#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 5 6 7break 8 9 10 11 121-51-122-32-114-115-95-105-126-96-107-8
1 IL_6CZR_1236CZR0.60532Kink-turn with non-sequential stacking1a SSU rRNAC273G274A275G277A278C279G280*C238A239C241A242G243cWWntsStSHtHWcwWcWW
2 IL_4LFB_0114LFB0.58782Kink-turn with non-sequential stackingA SSU rRNAC277G278A279G281A282C283G284*C242A243C245A246G247ncsScWWntsStSHtHWcwWcWW
3 IL_5J7L_0145J7L0.59302Kink-turn with non-sequential stackingAA SSU rRNAC277G278A279G281A282U283C284*G242A243U245A246G247ncsScWWncSHtSHtHWcWwcWW
4 IL_8C3A_4108C3A0.57402Kink-turn with non-sequential stacking (H)CM SSU rRNAU346U347U348A350A351C352G353*U309A310C312A313A314ncsScWWtsSntSHtHWcwWcWW
5 IL_4V88_4024V880.56772Kink-turn with non-sequential stackingA6 SSU rRNAU348U349U350A352A353C354G355*U311A312C314A315A316ncsScWWtsSntSHtHWcwWcWW
6 IL_3RW6_0023RW60.59854Kink-turn with non-sequential stackingHconstitutive transport element(CTE)of Mason-Pfizer monkey virus RNAC43A44A45G47A48C49G50*U11A12C16A17G18ncsScWWtsStSHtHWcwWcWW
7 IL_4V88_4344V880.18311Kink-turnA6 SSU rRNAC910U911U912G914A915U916U917*G895U896C897A898G899ncsScWWntsStSHtSsncWW
8 IL_5J7L_0355J7L0.23261Kink-turnAA SSU rRNAC699G700U701G703A704G705A706*U684G685U686A687G688cWWntsSntSHtHWtHScWW
9 IL_6UFG_0016UFG0.09991Kink-turnARNA (166-MER)C3A4U5G7A8U9C10*G23G24G25A26G27cWWntsStSHtHScWW
10 IL_6UFM_0016UFM0.00001Kink-turnBRNA (98-MER)C3G4A5G7A8U9C10*G23G24G25A26G27cWWtsStSHtHScWW
11 IL_1T0K_0011T0K0.15271Kink-turnD+CRNA (16-mer)C54A55G56G58A59U60G61*C9G10G11A12G13cWWtsSntSHntHScWW
12 IL_4GXY_0054GXY0.16211Kink-turnAAdenosylcobalamin riboswitchC139G140A141G143A144U145C146*G82G83G84A85G86ncsScWWntsStSHtHScWW
13 IL_8VTW_0048VTW0.11981Kink-turn (H)1A LSU rRNAC97G98U99G102A103U104C105*G81G82G83A84G85cWWtsStSHntSstHScWW
14 IL_6UFH_0016UFH0.21571Kink-turnARNA (167-MER)C3A4U5G7A8U9C10*G23G24G25A26G27ncsScWWntsStSHtHScWW

3D structures

Complete motif including flanking bases
SequenceCounts
CGACGACG*CAUCAG2
UUUCAACG*UAUCAA2
CAUCGAUC*GGGAG2
CGACGAUC*GAUUAG1
CAAUGACG*UAAGACAG1
CUUGGAUU*GUCAG1
CGUAGAGA*UGUAG1
CGACGAUC*GGGAG1
CAGAGAUG*CGGAG1
CGAGGAUC*GGGAG1
CGUGGAUC*GGGAG1
Non-Watson-Crick part of the motif
SequenceCounts
GACGAC*AUCA2
UUCAAC*AUCA2
AUCGAU*GGA2
GACGAU*AUUA1
AAUGAC*AAGACA1
UUGGAU*UCA1
GUAGAG*GUA1
GACGAU*GGA1
AGAGAU*GGA1
GAGGAU*GGA1
GUGGAU*GGA1

Release history

Release3.88
Date2024-09-11
StatusUpdated, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Kink-turn (7)
  • Kink-turn with non-sequential stacking (5)
  • Kink-turn with non-sequential stacking (H) (1)
  • Kink-turn (H) (1)
  • Basepair signature
    cWW-tSS-tSH-L-R-R-L-cWW-L
    Heat map statistics
    Min 0.05 | Avg 0.39 | Max 0.68
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