Motif IL_45067.4 Version IL_45067.4 of this group appears in releases 3.88 to 3.88
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | break | 8 | 9 | 10 | 11 | 12 | 1-5 | 1-12 | 2-3 | 2-11 | 4-11 | 5-9 | 5-10 | 5-12 | 6-9 | 6-10 | 7-8 | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_6CZR_123 | 6CZR | 0.6053 | 2 | Kink-turn with non-sequential stacking | 1a | SSU rRNA | C | 273 | G | 274 | A | 275 | G | 277 | A | 278 | C | 279 | G | 280 | * | C | 238 | A | 239 | C | 241 | A | 242 | G | 243 | cWW | ntsS | tSH | tHW | cwW | cWW | |||||
2 | IL_4LFB_011 | 4LFB | 0.5878 | 2 | Kink-turn with non-sequential stacking | A | SSU rRNA | C | 277 | G | 278 | A | 279 | G | 281 | A | 282 | C | 283 | G | 284 | * | C | 242 | A | 243 | C | 245 | A | 246 | G | 247 | ncsS | cWW | ntsS | tSH | tHW | cwW | cWW | ||||
3 | IL_5J7L_014 | 5J7L | 0.5930 | 2 | Kink-turn with non-sequential stacking | AA | SSU rRNA | C | 277 | G | 278 | A | 279 | G | 281 | A | 282 | U | 283 | C | 284 | * | G | 242 | A | 243 | U | 245 | A | 246 | G | 247 | ncsS | cWW | ncSH | tSH | tHW | cWw | cWW | ||||
4 | IL_8C3A_410 | 8C3A | 0.5740 | 2 | Kink-turn with non-sequential stacking (H) | CM | SSU rRNA | U | 346 | U | 347 | U | 348 | A | 350 | A | 351 | C | 352 | G | 353 | * | U | 309 | A | 310 | C | 312 | A | 313 | A | 314 | ncsS | cWW | tsS | ntSH | tHW | cwW | cWW | ||||
5 | IL_4V88_402 | 4V88 | 0.5677 | 2 | Kink-turn with non-sequential stacking | A6 | SSU rRNA | U | 348 | U | 349 | U | 350 | A | 352 | A | 353 | C | 354 | G | 355 | * | U | 311 | A | 312 | C | 314 | A | 315 | A | 316 | ncsS | cWW | tsS | ntSH | tHW | cwW | cWW | ||||
6 | IL_3RW6_002 | 3RW6 | 0.5985 | 4 | Kink-turn with non-sequential stacking | H | constitutive transport element(CTE)of Mason-Pfizer monkey virus RNA | C | 43 | A | 44 | A | 45 | G | 47 | A | 48 | C | 49 | G | 50 | * | U | 11 | A | 12 | C | 16 | A | 17 | G | 18 | ncsS | cWW | tsS | tSH | tHW | cwW | cWW | ||||
7 | IL_4V88_434 | 4V88 | 0.1831 | 1 | Kink-turn | A6 | SSU rRNA | C | 910 | U | 911 | U | 912 | G | 914 | A | 915 | U | 916 | U | 917 | * | G | 895 | U | 896 | C | 897 | A | 898 | G | 899 | ncsS | cWW | ntsS | tSH | tSs | ncWW | |||||
8 | IL_5J7L_035 | 5J7L | 0.2326 | 1 | Kink-turn | AA | SSU rRNA | C | 699 | G | 700 | U | 701 | G | 703 | A | 704 | G | 705 | A | 706 | * | U | 684 | G | 685 | U | 686 | A | 687 | G | 688 | cWW | ntsS | ntSH | tHW | tHS | cWW | |||||
9 | IL_6UFG_001 | 6UFG | 0.0999 | 1 | Kink-turn | A | RNA (166-MER) | C | 3 | A | 4 | U | 5 | G | 7 | A | 8 | U | 9 | C | 10 | * | G | 23 | G | 24 | G | 25 | A | 26 | G | 27 | cWW | ntsS | tSH | tHS | cWW | ||||||
10 | IL_6UFM_001 | 6UFM | 0.0000 | 1 | Kink-turn | B | RNA (98-MER) | C | 3 | G | 4 | A | 5 | G | 7 | A | 8 | U | 9 | C | 10 | * | G | 23 | G | 24 | G | 25 | A | 26 | G | 27 | cWW | tsS | tSH | tHS | cWW | ||||||
11 | IL_1T0K_001 | 1T0K | 0.1527 | 1 | Kink-turn | D+C | RNA (16-mer) | C | 54 | A | 55 | G | 56 | G | 58 | A | 59 | U | 60 | G | 61 | * | C | 9 | G | 10 | G | 11 | A | 12 | G | 13 | cWW | tsS | ntSH | ntHS | cWW | ||||||
12 | IL_4GXY_005 | 4GXY | 0.1621 | 1 | Kink-turn | A | Adenosylcobalamin riboswitch | C | 139 | G | 140 | A | 141 | G | 143 | A | 144 | U | 145 | C | 146 | * | G | 82 | G | 83 | G | 84 | A | 85 | G | 86 | ncsS | cWW | ntsS | tSH | tHS | cWW | |||||
13 | IL_8VTW_004 | 8VTW | 0.1198 | 1 | Kink-turn (H) | 1A | LSU rRNA | C | 97 | G | 98 | U | 99 | G | 102 | A | 103 | U | 104 | C | 105 | * | G | 81 | G | 82 | G | 83 | A | 84 | G | 85 | cWW | tsS | tSH | ntSs | tHS | cWW | |||||
14 | IL_6UFH_001 | 6UFH | 0.2157 | 1 | Kink-turn | A | RNA (167-MER) | C | 3 | A | 4 | U | 5 | G | 7 | A | 8 | U | 9 | C | 10 | * | G | 23 | G | 24 | G | 25 | A | 26 | G | 27 | ncsS | cWW | ntsS | tSH | tHS | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
CGACGACG*CAUCAG | 2 |
UUUCAACG*UAUCAA | 2 |
CAUCGAUC*GGGAG | 2 |
CGACGAUC*GAUUAG | 1 |
CAAUGACG*UAAGACAG | 1 |
CUUGGAUU*GUCAG | 1 |
CGUAGAGA*UGUAG | 1 |
CGACGAUC*GGGAG | 1 |
CAGAGAUG*CGGAG | 1 |
CGAGGAUC*GGGAG | 1 |
CGUGGAUC*GGGAG | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
GACGAC*AUCA | 2 |
UUCAAC*AUCA | 2 |
AUCGAU*GGA | 2 |
GACGAU*AUUA | 1 |
AAUGAC*AAGACA | 1 |
UUGGAU*UCA | 1 |
GUAGAG*GUA | 1 |
GACGAU*GGA | 1 |
AGAGAU*GGA | 1 |
GAGGAU*GGA | 1 |
GUGGAU*GGA | 1 |
Release history
Release | 3.88 |
---|---|
Date | 2024-09-11 |
Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Kink-turn (7)
- Kink-turn with non-sequential stacking (5)
- Kink-turn with non-sequential stacking (H) (1)
- Kink-turn (H) (1)
- Basepair signature
- cWW-tSS-tSH-L-R-R-L-cWW-L
- Heat map statistics
- Min 0.05 | Avg 0.39 | Max 0.68
Coloring options: