RNA 3D Hub //

Motif IL_90629.2 Version IL_90629.2 of this group appears in releases 0.4 to 0.4

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3break 4 5 61-51-62-53-4
1 IL_5MSF_0015MSF0.93621Isolated non-canonical cWW pairRRNA (18-mer)C13||||P_1A14||||P_1C15||||P_1*G3||||P_1G4||||P_1G6||||P_1cWWcWWcWW
2 IL_3HL2_0023HL20.62030ESelenocysteine transfer RNAC65||AU66||AU67||A|A*A5||A|CU6||AG7||AncWWcWWcWwcWW
3 IL_3NJ7_0033NJ70.64210Isolated near basepairC+DRNA (10-mer)C3A4G5*C6A7G8cWWcWW
4 IL_3NJ7_0063NJ70.67140F+ERNA (10-mer)C3A4G5*C6A7G8cWWcWW
5 IL_3F1H_0333F1H0.40500A23S RRNAU963C964C965*G952A953G954cWWcWWcWW
6 IL_3NJ7_0043NJ70.64550Isolated near basepairD+CRNA (10-mer)C3A4G5*C6A7G8cWWcWW
7 IL_3F1H_0163F1H0.39800A23S RRNAC806U807G808*C672C673G674cWWcWWcWW
8 IL_3BNT_0013BNT0.35140Isolated non-canonical cWW pairAA site of human mitochondrial ribosomeG18||||4_665U19||||4_665C20||||4_665*G4U5C6cWWcWwcWW
9 IL_3CUN_0023CUN0.36000CRNA (92-MER)C87A88G89*U57G58G59cWWcWWncWW
10 IL_3BNP_0043BNP0.33920A+BA site of human mitochondrial ribosome, A chain + A site of human mitochondrial ribosome, B chainG18U19C20*G3U4C5cWWcWwcWW
11 IL_2ZJR_0422ZJR0.31300Isolated non-canonical cWW pair (H)X LSU rRNAC1252C1253G1254*C1218C1219G1220cWWncBWcWW
12 IL_2ZJR_0102ZJR0.29460X LSU rRNAA584U585G586*C573C574U575cWWcWWcWW
13 IL_1Z7F_0021Z7F0.25120Isolated non-canonical cWW pairARNA (16-mer)A10A11U12*A5||||6_765C6||||6_765U7||||6_765cWWcWWcWW
14 IL_1MZP_0011MZP0.20840Isolated non-canonical cWW pairBfragment of 23S rRNAC50U51U52*A4U5G6cWWcWwcWW
15 IL_1FJG_0561FJG0.16440A SSU rRNAG1405U1406C1407*G1494U1495C1496cWWncWwcWW
16 IL_1MWL_0041MWL0.19890B+ARNA (22-mer)G26U27C28*G18||AU19C20cWWncWwcWW
17 IL_1FJG_0581FJG0.16510Isolated non-canonical cWW pair (H)A SSU rRNAC1412A1413U1414*G1486G1487G1488cWWcWWcWW
18 IL_1FJG_0441FJG0.12440A SSU rRNAG1193U1194C1195*G1061U1062C1063cWWcWwcWW
19 IL_157D_001157D0.00000A+BRNA (12-mer)C3G4A5*U20A21G22cWWcWWcWW
20 IL_1FJG_0061FJG0.08450Isolated non-canonical cWW pair (H)A SSU rRNAC67G68G69*C99A101G102cWWcWWcWW
21 IL_157D_002157D0.08450B+ARNA (12-mer)C15G16A17*U8A9G10cWWcWWcWW
22 IL_1FJG_0101FJG0.08740Isolated non-canonical cWW pair (H)A SSU rRNAC186C187C188*G190|||KU190|||LG191cWWcWWcWW
23 IL_1KFO_0031KFO0.17650Isolated non-canonical cWW pairARNA (19-mer)G11A12G13*C6||||8_555C7||||8_555U8||||8_555cWWcWWcWW
24 IL_1FJG_0621FJG0.16860A SSU rRNAG1464C1465C1466*G1435U1436C1437cWWcWWcWW
25 IL_1KFO_0021KFO0.17340Isolated non-canonical cWW pairARNA (19-mer)G11||||8_555A12||||8_555G13||||8_555*C6C7U8cWWcWWcWW
26 IL_1S72_0241S720.22770Isolated non-canonical cWW pair (H)0 LSU rRNAC899U900G901*C763C764G765cWWcWWcWW
27 IL_1S72_0471S720.227700 LSU rRNAC1303U1304C1305*G1349U1350G1351cWWcWwcWW
28 IL_1ZEV_0021ZEV0.25360A+BRNA (18-mer)C4||AU5||AG6||A*C13||AU14||AG15||AcWWcWW
29 IL_1O9M_0031O9M0.22491A+BEUBACTERIAL A-SITEG1491A1493G1494*C1407A1408C1409cWWcWW
30 IL_1T0D_0021T0D0.23570B+ARNA (16-mer)G24U25C26*G10U11C12cWWcWwcWW
31 IL_2ZJR_0132ZJR0.29490X LSU rRNAC819U820A821*U685C686G687cWWcWWcWW
32 IL_3F1H_0943F1H0.52852A23S RRNAC2510U2511C2512*G2574C2575G2578cWWncWWcWW
33 IL_3GLP_0023GLP0.56260A+BRNA (8-mer)C5U6G7*C2||AU3||AG4ncWwcWW
34 IL_3E5C_0013E5C0.39093Isolated non-canonical cWW pairASMK box (SAM-III) RiboswitchG12A13U14*A27G28C32cWWcWWcWW
35 IL_1ZEV_0031ZEV0.25520B+ARNA (18-mer)C10||AU11||AG12||A*C7||AU8||AG9||AcWWncwWcWW
36 IL_1S72_0851S720.23452Isolated non-canonical cWW pair (H)0 LSU rRNAU2545U2546C2547*G2609U2610G2613cWWcWwcWW
37 IL_1L9A_0071L9A0.18000Isolated cWH basepairBsignal recognition particle RNA S domainG187G188C189*G210U211C212cWWcWW
38 IL_1NLC_0011NLC0.21521A+BHIV-1 DIS(MAL) genomic RNAG7G9G10*C15A16C17cWWcWWcWW
39 IL_1ZEV_0011ZEV0.25200A+BRNA (18-mer)C1||AU2||AG3||A*C16||AU17||AG18||AncWWcWWcWwcWW
40 IL_1U9S_0071U9S0.24560Isolated non-canonical cWW pairARIBONUCLEASE PC191A192C193*G177C178G179cWWcWWcWW
41 IL_1ZEV_0051ZEV0.25690B+ARNA (18-mer)C4||AU5||AG6||A*C13||AU14||AG15||AcWWncWwcWW
42 IL_1RPU_0011RPU0.22690Isolated non-canonical cWW pairD+CRNA (21-mer)U9||AC10||AA11||A*U9||AC10||AA11||AcWWncBWcWW
43 IL_1XJR_0031XJR0.24661Isolated non-canonical cWW pairAs2m RNAC16A17C18*G32G34G35cWWcWWcWW
44 IL_2ZKO_0012ZKO0.33050Isolated non-canonical cWW pairC+DRNA (21-mer)U9U10A11*U9U10A11cWWcWW
45 IL_3DIR_0063DIR0.38560ARNA (174-MER)G115G116G117*C137A138C139cWWcWWcWW
46 IL_2ZJR_0292ZJR0.30270Isolated near basepair (H)X LSU rRNAU917A918U919*A883C884A885cWWcWW
47 IL_1NLC_0021NLC0.22491A+BHIV-1 DIS(MAL) genomic RNAC15A16C17*G7||AG9||AG10cWWcWWcWW
48 IL_3BNQ_0063BNQ0.34770B+AA site of human mitochondrial ribosome, A chainG5U6C7*G19U20C21cWWcWwcWW
49 IL_2O3Y_0012O3Y0.28370Isolated non-canonical cWW pairB+ARNA (23-mer)G42U43C44*G5U6C7cWWcWwcWW
50 IL_1Z7F_0011Z7F0.25120Isolated non-canonical cWW pairARNA (16-mer)A10||||6_765A11||||6_765U12||||6_765*A5C6U7cWWcWWcWW
51 IL_1ZX7_0021ZX70.26370B+ARNA (14-mer)G24U25C26*G10U11C12cWWcWwcWW
52 IL_1ZEV_0061ZEV0.25730A+BRNA (18-mer)C16||AU17||AG18||A*C1||AU2||AG3||AcWWncWwcWW
53 IL_1MWL_0011MWL0.19200A+BRNA (22-mer)G4U5C6*G40U41C42cWWncWwcWW
54 IL_1S72_0951S720.23521Isolated non-canonical cWW with bulges (H)0 LSU rRNAG2855A2856C2857*G2900C2901C2903cWWncWWcWW
55 IL_1ZH5_0011ZH50.25930Isolated non-canonical cWW pairD+CRNA (9-mer)C3U4G5*C3U4G5cWWncWwcWW
56 IL_1ZEV_0041ZEV0.25540A+BRNA (18-mer)C10||AU11||AG12||A*C7||AU8||AG9||AcWWncWwcWW
57 IL_3F1H_0243F1H0.39861A23S RRNAG931A933G934*C844G845C846cWWcWW
58 IL_3F1H_0433F1H0.47181A23S RRNAC1196G1197U1198*A1247U1249G1250cWWcWScWW
59 IL_3F1H_0143F1H0.39170A23S RRNAC564C565U566*A575U576G577cWWcWWcWW
60 IL_3BNT_0063BNT0.35970Isolated non-canonical cWW pairAA site of human mitochondrial ribosomeG18U19C20*G4||||4_665U5||||4_665C6||||4_665cWWcWwcWW
61 IL_2ZJR_0902ZJR0.32082Isolated non-canonical cWW with bulges (H)X LSU rRNAC2489U2490C2491*G2553C2554G2557cWWncWWcWW
62 IL_2ZJR_0792ZJR0.32070X LSU rRNAU2211U2212G2213*C2068U2069G2070ncWWcWwcWW
63 IL_3BNL_0013BNL0.33380B+AA site of bacterial ribosomeG18U19C20*G4U5C6cWWcWwcWW
64 IL_2ZJR_1072ZJR0.32600Isolated non-canonical cWW pair (H)Y 5S rRNAU82C83G84*C97C98G99cWWcBWcWW
65 IL_3D0U_0063D0U0.37160Isolated non-canonical cWW pairALysine Riboswitch RNAC134A135C136*G112G113G114cWWcWWcWW
66 IL_3BNL_0043BNL0.33530A+BA site of bacterial ribosomeG18U19C20*G4U5C6cWWcWwcWW
67 IL_3BNQ_0073BNQ0.34980D+CA site of human mitochondrial ribosome, B chainG17U18C19*G5U6C7cWWcWwcWW
68 IL_3BNQ_0123BNQ0.34990D+CA site of human mitochondrial ribosome, B chainG3U4C5*G19U20C21cWWcWwcWW
69 IL_3F1H_0393F1H0.41861A23S RRNAC1121G1122C1123*G1031A1032G1034cWWncWWcWW
70 IL_3BNL_0023BNL0.33451B+AA site of bacterial ribosomeG15A17G18*C6A7C8cWWcWwcWW
71 IL_2ZI0_0012ZI00.29270Isolated near basepairC+DRNA (21-mer)U9U10A11*U9U10A11cWWcWW
72 IL_2O3V_0012O3V0.27650Isolated non-canonical cWW pairB+ARNA (23-mer)G42U43C44*G5U6C7cWWcWwcWW
73 IL_1YZ9_0011YZ90.24760Isolated non-canonical cWW pairD+CRNA (11-mer)A15C16U17*A4C5U6cWWncBWcWW
74 IL_2O3X_0042O3X0.28100Isolated non-canonical cWW pairA+BRNA (23-mer)G19U20C21*G28U29C30cWWcWwcWW
75 IL_1ZX7_0041ZX70.26510Isolated non-canonical cWW pairD+CRNA (14-mer)G24U25C26*G10U11C12cWWcWwcWW
76 IL_2FQN_0012FQN0.27310B+ARNA (23-mer)G42U43C44*G5U6C7cWWcWwcWW
77 IL_2Q1R_0022Q1R0.28890ARNA (12-mer)C1003||||2_755G1004||||2_755A1005||||2_755*U1008A1009G1010cWWcWWcWW
78 IL_2Q1R_0012Q1R0.28710ARNA (12-mer)C1003G1004A1005*U1008||||2_755A1009||||2_755G1010||||2_755cWWcWWcWW
79 IL_2QEK_0012QEK0.29261B+AHIV-1 subtype F DIS genomic RNAC15A16C17*G7A8G10cWWcWwcWW
80 IL_2ZJR_0252ZJR0.30140Isolated non-canonical cWW pair (H)X LSU rRNAC864A865U866*A936C937G938cWWcWWcWW
81 IL_2ZJR_0362ZJR0.31201Isolated non-canonical cWW pair (H)X LSU rRNAC1132G1133C1134*G1042A1043G1045cWWcWWcWW
82 IL_3BNQ_0013BNQ0.34150B+AA site of human mitochondrial ribosome, A chainG19U20C21*G5U6C7cWWncWwcWW
83 IL_3BNP_0013BNP0.33760B+AA site of human mitochondrial ribosome, B chainG17U18C19*G4U5C6cWWcWwcWW
84 IL_2O3V_0042O3V0.27970Isolated non-canonical cWW pairA+BRNA (23-mer)G19U20C21*G28U29C30cWWcWwcWW
85 IL_1T0E_0021T0E0.24440Isolated non-canonical cWW pairC+ARNA (17-mer)G14U15C16*G10||AU11C12cWWcWwcWW
86 IL_1T0D_0041T0D0.24200D+CRNA (16-mer)G24U25C26*G10U11C12cWWcWwcWW
87 IL_2ZJR_0192ZJR0.30080X LSU rRNAG767U768C769*G754C755C756cWWcWWcWW
88 IL_1YZ9_0021YZ90.25110Isolated non-canonical cWW pairE+FRNA (11-mer)A4C5U6*A15C16U17cWWncBWcWW
89 IL_1O9M_0041O9M0.22590A+BEUBACTERIAL A-SITEG1494U1495C1496*G1405U1406C1407cWWcWwcWW
90 IL_2FQN_0042FQN0.27600A+BRNA (23-mer)G19U20C21*G28U29C30cWWcWwcWW
91 IL_2OE5_0012OE50.28400Isolated non-canonical cWW pairA+BRNA (16-mer) + RNA (17-mer)G1405U1406C1407*G1494U1495C1496cWWcWwcWW
92 IL_2O3Y_0042O3Y0.28400Isolated non-canonical cWW pairA+BRNA (23-mer)G19U20C21*G28U29C30cWWcWwcWW
93 IL_1ZX7_0061ZX70.26870Isolated non-canonical cWW pairF+ERNA (14-mer)G24U25C26*G10U11C12cWWcWwcWW
94 IL_1ZX7_0081ZX70.26970H+GRNA (14-mer)G24U25C26*G10U11C12cWWcWwcWW
95 IL_2ZJR_0532ZJR0.31831X LSU rRNAU1447A1448C1449*G1573A1574G1576cWWncwWcWW
96 IL_2ZJR_0302ZJR0.30320Isolated non-canonical cWW pair (H)X LSU rRNAU974C975C976*G963A964G965cWWcWWcWW
97 IL_2ZJR_1002ZJR0.32511X LSU rRNAG2813G2814C2815*G2852U2853C2855cWWcWWcWW
98 IL_3NJ7_0023NJ70.64050B+ARNA (10-mer)C3A4G5*C6A7G8cWWcWW
99 IL_3F1H_0813F1H0.51640A23S RRNAC2179U2180G2181*C2108U2109G2110cWWncWwcWW
100 IL_3HHN_0043HHN0.61840Isolated non-canonical cWW pairEClass I ligase ribozyme, self-ligation productA102A103C104*G87G88U89cWWcWWcWW
101 IL_3NJ7_0053NJ70.65360E+FRNA (10-mer)C3A4G5*C6A7G8cWWcWW
102 IL_405D_001405D0.76190B+ARNA (16-mer)A26A27U28*A5C6U7cWWcWWcWW
103 IL_5MSF_0025MSF0.99521SRNA (18-mer)C13||||P_1A14||||P_1C15||||P_1*G3||||P_1G4||||P_1G6||||P_1cWWcWWcWW
104 IL_3F1H_0803F1H0.51510A23S RRNAU2232U2233G2234*C2085U2086G2087cWWcWwcWW
105 IL_3GLP_0033GLP0.58100D+CRNA (8-mer)C5U6G7*C2U3G4cWW
106 IL_3NJ7_0013NJ70.62820A+BRNA (10-mer)C3A4G5*C6A7G8cWWcWW
107 IL_3GLP_0013GLP0.54290A+BRNA (8-mer)C2U3G4*C5||AU6G7cWWcWW
108 IL_3GLP_0043GLP0.61500D+CRNA (8-mer)C2U3G4*C5U6||AG7cWW
109 IL_3F1H_0853F1H0.51932A23S RRNAC2297A2298G2299*C2317G2318G2321cWWntHScWW
110 IL_3F1H_0543F1H0.50961A23S RRNAU1433A1434G1435*C1557A1558G1560cWWcWW
111 IL_3F1H_1133F1H0.52990B5S RRNAU80G81G82*C94U95G96cWWcWW
112 IL_3FO4_0013FO40.52990AGuanine riboswitch C74U mutantU25C26G27*C43A44A45cWWcWWacWW
113 IL_3HHN_0023HHN0.61770CClass I ligase ribozyme, self-ligation productG87G88U89*A102A103C104cWWncWWcWW
114 IL_3NJ6_0013NJ60.62460ARNA (10-mer)C3A4G5*C6||||6_555A7||||6_555G8||||6_555cWWcWW
115 IL_3NJ6_0023NJ60.62810ARNA (10-mer)C3||||6_555A4||||6_555G5||||6_555*C6A7G8cWWcWW
116 IL_3MEI_0023MEI0.62040Isolated non-canonical cWW pairA+BRNA (23-mer)G8C9C10*G13C14C15cWWncBWcWW
117 IL_405D_002405D0.78320A+BRNA (16-mer)A10A11U12*A21C22U23cWWcWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
GUC*GUC30
CUG*CUG12
CAG*CAG8
AAU*ACU4
CGA*UAG4
CAC*GGAG2
CUU*AUG2
UCC*GAG2
CUG*CCG2
GAG*CCU2
GAAG*CAC2
CUC*GCGAG2
CAC*GAGG2
UUA*UUA2
UUG*CUG2
CGC*GAUG2
ACU*ACU2
CAG*UGG1
CCG*CCG1
AUG*CCU1
CAU*GGG1
CGG*CAG1
CCC*GUG1
GCC*GUC1
CUC*GUG1
CUA*UCG1
GAU*AGAUGC1
UUC*GUGAG1
GGC*GUC1
GAGG*CAC1
CAC*GCG1
UCA*UCA1
GGG*CAC1
UAU*ACA1
GAC*GCAC1
GGAG*CGC1
CGU*AGUG1
CCU*AUG1
UCG*CCG1
CAC*GGG1
CAC*GAAG1
CAU*ACG1
GUC*GCC1
UAC*GACG1
GGC*GUGC1
AAC*GGU1
CAG*CGGAG1
UAG*CAGG1
UGG*CUG1
UCG*CAA1
GGU*AAC1
GCC*GCC1
Non-Watson-Crick part of the motif
SequenceCounts
U*U49
A*C9
A*A8
G*A7
C*C6
U*C5
A*G4
C*A3
C*U3
A*AG3
A*GA2
AA*A2
U*CGA2
G*U2
G*AU2
A*GAUG1
U*UGA1
AG*A1
A*CA1
GA*G1
G*GU1
A*AA1
A*AC1
G*UG1
A*GGA1

Release history

Release0.4
Date2011-12-08
StatusUpdated, 1 parent

Parent motifs

Parent motifCommon motif instancesOnly in IL_90629.2Only in the parent motif
IL_90629.1
Compare		IL_2ZJR_019, IL_2ZJR_013, IL_2ZJR_010, IL_1NLC_002, IL_2O3X_004, IL_1NLC_001, IL_1O9M_004, IL_1O9M_003, IL_1S72_047, IL_157D_002, IL_405D_001, IL_1ZH5_001, IL_2FQN_001, IL_1YZ9_002, IL_2FQN_004, IL_2O3Y_004, IL_2O3Y_001, IL_1FJG_058, IL_3GLP_003, IL_1T0E_002, IL_1Z7F_002, IL_1FJG_056, IL_1Z7F_001, IL_3BNL_004, IL_3BNL_001, IL_3BNL_002, IL_2ZJR_090, IL_3CUN_002, IL_3F1H_085, IL_3F1H_080, IL_3F1H_081, IL_2ZJR_036, IL_2ZJR_030, IL_2QEK_001, IL_1FJG_044, IL_1ZEV_004, IL_1ZEV_005, IL_1ZEV_006, IL_1ZEV_001, IL_1ZEV_002, IL_1ZEV_003, IL_3F1H_016, IL_2O3V_004, IL_3F1H_014, IL_2O3V_001, IL_2ZJR_029, IL_2ZJR_025, IL_3NJ7_002, IL_3NJ7_003, IL_3NJ7_001, IL_3NJ7_006, IL_3NJ7_004, IL_3NJ7_005, IL_3BNQ_012, IL_1KFO_003, IL_1KFO_002, IL_3BNP_001, IL_5MSF_001, IL_5MSF_002, IL_2ZJR_053, IL_1U9S_007, IL_1FJG_062, IL_1S72_085, IL_3BNQ_001, IL_3BNQ_006, IL_3BNQ_007, IL_3F1H_033, IL_2ZI0_001, IL_3F1H_039, IL_3D0U_006, IL_3BNP_004, IL_3BNT_006, IL_3BNT_001, IL_405D_002, IL_1MWL_004, IL_157D_001, IL_1MWL_001, IL_1T0D_002, IL_1MZP_001, IL_1T0D_004, IL_1S72_095, IL_1FJG_010, IL_3DIR_006, IL_3F1H_024, IL_2ZKO_001, IL_2ZJR_100, IL_2ZJR_107, IL_1RPU_001, IL_1YZ9_001, IL_1FJG_006, IL_3F1H_094, IL_2OE5_001, IL_3E5C_001, IL_2Q1R_002, IL_2ZJR_042, IL_2Q1R_001, IL_3F1H_113, IL_1L9A_007, IL_3F1H_054, IL_3GLP_002, IL_3NJ6_002, IL_3NJ6_001, IL_3GLP_001, IL_3GLP_004, IL_3FO4_001, IL_1XJR_003, IL_1ZX7_008, IL_1ZX7_006, IL_1ZX7_004, IL_1ZX7_002, IL_3HL2_002, IL_3MEI_002, IL_2ZJR_079, IL_3F1H_043, IL_1S72_024, IL_3HHN_004, IL_3HHN_002IL_3F1H_062, IL_3LOA_003

Children motifs

Child motifCommon motif instancesOnly in IL_90629.2Only in the child motif
IL_24421.1
Compare		IL_2ZJR_019, IL_2ZJR_013, IL_2ZJR_010, IL_1NLC_002, IL_2O3X_004, IL_1NLC_001, IL_1O9M_004, IL_1S72_047, IL_157D_002, IL_405D_001, IL_1ZH5_001, IL_2FQN_001, IL_2FQN_004, IL_2O3Y_004, IL_2O3Y_001, IL_1FJG_058, IL_3NJ6_002, IL_1T0E_002, IL_1Z7F_002, IL_1FJG_056, IL_1Z7F_001, IL_3BNL_004, IL_3BNL_001, IL_2ZJR_090, IL_3CUN_002, IL_2ZJR_036, IL_2ZJR_030, IL_2QEK_001, IL_1FJG_044, IL_1ZEV_004, IL_1ZEV_005, IL_1ZEV_006, IL_1ZEV_001, IL_1ZEV_002, IL_1ZEV_003, IL_1U9S_007, IL_2O3V_004, IL_2O3V_001, IL_2ZJR_029, IL_2ZJR_025, IL_3NJ7_002, IL_3NJ7_003, IL_3NJ7_001, IL_3NJ7_006, IL_3NJ7_004, IL_3NJ7_005, IL_3BNQ_012, IL_1KFO_003, IL_1KFO_002, IL_5MSF_001, IL_5MSF_002, IL_1FJG_062, IL_1S72_085, IL_3BNQ_001, IL_3BNQ_006, IL_3BNQ_007, IL_3BNP_001, IL_3D0U_006, IL_3BNP_004, IL_3BNT_006, IL_3BNT_001, IL_405D_002, IL_1MWL_004, IL_157D_001, IL_1MWL_001, IL_1T0D_002, IL_1MZP_001, IL_1T0D_004, IL_1FJG_010, IL_3DIR_006, IL_2ZKO_001, IL_2ZJR_100, IL_1FJG_006, IL_2OE5_001, IL_2Q1R_002, IL_2Q1R_001, IL_1S72_024, IL_3GLP_002, IL_3GLP_003, IL_3NJ6_001, IL_3GLP_001, IL_3GLP_004, IL_3FO4_001, IL_1XJR_003, IL_1ZX7_008, IL_1ZX7_006, IL_1ZX7_004, IL_1ZX7_002, IL_2ZJR_079IL_3F1H_085, IL_3F1H_080, IL_3F1H_081, IL_3F1H_094, IL_2ZJR_053, IL_1O9M_003, IL_3E5C_001, IL_3F1H_033, IL_3MEI_002, IL_2ZI0_001, IL_3F1H_039, IL_3F1H_016, IL_1L9A_007, IL_3F1H_014, IL_3F1H_054, IL_1YZ9_001, IL_1YZ9_002, IL_2ZJR_042, IL_3HL2_002, IL_1S72_095, IL_3F1H_024, IL_3BNL_002, IL_3F1H_043, IL_2ZJR_107, IL_3F1H_113, IL_1RPU_001, IL_3HHN_004, IL_3HHN_002IL_3O58_048, IL_3O58_136, IL_3O58_086, IL_2QBG_083, IL_3KTW_002, IL_3O30_020, IL_3O58_040, IL_3O30_003, IL_3O58_022, IL_2AW7_052, IL_3O58_148, IL_3O58_163, IL_3O30_041, IL_3O58_063, IL_3O58_008, IL_3O58_061, IL_3O30_062, IL_2XZM_075, IL_3G78_008, IL_3O58_145, IL_2XZM_072, IL_2XZM_015, IL_3O30_086, IL_2QBG_040, IL_3O30_084, IL_2XZM_034, IL_2XZM_036, IL_2XZM_037, IL_1U6B_001, IL_3PYO_014, IL_3O30_089, IL_3PYO_016, IL_3IVK_002, IL_2XZM_090, IL_3PYO_039, IL_3IVK_004, IL_3O58_032, IL_3O58_097, IL_3PYO_033, IL_3O58_126, IL_1U6B_005, IL_3O30_033, IL_2XZM_058, IL_2QBG_096, IL_3O30_015, IL_3O58_132, IL_3O58_134, IL_1UN6_005, IL_2QBG_018, IL_2XZM_043, IL_2QBG_034, IL_2AW7_009, IL_2AW7_062, IL_3PYO_075, IL_2QBG_020, IL_1MFQ_003, IL_1MFQ_002, IL_2XZM_020, IL_3O58_151, IL_2XZM_006, IL_2XZM_001, IL_3O30_091, IL_2QBG_030, IL_3A3A_001, IL_3O30_052, IL_3PYO_085, IL_2AW7_064, IL_2XZM_085, IL_3O58_009, IL_2XZM_086, IL_2XZM_082
IL_42829.1
Compare		IL_1YZ9_001, IL_1YZ9_002, IL_3MEI_002, IL_2ZJR_042, IL_1S72_095, IL_2ZJR_107, IL_1RPU_001, IL_2ZJR_053, IL_1O9M_003IL_2ZJR_019, IL_2ZJR_013, IL_2ZJR_010, IL_1NLC_002, IL_2O3X_004, IL_1NLC_001, IL_1O9M_004, IL_1S72_047, IL_157D_002, IL_405D_001, IL_1ZH5_001, IL_2FQN_001, IL_3F1H_094, IL_2FQN_004, IL_2O3Y_004, IL_2O3Y_001, IL_1FJG_058, IL_3GLP_003, IL_1T0E_002, IL_1Z7F_002, IL_1FJG_056, IL_1Z7F_001, IL_3BNL_004, IL_3BNL_001, IL_3BNL_002, IL_2ZJR_090, IL_3CUN_002, IL_3F1H_085, IL_3F1H_080, IL_3F1H_081, IL_2ZJR_036, IL_2ZJR_030, IL_2QEK_001, IL_1FJG_044, IL_1ZEV_004, IL_1ZEV_005, IL_1ZEV_006, IL_1ZEV_001, IL_1ZEV_002, IL_1ZEV_003, IL_3F1H_016, IL_2O3V_004, IL_3F1H_014, IL_2O3V_001, IL_2ZJR_029, IL_2ZJR_025, IL_3NJ7_002, IL_3NJ7_003, IL_3NJ7_001, IL_3NJ7_006, IL_3NJ7_004, IL_3NJ7_005, IL_3BNQ_012, IL_1KFO_003, IL_1KFO_002, IL_3BNP_001, IL_5MSF_001, IL_5MSF_002, IL_1U9S_007, IL_1FJG_062, IL_1S72_085, IL_3BNQ_001, IL_3BNQ_006, IL_3BNQ_007, IL_3F1H_033, IL_2ZI0_001, IL_3F1H_039, IL_3D0U_006, IL_3BNP_004, IL_3BNT_006, IL_3BNT_001, IL_405D_002, IL_1MWL_004, IL_157D_001, IL_1MWL_001, IL_1T0D_002, IL_1MZP_001, IL_1T0D_004, IL_1FJG_010, IL_3DIR_006, IL_3F1H_024, IL_2ZKO_001, IL_2ZJR_100, IL_1FJG_006, IL_2OE5_001, IL_3E5C_001, IL_2Q1R_002, IL_2Q1R_001, IL_3F1H_113, IL_1L9A_007, IL_3F1H_054, IL_3GLP_002, IL_3NJ6_002, IL_3NJ6_001, IL_3GLP_001, IL_3GLP_004, IL_3FO4_001, IL_1XJR_003, IL_1ZX7_008, IL_1ZX7_006, IL_1ZX7_004, IL_1ZX7_002, IL_3HL2_002, IL_2ZJR_079, IL_3F1H_043, IL_1S72_024, IL_3HHN_004, IL_3HHN_002IL_353D_001, IL_3O30_021, IL_2QBG_085, IL_3O30_025, IL_3O58_105, IL_3O58_029, IL_3O30_060, IL_2XZM_012, IL_3PYO_041, IL_3O30_069, IL_3O58_026, IL_3O58_146, IL_3O58_144, IL_3PYO_052, IL_2XZM_060, IL_1M5O_003, IL_3O30_036, IL_3O30_030, IL_3O58_059, IL_3PYO_103, IL_3O30_013, IL_2AW7_063, IL_3MOJ_002, IL_2XZM_069, IL_3O58_073, IL_3O58_019, IL_3O58_037, IL_1SI3_001, IL_3O30_075, IL_2XZM_081, IL_1NBS_006
IL_05754.1
Compare		IL_3E5C_001IL_2ZJR_019, IL_2ZJR_013, IL_2ZJR_010, IL_1NLC_002, IL_2O3X_004, IL_1NLC_001, IL_1O9M_004, IL_1O9M_003, IL_1S72_047, IL_157D_002, IL_405D_001, IL_1ZH5_001, IL_1YZ9_001, IL_1YZ9_002, IL_2FQN_004, IL_2O3Y_004, IL_2O3Y_001, IL_1FJG_058, IL_3GLP_003, IL_1T0E_002, IL_1Z7F_002, IL_1FJG_056, IL_1Z7F_001, IL_3BNL_004, IL_3BNL_001, IL_3BNL_002, IL_2ZJR_090, IL_3CUN_002, IL_3F1H_085, IL_3F1H_080, IL_3F1H_081, IL_2ZJR_036, IL_2ZJR_030, IL_2QEK_001, IL_1FJG_044, IL_1ZEV_004, IL_1ZEV_005, IL_1ZEV_006, IL_1ZEV_001, IL_1ZEV_002, IL_1ZEV_003, IL_3F1H_016, IL_2O3V_004, IL_3F1H_014, IL_2O3V_001, IL_2ZJR_029, IL_2ZJR_025, IL_3NJ7_002, IL_3NJ7_003, IL_3NJ7_001, IL_3NJ7_006, IL_3NJ7_004, IL_3NJ7_005, IL_3BNQ_012, IL_1KFO_003, IL_1KFO_002, IL_3BNP_001, IL_5MSF_001, IL_5MSF_002, IL_2ZJR_053, IL_1U9S_007, IL_1FJG_062, IL_1S72_085, IL_3BNQ_001, IL_3BNQ_006, IL_3BNQ_007, IL_3F1H_033, IL_2ZI0_001, IL_3F1H_039, IL_3D0U_006, IL_3BNP_004, IL_3BNT_006, IL_3BNT_001, IL_405D_002, IL_1MWL_004, IL_157D_001, IL_2ZJR_042, IL_1T0D_002, IL_1MZP_001, IL_1T0D_004, IL_1S72_095, IL_1FJG_010, IL_3DIR_006, IL_3F1H_024, IL_2ZKO_001, IL_2ZJR_100, IL_2ZJR_107, IL_1RPU_001, IL_2FQN_001, IL_1FJG_006, IL_3F1H_094, IL_2OE5_001, IL_2Q1R_002, IL_1MWL_001, IL_2Q1R_001, IL_3F1H_113, IL_1L9A_007, IL_3F1H_054, IL_3GLP_002, IL_3NJ6_002, IL_3NJ6_001, IL_3GLP_001, IL_3GLP_004, IL_3FO4_001, IL_1XJR_003, IL_1ZX7_008, IL_1ZX7_006, IL_1ZX7_004, IL_1ZX7_002, IL_3HL2_002, IL_3MEI_002, IL_2ZJR_079, IL_3F1H_043, IL_1S72_024, IL_3HHN_004, IL_3HHN_002
IL_30092.1
Compare		IL_3BNL_002IL_2ZJR_019, IL_2ZJR_013, IL_2ZJR_010, IL_1NLC_002, IL_2O3X_004, IL_1NLC_001, IL_1O9M_004, IL_1O9M_003, IL_1S72_047, IL_157D_002, IL_405D_001, IL_1ZH5_001, IL_1YZ9_001, IL_1YZ9_002, IL_2FQN_004, IL_2O3Y_004, IL_2O3Y_001, IL_1FJG_058, IL_3GLP_003, IL_1T0E_002, IL_1Z7F_002, IL_1FJG_056, IL_1Z7F_001, IL_3BNL_004, IL_3BNL_001, IL_2ZJR_090, IL_3CUN_002, IL_3F1H_085, IL_3F1H_080, IL_3F1H_081, IL_2ZJR_036, IL_2ZJR_030, IL_2QEK_001, IL_1FJG_044, IL_1ZEV_004, IL_1ZEV_005, IL_1ZEV_006, IL_1ZEV_001, IL_1ZEV_002, IL_1ZEV_003, IL_3F1H_016, IL_2O3V_004, IL_3F1H_014, IL_2O3V_001, IL_2ZJR_029, IL_2ZJR_025, IL_3NJ7_002, IL_3NJ7_003, IL_3NJ7_001, IL_3NJ7_006, IL_3NJ7_004, IL_3NJ7_005, IL_3BNQ_012, IL_1KFO_003, IL_1KFO_002, IL_3BNP_001, IL_5MSF_001, IL_5MSF_002, IL_2ZJR_053, IL_1U9S_007, IL_1FJG_062, IL_1S72_085, IL_3BNQ_001, IL_3BNQ_006, IL_3BNQ_007, IL_3F1H_033, IL_2ZI0_001, IL_3F1H_039, IL_3D0U_006, IL_3BNP_004, IL_3BNT_006, IL_3BNT_001, IL_405D_002, IL_1MWL_004, IL_157D_001, IL_2ZJR_042, IL_1T0D_002, IL_1MZP_001, IL_1T0D_004, IL_1S72_095, IL_1FJG_010, IL_3DIR_006, IL_3F1H_024, IL_2ZKO_001, IL_2ZJR_100, IL_2ZJR_107, IL_1RPU_001, IL_2FQN_001, IL_1FJG_006, IL_3F1H_094, IL_2OE5_001, IL_3E5C_001, IL_2Q1R_002, IL_1MWL_001, IL_2Q1R_001, IL_3F1H_113, IL_1L9A_007, IL_3F1H_054, IL_3GLP_002, IL_3NJ6_002, IL_3NJ6_001, IL_3GLP_001, IL_3GLP_004, IL_3FO4_001, IL_1XJR_003, IL_1ZX7_008, IL_1ZX7_006, IL_1ZX7_004, IL_1ZX7_002, IL_3HL2_002, IL_3MEI_002, IL_2ZJR_079, IL_3F1H_043, IL_1S72_024, IL_3HHN_004, IL_3HHN_002IL_2GDI_005, IL_2GDI_001, IL_3O30_031
IL_46873.1
Compare		IL_2ZI0_001IL_2ZJR_019, IL_2ZJR_013, IL_2ZJR_010, IL_1NLC_002, IL_2O3X_004, IL_1NLC_001, IL_1O9M_004, IL_1O9M_003, IL_1S72_047, IL_157D_002, IL_405D_001, IL_1ZH5_001, IL_1YZ9_001, IL_1YZ9_002, IL_2FQN_004, IL_2O3Y_004, IL_2O3Y_001, IL_1FJG_058, IL_3GLP_003, IL_1T0E_002, IL_1Z7F_002, IL_1FJG_056, IL_1Z7F_001, IL_3BNL_004, IL_3BNL_001, IL_3BNL_002, IL_2ZJR_090, IL_3CUN_002, IL_3F1H_085, IL_3F1H_080, IL_3F1H_081, IL_2ZJR_036, IL_2ZJR_030, IL_2QEK_001, IL_1FJG_044, IL_1ZEV_004, IL_1ZEV_005, IL_1ZEV_006, IL_1ZEV_001, IL_1ZEV_002, IL_1ZEV_003, IL_3F1H_016, IL_2O3V_004, IL_3F1H_014, IL_2O3V_001, IL_2ZJR_029, IL_2ZJR_025, IL_3NJ7_002, IL_3NJ7_003, IL_3NJ7_001, IL_3NJ7_006, IL_3NJ7_004, IL_3NJ7_005, IL_3BNQ_012, IL_1KFO_003, IL_1KFO_002, IL_3BNP_001, IL_5MSF_001, IL_5MSF_002, IL_2ZJR_053, IL_1U9S_007, IL_1FJG_062, IL_1S72_085, IL_3BNQ_001, IL_3BNQ_006, IL_3BNQ_007, IL_3F1H_033, IL_3F1H_039, IL_3D0U_006, IL_3BNP_004, IL_3BNT_006, IL_3BNT_001, IL_405D_002, IL_1MWL_004, IL_157D_001, IL_2ZJR_042, IL_1T0D_002, IL_1MZP_001, IL_1T0D_004, IL_1S72_095, IL_1FJG_010, IL_3DIR_006, IL_3F1H_024, IL_2ZKO_001, IL_2ZJR_100, IL_2ZJR_107, IL_1RPU_001, IL_2FQN_001, IL_1FJG_006, IL_3F1H_094, IL_2OE5_001, IL_3E5C_001, IL_2Q1R_002, IL_1MWL_001, IL_2Q1R_001, IL_3F1H_113, IL_1L9A_007, IL_3F1H_054, IL_3GLP_002, IL_3NJ6_002, IL_3NJ6_001, IL_3GLP_001, IL_3GLP_004, IL_3FO4_001, IL_1XJR_003, IL_1ZX7_008, IL_1ZX7_006, IL_1ZX7_004, IL_1ZX7_002, IL_3HL2_002, IL_3MEI_002, IL_2ZJR_079, IL_3F1H_043, IL_1S72_024, IL_3HHN_004, IL_3HHN_002IL_3PYO_024
Annotations
  • (72)
  • Isolated non-canonical cWW pair (28)
  • Isolated non-canonical cWW pair (H) (10)
  • Isolated near basepair (3)
  • Isolated non-canonical cWW with bulges (H) (2)
  • Isolated cWH basepair (1)
  • Isolated near basepair (H) (1)
    • Basepair signature
    Heat map statistics
    Min 0.00 | Avg 0.45 | Max 1.25
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