IL_91286.1

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name for chain		1		2		3		4	break		5		6		7		8	1-8	2-7	3-5	3-6	4-5
1	IL_422D_001	422D	0.8924	0	Tandem non-canonical cWW pairs	A+B	RNA (12-mer)	U	7	U	8	C	9	G	10	*	U	19	U	20	C	21	G	22	cWW	cWW		cWW	cWW
2	IL_3O58_123	3O58	0.6090	0		1	LSU rRNA	U	2718	U	2719	G	2720	A	2721	*	U	2735	A	2736	C	2737	A	2738	cWW			cWW	cWW
3	IL_1QBP_002	1QBP	0.6580	0	Tandem non-canonical cWW pairs	B+A	RNA (15-mer)	U	22	U	23	C	24	G	25	*	U	7	U	8	C	9	G	10	cWW	ncWW		cWW	cWW
4	IL_1S72_012	1S72	0.5456	0		0	LSU rRNA	C	287	A	288	G	289	C	290	*	G	362	A	363	C	364	G	365	cWW	ncWW		ncWW	cWW
5	IL_1QBP_008	1QBP	0.6224	0		F+E	RNA (15-mer)	U	82	U	83	C	84	G	85	*	U	67	U	68	C	69	G	70	cWW	ncWW		cWW	cWW
6	IL_2PN4_004	2PN4	0.7089	0		A+B	RNA (24-mer) + RNA (20-mer)	C	62	U	63	U	64	C	65	*	G	102	U	103	C	104	G	105	cWW	cWW		cWw	cWW
7	IL_280D_001	280D	0.7117	0	Tandem non-canonical cWW pairs	A+B	RNA (12-mer)	C	5	U	6	U	7	G	8	*	C	17	U	18	U	19	G	20	cWW	cwW		cWw	cWW
8	IL_2XZM_008	2XZM	0.6465	0		A	SSU rRNA	U	293	U	294	U	295	C	296	*	G	105	U	106	U	107	A	108	cWW	cwW		cWw	cWW
9	IL_255D_001	255D	0.6543	0	Tandem non-canonical cWW pairs	A	RNA (12-mer)	U	5\|\|\|\|2_656	U	6\|\|\|\|2_656	C	7\|\|\|\|2_656	G	8\|\|\|\|2_656	*	U	5	U	6	C	7	G	8	cWW	cWW		cWW	cWW
10	IL_413D_001	413D	0.6753	0	Tandem non-canonical cWW pairs	A	RNA (13-mer)	U	6	U	7	C	8	G	9	*	U	6\|\|\|\|2_555	U	7\|\|\|\|2_555	C	8\|\|\|\|2_555	G	9\|\|\|\|2_555	cWW	cWW		cWW	cWW
11	IL_1S72_018	1S72	0.6131	0		0	LSU rRNA	C	596	A	597	C	598	G	599	*	C	558	U	559	C	560	G	561	cWW	ncWW		cWW	cWW
12	IL_2NOK_004	2NOK	0.6037	0		B+A	RNA (20-mer)	G	102	U	103	C	104	G	105	*	C	62	U	63	U	64	C	65	cWW	ncwW		ncWW	cWW
13	IL_3O30_048	3O30	0.6340	0		1	SSU rRNA	G	885	U	886	A	887	U	888	*	A	924	G	925	A	926	C	927	cWW			ncWW	cWW
14	IL_1GID_001	1GID	0.6265	1		A	P4-P6 RNA RIBOZYME DOMAIN	G	103	A	104	A	105	U	107	*	A	214	G	215	C	216	C	217	cWW	cWW		cWW	cWW
15	IL_2PN4_009	2PN4	0.6470	0		C+D	RNA (24-mer) + RNA (20-mer)	C	62	U	63	U	64	C	65	*	G	102	U	103	C	104	G	105	cWW	cWW		cWw	cWW
16	IL_1MFQ_004	1MFQ	0.5149	0	Tandem non-canonical cWW pairs	A	SRP RNA	G	156	A	157	C	158	C	159	*	G	138	A	139	C	140	C	141	cWW	ncWW		ncWW	cWW
17	IL_2XZM_002	2XZM	0.4063	0		A	SSU rRNA	A	23	C	24	A	25	U	26	*	A	593	U	594	A	595	U	596	cWW	cWW	ncWw	cWW	cWW
18	IL_2XZM_044	2XZM	0.5883	0		A	SSU rRNA	A	931	G	932	A	933	U	934	*	A	849	G	850	U	851	U	852	cWW	ncWW		cWW	cWW
19	IL_3O58_152	3O58	0.5012	0		1	LSU rRNA	C	3249	U	3250	U	3251	G	3252	*	C	3235	U	3236	U	3237	G	3238	cWW	ncwW		ncwW	cWW
20	IL_2XZM_091	2XZM	0.6064	0		A	SSU rRNA	A	1676	A	1677	U	1678	A	1679	*	U	1646	U	1647	C	1648	U	1649	cWW	cWWa		ncwW	cWW
21	IL_2ZJR_040	2ZJR	0.6517	0	Tandem non-canonical cWW pairs (H)	X	LSU rRNA	A	1175	U	1176	U	1177	C	1178	*	G	1196	U	1197	C	1198	U	1199	cWW	cWW		cWw	cWW
22	IL_1GID_008	1GID	0.6317	1	Tandem non-canonical cWW pairs	B	P4-P6 RNA RIBOZYME DOMAIN	G	103	A	104	A	105	U	107	*	A	214	G	215	C	216	C	217	cWW	cWW		cWW	cWW
23	IL_2QBG_041	2QBG	0.6672	0		B	LSU rRNA	C	1114	G	1115	G	1116	C	1117	*	G	1038	A	1039	A	1040	G	1041	cWW	cWW		cWW	cWW
24	IL_2XZM_088	2XZM	0.6582	0		A	SSU rRNA	U	1635	C	1636	U	1637	G	1638	*	C	1687	C	1688	U	1689	A	1690	cWW	cWW		cWW	cWW
25	IL_1D4R_001	1D4R	0.8138	0	Tandem non-canonical cWW pairs	B+A	29-MER OF MODIFIED SRP RNA HELIX 6	G	22	A	23	C	24	C	25	*	G	4	A	5	C	6	C	7	cWW	cWWa		cWW	cWW
26	IL_3O58_055	3O58	0.7060	0		1	LSU rRNA	U	1041	U	1042	C	1043	U	1044	*	A	1006	U	1007	U	1008	A	1009	cWW	cwW		cWW	cWW
27	IL_280D_002	280D	0.7336	0		D+C	RNA (12-mer)	C	41	U	42	U	43	G	44	*	C	29	U	30	U	31	G	32	cWW	cwW		cWw	cWW
28	IL_402D_001	402D	0.7432	0	Tandem non-canonical cWW pairs	B+A	RNA (8-mer)	C	111	C	112	A	113	G	114	*	C	103	C	104	A	105	G	106	cWW	cWW		cWW	cWW
29	IL_1QBP_005	1QBP	0.7322	0		D+C	RNA (15-mer)	U	52	U	53	C	54	G	55	*	U	37	U	38	C	39	G	40	cWW	ncWW		cWW	cWW
30	IL_1JID_002	1JID	0.7146	0	Tandem non-canonical cWW pairs	B	HELIX 6 OF HUMAN SRP RNA	G	156	A	157	C	158	C	159	*	G	138	A	139	C	140	C	141	cWW	cWW		cWW	cWW
31	IL_1D4R_003	1D4R	0.6890	0	Tandem non-canonical cWW pairs	A+B	29-MER OF MODIFIED SRP RNA HELIX 6	G	22	A	23	C	24	C	25	*	G	4	A	5	C	6	C	7	cWW	cWW		cWW	cWW
32	IL_2XZM_045	2XZM	0.6347	1		A	SSU rRNA	U	852	G	853	G	855	G	856	*	C	928	A	929	A	930	A	931	cWW	cWW		ncWW	cWW
33	IL_2ZZM_001	2ZZM	0.2213	0		B	tRNA	C	62	C	63	U	64	G	65	*	C	49	A	50	G	51	G	52	cWW			ncWW	cWW
34	IL_3O30_047	3O30	0.1969	1		1	SSU rRNA	C	950	A	951	A	952	G	953	*	C	874	G	875	G	877	G	878	cWW	ncWW		ncWW	cWW
35	IL_3O30_046	3O30	0.1372	0		1	SSU rRNA	G	871	G	872	U	873	C	874	*	G	953	G	954	A	955	C	956	cWW	cWW			cWW
36	IL_165D_001	165D	0.0000	0		A+B	DNA/RNA (5'-R(GPCPUPUPCPGPGPCP)-D((BRU))-3')	U	3	U	4	C	5	G	6	*	U	12	U	13	C	14	G	15	cWW	cWW		cWW	cWW
37	IL_1UN6_003	1UN6	0.1288	0		E	5S RIBOSOMAL RNA	C	79	U	80	G	81	G	82	*	C	94	C	95	U	96	G	97	cWW	ncWw			cWW
38	IL_3O58_083	3O58	0.1533	0		1	LSU rRNA	G	1817	U	1818	U	1819	U	1820	*	A	1625	U	1626	U	1627	C	1628	cWW				cWW
39	IL_3O58_056	3O58	0.1530	0		1	LSU rRNA	A	1009	G	1010	A	1011	G	1012	*	C	1038	U	1039	A	1040	U	1041	cWW	ncWW			cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
UUCG*UUCG	7
GACC*GACC	4
CUUG*CUUG	3
CUUC*GUCG	2
GAAUU*AGCC	2
UUGA*UACA	1
CAGC*GACG	1
UUUC*GUUA	1
CACG*CUCG	1
GUCG*CUUC	1
GUAU*AGAC	1
ACAU*AUAU	1
AGUU*AGAU	1
AAUA*UUCU	1
AUUC*GUCU	1
CGGC*GAAG	1
UCUG*CCUA	1
UUCU*AUUA	1
CCAG*CCAG	1
UGGGG*CAAA	1
CCUG*CAGG	1
CAAG*CGGGG	1
GGUC*GGAC	1
CUGG*CCUG	1
GUUU*AUUC	1
AGAG*CUAU	1

Non-Watson-Crick part of the motif

Sequence	Counts
UC*UC	7
UU*UU	5
AC*AC	4
UU*UC	3
UC*UU	2
AAU*GC	2
GU*GA	2
UG*AC	1
AG*AC	1
AC*UC	1
UA*GA	1
CA*UA	1
AU*UC	1
GG*AA	1
CU*CU	1
CA*CA	1
GGG*AA	1
CU*AG	1
AA*GGG	1
UG*CU	1
GA*UA	1

Release history

Release	0.5
Date	2011-12-08
Status	New id, 1 parent

Parent motifs

Parent motif	Common motif instances	Only in IL_91286.1	Only in the parent motif
IL_14877.3 Compare	IL_1S72_018, IL_2PN4_009, IL_2NOK_004, IL_2ZJR_040, IL_255D_001, IL_1JID_002, IL_1GID_008, IL_1S72_012, IL_280D_001, IL_2PN4_004, IL_413D_001, IL_1QBP_008, IL_1GID_001, IL_402D_001, IL_280D_002, IL_422D_001, IL_165D_001, IL_1QBP_002, IL_1D4R_001, IL_1QBP_005, IL_1D4R_003	IL_2ZZM_001, IL_2QBG_041, IL_3O58_083, IL_2XZM_002, IL_3O58_056, IL_1UN6_003, IL_3O58_055, IL_3O58_123, IL_2XZM_088, IL_2XZM_008, IL_2XZM_091, IL_3O30_047, IL_3O30_046, IL_3O58_152, IL_2XZM_045, IL_3O30_048, IL_1MFQ_004, IL_2XZM_044	IL_2NOK_007, IL_1S72_037, IL_1FJG_029, IL_1G1X_003, IL_2DR2_001, IL_2O3Y_003, IL_1L9A_002, IL_1L9A_005, IL_1F7Y_003

Children motifs

Child motif	Common motif instances	Only in IL_91286.1	Only in the child motif
IL_41766.1 Compare	IL_2PN4_009, IL_2NOK_004, IL_2PN4_004, IL_280D_002, IL_280D_001, IL_2QBG_041, IL_2XZM_091, IL_1D4R_001, IL_1D4R_003, IL_2ZJR_040, IL_1UN6_003, IL_402D_001, IL_2XZM_045, IL_2XZM_044, IL_1GID_008, IL_1JID_002, IL_1MFQ_004, IL_1GID_001, IL_1S72_018, IL_2XZM_002, IL_1S72_012, IL_2XZM_008, IL_2XZM_088, IL_422D_001	IL_2ZZM_001, IL_255D_001, IL_3O58_083, IL_3O58_056, IL_3O58_055, IL_3O58_123, IL_413D_001, IL_1QBP_008, IL_3O30_047, IL_3O30_046, IL_165D_001, IL_3O58_152, IL_1QBP_002, IL_3O30_048, IL_1QBP_005	IL_2NOK_007, IL_1FJG_029, IL_3R2D_002, IL_3U5H_106, IL_3U5F_048, IL_2XZM_052, IL_3U5F_083, IL_2AW7_036, IL_3U5F_046, IL_3U5H_043, IL_3U5H_134, IL_3U5F_008, IL_1G1X_003, IL_3U5F_047, IL_2A64_004, IL_3U5F_090, IL_3U5H_135, IL_3U5F_055, IL_4A1B_127, IL_4A1B_103, IL_4A1B_047, IL_3U5F_049, IL_2QBG_055, IL_3U5F_078, IL_1F7Y_003
IL_59016.1 Compare	IL_1QBP_002, IL_165D_001, IL_1QBP_005, IL_413D_001	IL_2PN4_009, IL_2NOK_004, IL_255D_001, IL_3O58_083, IL_2PN4_004, IL_2ZZM_001, IL_280D_002, IL_3O30_046, IL_280D_001, IL_3O30_048, IL_2QBG_041, IL_1QBP_008, IL_2XZM_091, IL_1D4R_001, IL_1D4R_003, IL_2ZJR_040, IL_3O58_056, IL_1UN6_003, IL_3O58_055, IL_3O58_123, IL_402D_001, IL_2XZM_045, IL_2XZM_044, IL_1GID_008, IL_3O58_152, IL_1JID_002, IL_1MFQ_004, IL_1GID_001, IL_1S72_018, IL_2XZM_002, IL_1S72_012, IL_2XZM_008, IL_2XZM_088, IL_3O30_047, IL_422D_001	IL_2QBG_046
IL_76831.1 Compare	IL_1QBP_008	IL_2PN4_009, IL_2NOK_004, IL_255D_001, IL_3O58_083, IL_165D_001, IL_2PN4_004, IL_2ZZM_001, IL_280D_002, IL_3O30_046, IL_280D_001, IL_3O30_048, IL_2QBG_041, IL_2XZM_091, IL_1QBP_002, IL_1D4R_001, IL_1QBP_005, IL_1D4R_003, IL_2ZJR_040, IL_3O58_056, IL_1UN6_003, IL_3O58_055, IL_3O58_123, IL_402D_001, IL_2XZM_045, IL_2XZM_044, IL_1GID_008, IL_3O58_152, IL_1JID_002, IL_1MFQ_004, IL_1GID_001, IL_1S72_018, IL_2XZM_002, IL_413D_001, IL_1S72_012, IL_2XZM_008, IL_2XZM_088, IL_3O30_047, IL_422D_001	IL_1CSL_001, IL_1DUQ_001, IL_1DUQ_003, IL_1DUQ_005, IL_1DUQ_007, IL_3GX5_004, IL_3NPB_007
IL_22858.1 Compare	IL_255D_001	IL_2PN4_009, IL_2NOK_004, IL_3O58_083, IL_165D_001, IL_2PN4_004, IL_2ZZM_001, IL_280D_002, IL_3O30_046, IL_280D_001, IL_3O30_048, IL_2QBG_041, IL_1QBP_008, IL_2XZM_091, IL_1QBP_002, IL_1D4R_001, IL_1QBP_005, IL_1D4R_003, IL_2ZJR_040, IL_3O58_056, IL_1UN6_003, IL_3O58_055, IL_3O58_123, IL_402D_001, IL_2XZM_045, IL_2XZM_044, IL_1GID_008, IL_3O58_152, IL_1JID_002, IL_1MFQ_004, IL_1GID_001, IL_1S72_018, IL_2XZM_002, IL_413D_001, IL_1S72_012, IL_2XZM_008, IL_2XZM_088, IL_3O30_047, IL_422D_001

Motif IL_91286.1 Version IL_91286.1 of this group appears in releases 0.5 to 0.5 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_91286.1 Version IL_91286.1 of this group appears in releases 0.5 to 0.5

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