002, IL_3UXR_059, IL_3RW6_008, IL_3UXR_080, IL_3UXR_081	IL_3V2F_081, IL_3V2F_080, IL_3V2F_064, IL_1O9M_003, IL_3U4M_001, IL_3SZX_001, IL_3SZX_002, IL_3SZX_003, IL_3V2F_094, IL_3V2F_034, IL_3V2F_053, IL_3V2F_015, IL_3V2F_017, IL_3SYW_002, IL_3SYW_003, IL_3SYW_001, IL_4E48_005, IL_4E48_004, IL_4E48_006, IL_4E48_001, IL_4E48_003, IL_4E48_002, IL_4AOB_005

Annotations: (147)
Isolated non-canonical cWW pair (36)
Isolated non-canonical cWW pair (H) (10)
Isolated non-canonical cWW with bulges (H) (2)
Intercalated tWH (H) (1)
Isolated non-canonical cWW with bulges (1)
Decoding loop with one bulged A (1)
Basepair signature: 06_cWW-cWW-cWW
Heat map statistics: Min 0.00 | Avg 0.46 | Max 1.24

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loadScript https://rna.bgsu.edu/rna3dhub//js/jsmol/j2s//core/package.js

loadScript https://rna.bgsu.edu/rna3dhub//js/jsmol/j2s//core/corejmol.z.js

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Jmol Version: 14.4.4_2016.04.25 2016-04-26 17:41

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view

reading 1233 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

3 models in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

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1233 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Jmol 14.4.4_2016.04.25 2016-04-26 17:41 DSSP analysis for model 1.2 - view

Time for creating model: 58 ms

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3 models

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0 atoms selected

125 atoms selected

22 atoms selected

40 atoms selected

23 atoms selected

40 atoms selected

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924 atoms selected

100 atoms selected

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83 atoms selected

0 atoms selected

23 atoms selected

60 atoms selected

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83 atoms selected

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Done

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Coloring options: Nucleotide numbers

Motif IL_47174.1 Version IL_47174.1 of this group appears in releases 0.6 to 0.6 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_47174.1 Version IL_47174.1 of this group appears in releases 0.6 to 0.6

Download

Csv

Json