#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3break 4 5 61-51-62-32-53-43-5
1 IL_4NVV_0674NVV0.88734A23S Ribosomal RNAC2012U2013U2015*A1716C1717G1721cWWcWW
2 IL_1VW3_0491VW30.88344A21S ribosomal RNAC1890U1891U1893*A1621C1622G1626cWWcWW
3 IL_2QBG_0652QBG0.84914B23S rRNAC1990U1991U1993*A1669C1670G1674cWWcWW
4 IL_2QBG_0962QBG0.61362B23S rRNAG2574C2575G2578*C2510U2511C2512cWWcWWcWW
5 IL_4IOA_0914IOA0.62582Isolated non-canonical cWW with bulges (H)X LSU rRNAG2553C2554G2557*C2489U2490C2491cWWncWWcWW
6 IL_4NVV_0934NVV0.60122A23S Ribosomal RNAG2586C2587G2590*C2522U2523C2524cWWncWWcWW
7 IL_1VW3_0791VW30.60092A21S ribosomal RNAG2841U2842G2845*C2776U2777C2778cWWcwWcWW
8 IL_4A1B_1124A1B0.67252126S RRNAG2931U2932G2935*C2867U2868C2869cWWcwWcWW
9 IL_3U5H_1143U5H0.65372525S rRNAG2943U2944G2947*C2879U2880C2881cWWcwWcWW
10 IL_1S72_0951S720.66831Isolated non-canonical cWW with bulges (H)0 LSU rRNAG2900C2901C2903*G2855A2856C2857cWWncWWcWW
11 IL_4IOA_1044IOA0.63951Y 5S rRNAG66C67G69*C19A20C21cWWcWWcWW
12 IL_1VW3_0921VW30.51231A21S ribosomal RNAA3245U3246C3248*G3158G3159U3160cWWncWWcWW
13 IL_3KTW_0023KTW0.58951Isolated non-canonical cWW with bulgesC SRP RNAA177U178C180*G152G153U154cWWncSHcWWncWW
14 IL_4A1C_0094A1C0.4266135S RRNAC92G93C94*G82G83G85cWWcWW
15 IL_3NJ7_0023NJ70.50600A+BRNA (10-mer)C6A7G8*C3A4G5cWWcWW
16 IL_3NJ6_0013NJ60.53640ARNA (10-mer)C6||||6_555A7||||6_555G8||||6_555*C3A4G5cWWcWW
17 IL_3NJ6_0023NJ60.53650ARNA (10-mer)C6A7G8*C3||||6_555A4||||6_555G5||||6_555cWWcWW
18 IL_4A1B_0244A1B0.50630126S RRNAA610A611C612*G555A556U557cWWncwWcWW
19 IL_4J5V_0014J5V0.37630BRNA (19-mer)C217||||4_555C218||||4_555G219||||4_555*C201A202G203cWWcWW
20 IL_4J5V_0074J5V0.37630BRNA (19-mer)C217C218G219*C201||||4_555A202||||4_555G203||||4_555cWWcWW
21 IL_4J5V_0064J5V0.30260BRNA (19-mer)C214C215G216*C204||||4_555A205||||4_555G206||||4_555cWWcWWcWW
22 IL_4J5V_0024J5V0.30260BRNA (19-mer)C214||||4_555C215||||4_555G216||||4_555*C204A205G206cWWcWWcWW
23 IL_4A1B_0274A1B0.49751126S RRNAC577G578G580*C589A590G591cWWcWW
24 IL_4K31_0034K310.44771Isolated non-canonical cWWB+CRNA (23-mer)A16A17G19*C7G8U9cWWcWWcWW
25 IL_4K31_0024K310.46381Isolated non-canonical cWWC+BRNA (23-mer)A16A17G19*C7G8U9cWWcWWcWW
26 IL_4NVV_0434NVV0.49791A23S Ribosomal RNAG1077A1078G1080*C1167G1168C1169cWWcWWcWW
27 IL_4BPP_0834BPP0.58381A18S RRNAG1707A1708G1710*C1616G1617C1618cWWncWWcWW
28 IL_2QEK_0012QEK0.55951A+BHIV-1 subtype F DIS genomic RNAG7A8G10*C15A16C17cWWcwWcWW
29 IL_1U6B_0011U6B0.56121Isolated non-canonical cWWB197-MERG19C20G22*C29A30C31cWWncWWcWW
30 IL_4A1B_0614A1B0.53711126S RRNAA1454U1456G1457*C1403G1404U1405cWWcSWcWW
31 IL_3U5F_0413U5F0.39440618S rRNAA799U800G801*U748U749U750cWWcwWcWW
32 IL_4NVV_0834NVV0.41600A23S Ribosomal RNAC2107U2108G2109*U2244U2245G2246cWWcwWcWW
33 IL_2QBG_0832QBG0.38580B23S rRNAC2232U2233G2234*U2085U2086G2087cWWcwWcWW
34 IL_4IOA_0784IOA0.36170Isolated non-canonical cWW (H)X LSU rRNAC2068U2069G2070*U2211U2212G2213cWWcwWcWW
35 IL_4BPP_0384BPP0.42251A18S RRNAG659U660G661*U647U649C650cWWcwWcWW
36 IL_3U5F_0743U5F0.55162618S rRNAG1352U1353G1354*U1369U1372C1373cWWcwWcWW
37 IL_4IOA_0544IOA0.59301X LSU rRNAG1573A1574G1576*U1447A1448C1449cWWncWwcWW
38 IL_4NVV_0554NVV0.59411A23S Ribosomal RNAC1604A1605G1607*U1479A1480G1481cWWntHWcWW
39 IL_2QBG_0852QBG0.68760B23S rRNAC2179U2180U2181*A2108U2109G2110cWWcWW
40 IL_1MFQ_0031MFQ0.47350A SRP RNAA163G164G165*U132A133U134cWWncWWcWW
41 IL_3TD0_0023TD00.37591Isolated non-canonical cWWB+ARNA (23-mer)G39A40G42*C7G8C9cWWcWWcWW
42 IL_3TD0_0053TD00.36201Isolated non-canonical cWWA+BRNA (23-mer)G16A17G19*C30G31C32cWWcWWcWW
43 IL_1NLC_0011NLC0.39471A+BHIV-1 DIS(MAL) genomic RNAG7G9G10*C15A16C17cWWcWWcWW
44 IL_1XJR_0031XJR0.35031As2m RNAG32G34G35*C16A17C18cWWcWWcWW
45 IL_1NLC_0021NLC0.35131B+AHIV-1 DIS(MAL) genomic RNAG7||AG9||AG10*C15A16C17cWWcWWcWW
46 IL_2QBG_0302QBG0.36930B23S rRNAG856G857G858*U919A920C921cWWcWWcWW
47 IL_1FJG_0101FJG0.28950Isolated non-canonical cWW (H)A SSU rRNAG190|||KU190|||LG191*C186C187C188cWWcWWcWW
48 IL_3U5H_1493U5H0.2937175S rRNAA84G85G87*C94A95U96cWWcWWcWW
49 IL_3CUN_0023CUN0.21940CRNA (92-MER)U57G58G59*C87A88G89ncWWcWWcWW
50 IL_5MSF_0015MSF0.25971Isolated non-canonical cWWRRNA (18-mer)G3||||P_1G4||||P_1G6||||P_1*C13||||P_1A14||||P_1C15||||P_1cWWcWWcWW
51 IL_3D0U_0063D0U0.25520Isolated non-canonical cWWALysine Riboswitch RNAG112G113G114*C134A135C136cWWcWWcWW
52 IL_3DIR_0063DIR0.25540ARNA (174-MER)G115G116G117*C137A138C139cWWcWWcWW
53 IL_3U5H_0493U5H0.31030525S rRNAG1087U1088G1089*C1069U1070U1071cWWncWwcWW
54 IL_3U5F_0613U5F0.31310618S rRNAG1464C1465G1466*C1173C1174U1175cWWncBWcWW
55 IL_4M4O_0014M4O0.30790Isolated non-canonical cWWBRNA (59-MER)A52C53G54*C6A7U8cWWcWWacWW
56 IL_3U5H_1163U5H0.39660525S rRNAG2912C2913G2914*C2889A2890U2891cWWncWWacWW
57 IL_4AOB_0054AOB0.37780Isolated non-canonical cWWA SAM-I riboswitchG71A72G73*C78G79U80cWWncWWcWW
58 IL_1FJG_0581FJG0.39980Isolated non-canonical cWW (H)A SSU rRNAG1486G1487G1488*C1412A1413U1414cWWcWWcWW
59 IL_2AW7_0642AW70.35640A16S ribosomal RNAG1486G1487G1488*C1412A1413U1414cWWcWWcWW
60 IL_1VW3_0311VW30.31830A21S ribosomal RNAA890A891A892*U877G878U879cWWcWWcWW
61 IL_3U5H_0443U5H0.29010525S rRNAA1009G1010A1011*U1039A1040U1041cWWcWWcWW
62 IL_3U5H_1333U5H0.26810525S rRNAG3252G3253G3254*C3233A3234C3235cWWcWWcWW
63 IL_1VW3_0091VW30.30940A21S ribosomal RNAG200A201A202*U176A177U178ncWWncWwcWW
64 IL_4A1B_0484A1B0.34330126S RRNAA1035G1036A1037*U1065A1066U1067ncWWncWWcWW
65 IL_1FJG_0061FJG0.27140Isolated non-canonical cWW (H)A SSU rRNAC99A101G102*C67G68G69cWWcWWcWW
66 IL_3U5F_0023U5F0.23110618S rRNAU35C36U37*A471U472A473cWWcWWcWW
67 IL_3TD1_0013TD10.29700B+ARNA (23-mer)G42U43C44*G5U6C7cWWncwWcWW
68 IL_1MWL_0041MWL0.30620A+BRNA (22-mer)G18||AU19C20*G26U27C28cWWncwWcWW
69 IL_2ZKO_0012ZKO0.26380Isolated non-canonical cWWD+CRNA (21-mer)U9U10A11*U9U10A11cWWcWW
70 IL_1VW3_0681VW30.19010A21S ribosomal RNAU2185U2195A2196*U2201U2202A2203cWWncwWcWW
71 IL_3RG5_0013RG50.30740Isolated non-canonical cWW (H)ASelenocysteine transfer RNAA5|||BU6G7*C66U67U67|||AcWWcwWcWW
72 IL_3UMY_0013UMY0.27070Isolated non-canonical cWW (H)B LSU rRNAA2108U2109G2110*C2179U2180U2181cWWcwWcWW
73 IL_3U5F_0433U5F0.37971618S rRNAA850U851C852*G819U821U822cWWcwWcWW
74 IL_1YZ9_0011YZ90.33190Isolated non-canonical cWWC+DRNA (11-mer)A4C5U6*A15C16U17cWWncWBcWW
75 IL_1YZ9_0021YZ90.32140Isolated non-canonical cWWF+ERNA (11-mer)A15C16U17*A4C5U6cWWncWBcWW
76 IL_3MEI_0023MEI0.38430Isolated non-canonical cWWB+ARNA (23-mer)G13C14C15*G8C9C10cWWncWBcWW
77 IL_3U5H_1183U5H0.37900525S rRNAA2926C2927C2928*G2918A2919U2920cWWcWWcWW
78 IL_4BPP_0024BPP0.40320A18S RRNAA23C24A25*U594A595U596cWWcWWcWW
79 IL_4A1B_1154A1B0.37830126S RRNAA2914C2915C2916*G2906A2907U2908cWWcWWcWW
80 IL_4IOA_0254IOA0.31800X LSU rRNAA936C937G938*C864A865U866cWWcWWcWW
81 IL_2O3X_0042O3X0.31360B+ARNA (23-mer)G28U29C30*G19U20C21cWWcwWcWW
82 IL_2O3V_0012O3V0.30570Isolated non-canonical cWWA+BRNA (23-mer)G5U6C7*G42U43C44cWWcwWcWW
83 IL_4A1B_0834A1B0.36070126S RRNAG1964C1965U1966*A2102A2103C2104cWWcWWcWW
84 IL_1ZX7_0081ZX70.37140G+HRNA (15-mer) + RNA (14-mer)G10U11C12*G24U25C26cWWcwWcWW
85 IL_1MFQ_0021MFQ0.32610Isolated non-canonical cWWA SRP RNAA228U229C230*G120U121U122cWWcwWcWW
86 IL_3BNQ_0063BNQ0.37960A+BA site of human mitochondrial ribosome, A chainG19U20C21*G5U6C7cWWcwWcWW
87 IL_4NGF_0024NGF0.33540Isolated non-canonical cWWG+HRNA (17-mer)G7U8C9*G7U8C9cWWncwWcWW
88 IL_1ZX7_0021ZX70.35110A+BRNA (15-mer) + RNA (14-mer)G10U11C12*G24U25C26cWWcwWcWW
89 IL_1FJG_0441FJG0.43820A SSU rRNAG1061U1062C1063*G1193U1194C1195cWWcwWcWW
90 IL_4A1B_0154A1B0.45780126S RRNAG443A444C445*G532G533U534cWWncWWcWW
91 IL_3U5H_0223U5H0.43780525S rRNAG792C793U794*G668U669C670cWWcWWcWW
92 IL_4IOA_0194IOA0.37210Isolated non-canonical cWW (H)X LSU rRNAG767U768C769*G754C755C756cWWcWWcWW
93 IL_4A1B_0714A1B0.34570126S RRNAA1685G1686C1687*G1812A1813U1814cWWcWWcWW
94 IL_4M4O_0024M4O0.35800Isolated non-canonical cWWBRNA (59-MER)G12G13C14*G46A47C48cWWcWWcWW
95 IL_4M6D_0114M6D0.37850Isolated non-canonical cWWHaptamerG12G13C14*G46A47C48cWWcWWncWW
96 IL_4BPP_0374BPP0.38470A18S RRNAA665A666C667*G641G642U643cWWcWWcWWncWW
97 IL_1FJG_0621FJG0.43130A SSU rRNAG1435U1436C1437*G1464C1465C1466cWWcWWcWW
98 IL_3U5F_0893U5F0.44010618S rRNAG1672G1673C1674*G1727A1728C1729cWWcWWcWW
99 IL_3IVK_0043IVK0.42970Cclass I ligase productA102A103C104*G87G88U89cWWcWWcWW
100 IL_3U5H_0763U5H0.41900525S rRNAG1661G1662C1663*G1786A1787C1788cWWcWWcWW
101 IL_3U5H_0513U5H0.41870525S rRNAA1120U1121U1122*A1136C1137U1138cWWcWWcWW
102 IL_4A1B_0524A1B0.39190126S RRNAA1147U1148U1149*A1163C1164U1165cWWcWWcWW
103 IL_3U5F_0153U5F0.20430618S rRNAA257C258U259*A206U207U208cWWcWWcWW
104 IL_4BPP_0154BPP0.20270A18S RRNAA201U202U203*A254C255U256cWWcWWcWW
105 IL_2QBG_0182QBG0.19980B23S rRNAA575U576G577*C564C565U566cWWcWWcWW
106 IL_1VW3_0151VW30.19440A21S ribosomal RNAA474U475G476*C463C464U465cWWcWWcWW
107 IL_4NVV_0164NVV0.20340A23S Ribosomal RNAA598U599G600*C587C588U589cWWcWWcWW
108 IL_4IOA_0104IOA0.25590Isolated non-canonical cWW (H)X LSU rRNAA584U585G586*C573C574U575cWWcWWcWW
109 IL_4BPP_0734BPP0.26680A18S RRNAC1323U1324G1325*U1341U1342G1343cWWcWwcWW
110 IL_4FNJ_0014FNJ0.24930ARNA (35-MER)C1U2G3*C33U34G35cWWcWwcWW
111 IL_1MZP_0011MZP0.30370Isolated non-canonical cWWBfragment of 23S rRNAC50U51U52*A4U5G6cWWcWwcWW
112 IL_3BNT_0013BNT0.28910Isolated non-canonical cWWAA site of human mitochondrial ribosomeG18||||4_665U19||||4_665C20||||4_665*G4U5C6cWWcWwcWW
113 IL_3BNT_0063BNT0.28910Isolated non-canonical cWWAA site of human mitochondrial ribosomeG18U19C20*G4||||4_665U5||||4_665C6||||4_665cWWcWwcWW
114 IL_3BNL_0043BNL0.30860A+BA site of bacterial ribosomeG18U19C20*G4U5C6cWWcWwcWW
115 IL_3BNL_0013BNL0.28650B+AA site of bacterial ribosomeG18U19C20*G4U5C6cWWcWwcWW
116 IL_3BNP_0013BNP0.31050B+AA site of human mitochondrial ribosome, B chainG17U18C19*G4U5C6cWWcWwcWW
117 IL_3BNP_0043BNP0.29780A+BA site of human mitochondrial ribosome, A chain + A site of human mitochondrial ribosome, B chainG18U19C20*G3U4C5cWWcWwcWW
118 IL_1O9M_0041O9M0.31920A+BEUBACTERIAL A-SITEG1494U1495C1496*G1405U1406C1407cWWcWwcWW
119 IL_4BPP_0884BPP0.35180A18S RRNAC1644C1645U1646*A1679A1680G1681cWWncWWacWW
120 IL_3U5H_0173U5H0.34970525S rRNAU429U430U431*A628U629A630cWWcWW
121 IL_1U9S_0071U9S0.33850Isolated non-canonical cWWARIBONUCLEASE PC191A192C193*G177C178G179cWWcWWcWW
122 IL_405D_002405D0.30620A+BRNA (16-mer)A10A11U12*A21C22U23cWWcWWcWW
123 IL_405D_001405D0.30500B+ARNA (16-mer)A26A27U28*A5C6U7cWWcWWcWW
124 IL_1Z7F_0021Z7F0.33350Isolated non-canonical cWWARNA (16-mer)A10A11U12*A5||||6_765C6||||6_765U7||||6_765cWWcWWcWW
125 IL_1Z7F_0011Z7F0.33350Isolated non-canonical cWWARNA (16-mer)A10||||6_765A11||||6_765U12||||6_765*A5C6U7cWWcWWcWW
126 IL_3U5F_0343U5F0.32330618S rRNAA973A974C975*G624C625U626cWWcWWcWW
127 IL_3U5H_0873U5H0.34540525S rRNAA2106A2107C2108*G1940C1941U1942cWWcWWcWW
128 IL_1VW3_0431VW30.26890A21S ribosomal RNAU1486A1487U1488*A1433A1434A1475cWWcWwcWW
129 IL_3U5F_0843U5F0.32120618S rRNAU1650A1651C1652*G1748A1749A1750cWWcWwcWW
130 IL_3U5H_1283U5H0.29180525S rRNAU3280U3281U3282*A3168U3169A3170cWWcWwcWW
131 IL_1S72_0471S720.312800 LSU rRNAC1303U1304C1305*G1349U1350G1351cWWcWwcWW
132 IL_4A1B_0414A1B0.30120126S RRNAU979U980U981*A990U991A992cWWcWwcWW
133 IL_3U5H_0363U5H0.26330525S rRNAU954U955U956*A965U966A967cWWcWwcWW
134 IL_3U5F_0633U5F0.37150618S rRNAG1213U1214C1215*G1448U1449U1450cWWncWwcWW
135 IL_1T0E_0021T0E0.34070Isolated non-canonical cWWC+ARNA (17-mer)G14U15C16*G10||AU11C12cWWcWwcWW
136 IL_1T0D_0021T0D0.29310B+ARNA (16-mer)G24U25C26*G10U11C12cWWcWwcWW
137 IL_4KYY_0014KYY0.27250Isolated non-canonical cWWA+BRNA 17-merG5U6U7*A11U12C13cWWcWwcWW
138 IL_4KYY_0034KYY0.27100Isolated non-canonical cWWB+ARNA 17-merG5U6U7*A11U12C13cWWcWwcWW
139 IL_2FQN_0012FQN0.25530B+ARNA (23-mer)G42U43C44*G5U6C7cWWcWwcWW
140 IL_3TD0_0063TD00.26640Isolated non-canonical cWWA+BRNA (23-mer)G19U20C21*G28U29C30cWWcWwcWW
141 IL_2OE5_0012OE50.28280Isolated non-canonical cWWA+BRNA (16-mer) + RNA (17-mer)G1405U1406C1407*G1494U1495C1496cWWcWwcWW
142 IL_4K31_0044K310.32910Isolated non-canonical cWWB+CRNA (23-mer)G19U20C21*G5U6C7cWWcWwcWW
143 IL_4K31_0014K310.32760Isolated non-canonical cWWC+BRNA (23-mer)G19U20C21*G5U6C7cWWcWwcWW
144 IL_2AW7_0522AW70.39860A16S ribosomal RNAG1193U1194C1195*G1061U1062C1063cWWcWwcWW
145 IL_4A1B_1044A1B0.31860126S RRNAG2775C2776U2777*A2758A2759C2760cWWcWWacWW
146 IL_4A1B_0284A1B0.27890126S RRNAG820U821U822*A689U690C691cWWncWwcWW
147 IL_4BPP_0824BPP0.26480A18S RRNAG1614U1615C1616*G1710U1711C1712cWWncWwcWW
148 IL_1FJG_0561FJG0.30230A SSU rRNAG1405U1406C1407*G1494U1495C1496cWWncWwcWW
149 IL_4BPP_0794BPP0.28000A18S RRNAG1518U1519U1520*A1535U1536C1537cWWcWW
150 IL_2AW7_0622AW70.24970A16S ribosomal RNAG1405U1406C1407*G1494U1495C1496cWWncWwcWW
151 IL_3U5F_0823U5F0.30140618S rRNAG1642U1643C1644*G1757U1758C1759cWWcWW
152 IL_3TD0_0013TD00.20910Isolated non-canonical cWWA+BRNA (23-mer)G5U6C7*G42U43C44cWWncWwcWW
153 IL_2FQN_0042FQN0.24590A+BRNA (23-mer)G19U20C21*G28U29C30cWWcWwcWW
154 IL_2O3V_0042O3V0.20790Isolated non-canonical cWWA+BRNA (23-mer)G19U20C21*G28U29C30cWWcWwcWW
155 IL_3BNQ_0013BNQ0.20230B+AA site of human mitochondrial ribosome, A chainG19U20C21*G5U6C7cWWncWwcWW
156 IL_3U5H_1213U5H0.22520525S rRNAA3040U3041U3042*A3012U3013U3014cWWcWwcWW
157 IL_4BPP_0344BPP0.25450A18S RRNAA951A952C953*G618C619U620cWWcWWcWW
158 IL_1MWL_0011MWL0.22310A+BRNA (22-mer)G4U5C6*G40U41C42cWWncWwcWW
159 IL_3TD1_0063TD10.23170B+ARNA (23-mer)G28U29C30*G19U20C21cWWncWwcWW
160 IL_1KFO_0021KFO0.26760Isolated non-canonical cWWARNA (19-mer)G11||||8_555A12||||8_555G13||||8_555*C6C7U8cWWcWWcWW
161 IL_1KFO_0031KFO0.26760Isolated non-canonical cWWARNA (19-mer)G11A12G13*C6||||8_555C7||||8_555U8||||8_555cWWcWWcWW
162 IL_2QBG_0342QBG0.38280B23S rRNAA905U906G907*U870U871U872cWWncWwcWW
163 IL_3U5F_0363U5F0.32830618S rRNAC646G647G648*C686G687G688cWWcWW
164 IL_4BPP_0564BPP0.20520A18S RRNAC1595C1596G1597*C1126A1127G1128cWWncWWacWW
165 IL_3FO4_0013FO40.21370AGuanine riboswitch C74U mutantU25C26G27*C43A44A45cWWcWWacWW
166 IL_4BPP_0684BPP0.32500A18S RRNAU1262G1263G1264*C1295G1296A1297cWWcWW
167 IL_4J5V_0054J5V0.18750BRNA (19-mer)C211C212G213*C207||||4_555A208||||4_555G209||||4_555cWWncWWcWW
168 IL_4J5V_0034J5V0.18750BRNA (19-mer)C211||||4_555C212||||4_555G213||||4_555*C207A208G209cWWncWWcWW
169 IL_1ZH5_0011ZH50.18570Isolated non-canonical cWWC+DRNA (9-mer)C3U4G5*C3U4G5cWWncwWcWW
170 IL_1ZEV_0051ZEV0.16700A+BRNA (18-mer)C13||AU14||AG15||A*C4||AU5||AG6||AcWWncwWcWW
171 IL_1ZEV_0021ZEV0.21630A+BRNA (18-mer)C4||AU5||AG6||A*C13||AU14||AG15||AcWWcWW
172 IL_3SZX_0033SZX0.20370Isolated non-canonical cWWB+ARNA (19-mer)C7U8G9*C13U14G15cWWncWwcWW
173 IL_4IOA_0304IOA0.20560Isolated non-canonical cWWX LSU rRNAG963A964G965*U974C975C976cWWcWWcWW
174 IL_4NVV_0364NVV0.22410A23S Ribosomal RNAG997A998G999*U1008C1009C1010cWWcWWcWW
175 IL_1ZEV_0031ZEV0.15010B+ARNA (18-mer)C10||AU11||AG12||A*C7||AU8||AG9||AcWWncwWcWW
176 IL_3SZX_0023SZX0.12140Isolated non-canonical cWWA+BRNA (19-mer)C10U11G12*C10U11G12cWWncWwcWW
177 IL_1ZEV_0061ZEV0.14960A+BRNA (18-mer)C16||AU17||AG18||A*C1||AU2||AG3||AcWWncWwcWW
178 IL_4E48_0064E480.07370Isolated non-canonical cWWA+BRNA (20-mer)C17U18G19*C22U23G24cWWncWwcWW
179 IL_4JK0_0024JK00.00010BRNA (21-mer)C514||||4_555U515||||4_555G516||||4_555*C508U509G510cWWncwWcWW
180 IL_4JK0_0044JK00.00000BRNA (21-mer)C514U515G516*C508||||4_555U509||||4_555G510||||4_555cWWncwWcWW
181 IL_3SYW_0023SYW0.13780B+ARNA (19-mer)C10U11G12*C10U11G12cWWncwWcWW
182 IL_1ZEV_0041ZEV0.18920A+BRNA (18-mer)C10||AU11||AG12||A*C7||AU8||AG9||AcWWncWwcWW
183 IL_1U6B_0051U6B0.23990Isolated non-canonical cWWB197-MERC100U101U102*A117U118G119cWWcWwcWW
184 IL_1ZEV_0011ZEV0.14030A+BRNA (18-mer)C1||AU2||AG3||A*C16||AU17||AG18||AncWWcWWcWwcWW
185 IL_4JK0_0054JK00.14450BRNA (21-mer)C505||||4_555U506||||4_555G507||||4_555*C517U518G519cWWcWwcWW
186 IL_4JK0_0014JK00.14450BRNA (21-mer)C505U506G507*C517||||4_555U518||||4_555G519||||4_555cWWcWwcWW
187 IL_3SYW_0033SYW0.17550B+ARNA (19-mer)C7U8G9*C13U14G15||AcWWcWwcWW
188 IL_3SYW_0013SYW0.17620A+BRNA (19-mer)C7U8G9*C13U14G15||AcWWcWwcWW
189 IL_4BPP_0014BPP0.20100A18S RRNAU596U597A598*U21U22A23cWWcWwcWW
190 IL_3U5F_0503U5F0.27210618S rRNAU917U918A919*U893U894G895ncWWcWwcWW
191 IL_1VW3_0011VW30.22420A21S ribosomal RNAC3275U3276A3277*U22U23G24cWWcWwcWW
192 IL_4BPP_0584BPP0.42270A18S RRNAC1145C1146U1147*G1435C1436G1437cWWncWBcWW
193 IL_157D_001157D0.19240A+BRNA (12-mer)C3G4A5*U20A21G22cWWcWWcWW
194 IL_2Q1R_0022Q1R0.22120ARNA (12-mer)C1003||||2_755G1004||||2_755A1005||||2_755*U1008A1009G1010cWWcWWcWW
195 IL_2Q1R_0012Q1R0.22120ARNA (12-mer)C1003G1004A1005*U1008||||2_755A1009||||2_755G1010||||2_755cWWcWWcWW
196 IL_157D_002157D0.23910B+ARNA (12-mer)C15G16A17*U8A9G10cWWcWWcWW
197 IL_4NVV_0194NVV0.22290A23S Ribosomal RNAC853U854G855*C719C720G721cWWcWWcWW
198 IL_2QBG_0202QBG0.22630B23S rRNAC806U807G808*C672C673G674cWWcWWcWW
199 IL_4IOA_0134IOA0.22600X LSU rRNAC819U820A821*U685C686G687cWWcWWcWW
200 IL_1VW3_0161VW30.19140A21S ribosomal RNAC697U698G699*C581C582G583cWWcWWcWW
201 IL_3U5H_0283U5H0.25410525S rRNAC938U939G940*C803C804G805cWWcWWcWW
202 IL_4A1B_0344A1B0.27970126S RRNAC963U964G965*C828C829G830cWWcWWcWW
203 IL_1S72_0241S720.30300Isolated non-canonical cWW (H)0 LSU rRNAC899U900G901*C763C764G765cWWcWWcWW
204 IL_3U5H_0083U5H0.28380525S rRNAC125U126G127*C141C142G143cWWcWWcWW
205 IL_3RW6_0043RW60.31710Isolated non-canonical cWWHconstitutive transport element(CTE)of Mason-Pfizer monkey virus RNAC33U34G35*C24C25G26cWWcWWcWW
206 IL_4E48_0054E480.23550Isolated non-canonical cWWB+ARNA (20-mer)C25U26G27*C14U15G16cWWcWW
207 IL_4E59_0014E590.16450Isolated non-canonical cWWA+BRNA duplex containing CCG repeatsC2C3G4*C2C3G4cWWncBWcWW
208 IL_4E48_0034E480.21460Isolated non-canonical cWWB+ARNA (20-mer)C31U32G33*C8U9G10cWWcWW
209 IL_4FNJ_0024FNJ0.22470ARNA (35-MER)C4U5G6*C30U31G32cWWcWW
210 IL_1UN6_0051UN60.17150Isolated non-canonical cWWF5S RIBOSOMAL RNAC95U96G97*C79U80G81cWWncWwcWW
211 IL_3SZX_0013SZX0.17890Isolated non-canonical cWWB+ARNA (19-mer)C13U14G15*C7U8G9cWWcWW
212 IL_4E48_0044E480.19860Isolated non-canonical cWWA+BRNA (20-mer)C11U12G13*C28U29G30cWWncWwcWW
213 IL_4E48_0024E480.20880Isolated non-canonical cWWA+BRNA (20-mer)C5U6G7*C34U35G36cWWcWW
214 IL_4E48_0014E480.20920Isolated non-canonical cWWB+ARNA (20-mer)C37U38G39*C2U3G4cWWcWW
215 IL_3GLP_0023GLP0.24430A+BRNA (8-mer)C5U6G7*C2||AU3||AG4ncWwcWW
216 IL_1RPU_0011RPU0.28720Isolated non-canonical cWWD+CRNA (21-mer)U9||AC10||AA11||A*U9||AC10||AA11||AcWWncBWcWW
217 IL_4A1B_0134A1B0.35940126S RRNAC422U423G424*C656U657G658cWWcWW
218 IL_4IOA_0444IOA0.40330X LSU rRNAC1252C1253G1254*C1218C1219G1220cWWncBWcWW
219 IL_3U5F_0723U5F0.36791618S rRNAC1339A1341C1342*G1383A1384G1385cWWncwWcWW
220 IL_4BPP_0704BPP0.41081A18S RRNAC1311G1313C1314*G1353A1354G1355cWWcWWcWW
221 IL_3GLP_0013GLP0.30640A+BRNA (8-mer)C2U3G4*C5||AU6G7cWWcWW
222 IL_4IOA_1094IOA0.38190Y 5S rRNAU82C83G84*C97C98G99cWWcBWcWW
223 IL_3U5F_0873U5F0.36920618S rRNAU1665U1666A1667*U1734U1735G1736cWWcWW
224 IL_4KYY_0024KYY0.41450B+ARNA 17-merU8U9G10*U8U9G10cWWcWW
225 IL_2AW7_0632AW70.55221A16S ribosomal RNAG1491A1492G1494*C1407A1408C1409ncWWcWW
226 IL_2QEK_0022QEK0.74061B+AHIV-1 subtype F DIS genomic RNAG7A9G10*C15A16C17cWWcWW
227 IL_1O9M_0031O9M0.68401A+BEUBACTERIAL A-SITEG1491A1493G1494*C1407A1408C1409cWWcWW
228 IL_3LOA_0033LOA0.76731Decoding loop with one bulged AB+ARNA (23-mer)G1491A1493G1494*C1407A1408C1409cWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
GUC*GUC34
CUG*CUG29
CCG*CAG7
CUG*CCG7
GAAG*CAC5
CUG*UUG4
GGC*GAC4
UUU*AUA4
AAU*ACU4
GUU*AUC4
CGA*UAG4
GUGAG*CUC3
CAG*CAG3
GAAG*CGC3
CUU*AUG3
GAGG*CAC3
GGG*CAC3
UUA*UUA3
AUU*ACU3
AUG*CCU3
AAC*GCU3
GCGAG*CUC2
AAAG*CGU2
AUG*UUU2
ACG*CAU2
GGG*CAU2
AGA*UAU2
AUG*CUU2
ACU*ACU2
ACC*GAU2
GCU*AAC2
GUC*GCC2
AAC*GGU2
GAG*CCU2
GAG*UCC2
UUA*UUG2
CCG*CCG2
ACUCUG*CUGU1
CUGU*ACUCGG1
CUGU*ACUAGG1
CUC*GCGAG1
GCAC*GAC1
GCAG*CAC1
AUAC*GGU1
AUUC*GGU1
CGC*GGUG1
AAC*GAU1
CGGG*CAG1
GAUG*CGC1
GCCG*CAC1
AGUG*CGU1
GUG*UUUC1
GUG*UUAUC1
GACG*UAC1
UAG*CAGG1
AGG*UAU1
GGG*UAC1
GUG*CCC1
AGUG*CAU1
UGG*CAG1
GGAG*CAC1
GUG*CUU1
GCG*CCU1
GCG*CAU1
GAG*CGU1
AAA*UGU1
GAA*UAU1
CAG*CGG1
UCU*AUA1
AUC*GUUU1
GCC*GCC1
ACA*UAU1
AUC*GUU1
GAC*GGU1
GCU*GUC1
AGC*GAU1
ACU*AUU1
CCU*AUG1
CCU*AAG1
CAC*GCG1
UAU*AAA1
UAC*GAA1
CUC*GUG1
GUC*GUU1
AUU*AUU1
CGG*CGG1
UCG*CAA1
UGG*CGA1
CUA*UUG1
CCU*GCG1
CCG*CUG1
CUA*UCG1
UCA*UCA1
CUAC*GAG1
CUGC*GAG1
UCG*CCG1
UUG*UUG1
Non-Watson-Crick part of the motif
SequenceCounts
U*U94
G*A19
C*A17
U*C17
A*C12
C*C9
A*A7
A*G6
AA*G5
AA*A5
C*U5
UGA*U3
AG*A3
CGA*U2
CA*A2
U*UU2
G*G2
CUCU*UG1
UG*CUCG1
UG*CUAG1
U*CGA1
UA*G1
UU*G1
G*GU1
GG*A1
AU*G1
CC*A1
GU*G1
U*UAU1
AC*A1
A*AG1
GU*A1
GA*A1
UA*A1
UG*A1

Release history

Release1.14
Date2014-04-27
Status> 2 parents

Parent motifs

Parent motifCommon motif instancesOnly in IL_78141.1Only in the parent motif
IL_47174.11
Compare
IL_3KTW_002, IL_2AW7_052, IL_1NLC_002, IL_1T0E_002, IL_1NLC_001, IL_4FNJ_001, IL_4A1B_115, IL_3U5F_041, IL_4A1B_052, IL_1O9M_004, IL_2O3V_001, IL_4IOA_078, IL_1O9M_003, IL_4J5V_003, IL_4J5V_002, IL_4J5V_001, IL_2QBG_020, IL_4J5V_006, IL_4J5V_005, IL_3SZX_001, IL_3U5H_076, IL_157D_002, IL_157D_001, IL_1ZH5_001, IL_2FQN_001, IL_1YZ9_002, IL_2FQN_004, IL_2QBG_096, IL_4BPP_015, IL_4BPP_068, IL_4E59_001, IL_4IOA_044, IL_4A1B_048, IL_2QBG_018, IL_1FJG_058, IL_2O3X_004, IL_4A1B_041, IL_1Z7F_002, IL_1FJG_056, IL_3U5F_050, IL_1Z7F_001, IL_4A1B_112, IL_3BNL_004, IL_3SYW_001, IL_3BNL_001, IL_3TD1_006, IL_4E48_005, IL_4E48_004, IL_4E48_006, IL_4E48_001, IL_4E48_003, IL_4E48_002, IL_3CUN_002, IL_3FO4_001, IL_4BPP_002, IL_1XJR_003, IL_4BPP_001, IL_2QBG_083, IL_4IOA_054, IL_3TD0_006, IL_3U5H_008, IL_4FNJ_002, IL_2QEK_001, IL_4A1B_071, IL_3U5F_043, IL_1ZEV_004, IL_1ZEV_005, IL_1ZEV_006, IL_1ZEV_001, IL_1ZEV_002, IL_1ZEV_003, IL_4JK0_002, IL_4JK0_001, IL_3TD0_002, IL_4JK0_005, IL_4JK0_004, IL_3U5H_087, IL_4K31_003, IL_3BNQ_001, IL_1S72_047, IL_4BPP_073, IL_4BPP_070, IL_3NJ7_002, IL_4K31_002, IL_4K31_001, IL_2Q1R_002, IL_4BPP_079, IL_4K31_004, IL_4IOA_104, IL_4A1B_061, IL_4J5V_007, IL_1MFQ_003, IL_1MFQ_002, IL_4BPP_037, IL_4IOA_109, IL_4IOA_025, IL_4KYY_001, IL_4BPP_088, IL_4NGF_002, IL_4BPP_082, IL_4BPP_083, IL_1KFO_003, IL_1KFO_002, IL_3U5F_034, IL_3U5F_036, IL_3UMY_001, IL_5MSF_001, IL_3U5H_118, IL_4A1C_009, IL_1FJG_062, IL_3U5F_084, IL_3U5F_087, IL_3U5H_149, IL_4A1B_013, IL_3TD1_001, IL_3U5F_082, IL_4IOA_030, IL_3U5H_028, IL_3U5F_089, IL_4AOB_005, IL_3BNQ_006, IL_3U5H_017, IL_3BNP_001, IL_3D0U_006, IL_3BNP_004, IL_3U5F_002, IL_3BNT_006, IL_3BNT_001, IL_4BPP_034, IL_3IVK_004, IL_405D_002, IL_2QBG_034, IL_1MWL_004, IL_405D_001, IL_1MWL_001, IL_1T0D_002, IL_4KYY_003, IL_1UN6_005, IL_3U5H_036, IL_2AW7_064, IL_2AW7_063, IL_1S72_095, IL_1FJG_010, IL_3RW6_004, IL_3U5H_133, IL_3DIR_006, IL_3LOA_003, IL_2ZKO_001, IL_3SYW_002, IL_3SYW_003, IL_3U5F_015, IL_4IOA_010, IL_3U5H_022, IL_1RPU_001, IL_4A1B_015, IL_1YZ9_001, IL_1FJG_006, IL_4A1B_034, IL_4IOA_013, IL_3RG5_001, IL_3U5H_128, IL_2OE5_001, IL_4IOA_019, IL_3U5H_121, IL_4M6D_011, IL_1S72_024, IL_3U5F_063, IL_3U5F_061, IL_2Q1R_001, IL_1FJG_044, IL_3U5H_049, IL_4BPP_058, IL_3SZX_002, IL_3SZX_003, IL_3GLP_002, IL_3NJ6_002, IL_3NJ6_001, IL_3GLP_001, IL_4A1B_083, IL_3TD0_005, IL_1U6B_005, IL_3TD0_001, IL_4BPP_056, IL_1ZX7_008, IL_1U6B_001, IL_4A1B_027, IL_4A1B_024, IL_4M4O_001, IL_1ZX7_002, IL_4BPP_038, IL_1MZP_001, IL_3U5H_114, IL_3U5H_116, IL_3MEI_002, IL_3U5H_051, IL_2QBG_085, IL_4A1B_028, IL_3U5F_072, IL_2QBG_030, IL_3U5H_044, IL_4A1B_104, IL_4M4O_002, IL_1U9S_007, IL_4IOA_091, IL_2O3V_004, IL_2AW7_062IL_4NVV_093, IL_2QBG_065, IL_1VW3_009, IL_2QEK_002, IL_1VW3_001, IL_1VW3_043, IL_4NVV_043, IL_1VW3_049, IL_4NVV_067, IL_1VW3_068, IL_4NVV_083, IL_1VW3_079, IL_1VW3_031, IL_1VW3_015, IL_1VW3_016, IL_3U5F_074, IL_4KYY_002, IL_4NVV_055, IL_4NVV_016, IL_4NVV_036, IL_1VW3_092, IL_4NVV_019IL_2AW7_049, IL_4BPP_065, IL_3V2F_081, IL_3V2F_080, IL_3V2F_094, IL_3U5F_065, IL_3U5F_067, IL_3V2F_034, IL_3V2F_053, IL_4A1B_107, IL_3V2F_017, IL_3V2F_015, IL_3U5H_109
IL_82444.1
Compare
IL_2QEK_002, IL_4KYY_002, IL_2QBG_065IL_3TD0_002, IL_3KTW_002, IL_1FJG_010, IL_2AW7_052, IL_1NLC_002, IL_1T0E_002, IL_1NLC_001, IL_4FNJ_001, IL_4A1B_115, IL_3U5F_041, IL_4A1B_052, IL_1O9M_004, IL_4JK0_004, IL_4IOA_078, IL_1O9M_003, IL_4J5V_003, IL_4J5V_002, IL_4J5V_001, IL_2QBG_020, IL_4J5V_006, IL_4J5V_005, IL_3SZX_001, IL_3U5H_076, IL_1VW3_068, IL_157D_002, IL_157D_001, IL_1ZH5_001, IL_2FQN_001, IL_1YZ9_002, IL_2FQN_004, IL_2QBG_096, IL_4BPP_015, IL_4BPP_068, IL_4E59_001, IL_4IOA_044, IL_4A1B_048, IL_2QBG_018, IL_1VW3_079, IL_2O3X_004, IL_4A1B_041, IL_1Z7F_002, IL_1FJG_056, IL_3U5F_050, IL_1Z7F_001, IL_4A1B_112, IL_3BNL_004, IL_3SYW_001, IL_3BNL_001, IL_3TD1_006, IL_4E48_005, IL_4E48_004, IL_4E48_006, IL_4E48_001, IL_4E48_003, IL_4E48_002, IL_3CUN_002, IL_3FO4_001, IL_4BPP_002, IL_1XJR_003, IL_4BPP_001, IL_2QBG_083, IL_4IOA_054, IL_3U5F_082, IL_3TD0_006, IL_1VW3_009, IL_3U5H_028, IL_4FNJ_002, IL_2QEK_001, IL_4A1B_071, IL_3U5F_043, IL_1VW3_001, IL_1ZEV_004, IL_1ZEV_005, IL_1ZEV_006, IL_1ZEV_001, IL_1ZEV_002, IL_1ZEV_003, IL_4JK0_002, IL_4JK0_001, IL_4NVV_067, IL_4JK0_005, IL_2O3V_001, IL_3U5H_087, IL_4K31_003, IL_1S72_047, IL_4BPP_073, IL_4BPP_070, IL_3NJ7_002, IL_4K31_002, IL_4K31_001, IL_2Q1R_002, IL_4BPP_079, IL_4K31_004, IL_4IOA_104, IL_4A1B_061, IL_4J5V_007, IL_1VW3_016, IL_1MFQ_002, IL_4IOA_109, IL_4IOA_025, IL_4KYY_001, IL_4BPP_088, IL_4NGF_002, IL_4NVV_055, IL_4BPP_082, IL_4BPP_083, IL_1KFO_003, IL_1KFO_002, IL_3U5F_034, IL_3U5F_036, IL_1VW3_092, IL_3UMY_001, IL_5MSF_001, IL_1ZX7_002, IL_4A1C_009, IL_1FJG_062, IL_3U5F_084, IL_3U5F_087, IL_3U5H_149, IL_4A1B_013, IL_3TD1_001, IL_1VW3_015, IL_4IOA_030, IL_3BNQ_001, IL_3U5F_089, IL_1MFQ_003, IL_3BNQ_006, IL_3U5H_017, IL_4NVV_043, IL_3BNP_001, IL_3D0U_006, IL_3BNP_004, IL_3U5F_002, IL_3BNT_006, IL_3BNT_001, IL_4BPP_034, IL_2O3V_004, IL_3IVK_004, IL_405D_002, IL_2QBG_034, IL_1MWL_004, IL_405D_001, IL_1MWL_001, IL_1T0D_002, IL_4KYY_003, IL_1UN6_005, IL_3U5H_036, IL_2AW7_064, IL_2AW7_063, IL_1S72_095, IL_1VW3_031, IL_3RW6_004, IL_3U5H_133, IL_3DIR_006, IL_3LOA_003, IL_2ZKO_001, IL_3SYW_002, IL_3SYW_003, IL_3U5F_015, IL_4IOA_010, IL_3U5H_022, IL_3MEI_002, IL_4NVV_036, IL_1RPU_001, IL_4A1B_015, IL_1YZ9_001, IL_1FJG_006, IL_3U5H_008, IL_4A1B_034, IL_4NVV_093, IL_4IOA_013, IL_3RG5_001, IL_3U5H_128, IL_2OE5_001, IL_4IOA_019, IL_3U5H_121, IL_4M6D_011, IL_1VW3_043, IL_1S72_024, IL_3U5F_063, IL_3U5F_061, IL_2Q1R_001, IL_1FJG_044, IL_1VW3_049, IL_4BPP_058, IL_3SZX_002, IL_3SZX_003, IL_3GLP_002, IL_3NJ6_002, IL_3NJ6_001, IL_3GLP_001, IL_4A1B_083, IL_3TD0_005, IL_4NVV_083, IL_1U6B_005, IL_3TD0_001, IL_4BPP_056, IL_1ZX7_008, IL_1U6B_001, IL_4A1B_027, IL_4A1B_024, IL_4M4O_001, IL_4BPP_037, IL_4BPP_038, IL_1MZP_001, IL_4NVV_016, IL_3U5H_114, IL_4AOB_005, IL_3U5H_116, IL_3U5H_118, IL_3U5F_074, IL_3U5H_051, IL_2QBG_085, IL_4A1B_028, IL_3U5F_072, IL_2QBG_030, IL_3U5H_044, IL_4A1B_104, IL_1FJG_058, IL_4M4O_002, IL_1U9S_007, IL_4IOA_091, IL_4NVV_019, IL_3U5H_049, IL_2AW7_062IL_420D_002, IL_420D_001, IL_4BPP_020, IL_3V2F_064, IL_2AW7_011, IL_1S72_062, IL_406D_002, IL_3U5F_044, IL_3R1D_002, IL_3W3S_003, IL_3U5F_023, IL_3U5F_022, IL_3NJ7_001, IL_4E5C_001, IL_4BPP_012, IL_4IOA_029, IL_3U5H_072, IL_3U5H_151, IL_3SJ2_002, IL_3SJ2_003, IL_3SJ2_001, IL_3U5F_070, IL_3CZW_002, IL_3CZW_001, IL_2R22_001, IL_2XXA_011
IL_90459.3
Compare
IL_3U5F_074IL_3TD0_002, IL_3KTW_002, IL_1FJG_010, IL_2AW7_052, IL_1NLC_002, IL_1T0E_002, IL_1NLC_001, IL_4FNJ_001, IL_4A1B_115, IL_3U5F_041, IL_4A1B_052, IL_1O9M_004, IL_4JK0_004, IL_4IOA_078, IL_1O9M_003, IL_4J5V_003, IL_4J5V_002, IL_4J5V_001, IL_2QBG_020, IL_4J5V_006, IL_4J5V_005, IL_3SZX_001, IL_3U5H_076, IL_1VW3_068, IL_157D_002, IL_157D_001, IL_1ZH5_001, IL_2FQN_001, IL_1YZ9_002, IL_2FQN_004, IL_2QBG_096, IL_4BPP_015, IL_4BPP_068, IL_4E59_001, IL_4IOA_044, IL_4A1B_048, IL_2QBG_018, IL_1VW3_079, IL_2O3X_004, IL_4A1B_041, IL_1Z7F_002, IL_1FJG_056, IL_3U5F_050, IL_1Z7F_001, IL_4A1B_112, IL_3BNL_004, IL_3SYW_001, IL_3BNL_001, IL_3TD1_006, IL_4E48_005, IL_4E48_004, IL_4E48_006, IL_4E48_001, IL_4E48_003, IL_4E48_002, IL_3CUN_002, IL_3FO4_001, IL_4BPP_002, IL_1XJR_003, IL_4BPP_001, IL_2QBG_083, IL_4IOA_054, IL_3U5F_082, IL_3TD0_006, IL_1VW3_009, IL_3U5H_028, IL_2QEK_002, IL_2QEK_001, IL_4A1B_071, IL_3U5F_043, IL_1VW3_001, IL_1ZEV_004, IL_1ZEV_005, IL_1ZEV_006, IL_1ZEV_001, IL_1ZEV_002, IL_1ZEV_003, IL_4JK0_002, IL_4JK0_001, IL_4NVV_067, IL_4JK0_005, IL_2O3V_001, IL_3U5H_087, IL_4K31_003, IL_1S72_047, IL_4BPP_073, IL_4BPP_070, IL_3NJ7_002, IL_4K31_002, IL_4K31_001, IL_2Q1R_002, IL_4BPP_079, IL_4K31_004, IL_4IOA_104, IL_4A1B_061, IL_4J5V_007, IL_1VW3_016, IL_1MFQ_002, IL_4IOA_109, IL_4IOA_025, IL_4KYY_001, IL_4BPP_088, IL_4NGF_002, IL_4NVV_055, IL_4BPP_082, IL_4BPP_083, IL_1KFO_003, IL_1KFO_002, IL_3U5F_034, IL_3U5F_036, IL_1VW3_092, IL_3UMY_001, IL_5MSF_001, IL_1ZX7_002, IL_4A1C_009, IL_3BNP_004, IL_1FJG_062, IL_3U5F_084, IL_3U5F_087, IL_3U5H_149, IL_4A1B_013, IL_3TD1_001, IL_1VW3_015, IL_4IOA_030, IL_3BNQ_001, IL_3U5F_089, IL_1MFQ_003, IL_3BNQ_006, IL_3U5H_017, IL_4NVV_043, IL_3BNP_001, IL_3D0U_006, IL_2QBG_065, IL_3U5F_002, IL_3BNT_006, IL_3BNT_001, IL_4BPP_034, IL_2O3V_004, IL_3IVK_004, IL_405D_002, IL_2QBG_034, IL_1MWL_004, IL_405D_001, IL_1MWL_001, IL_1T0D_002, IL_4KYY_003, IL_1UN6_005, IL_3U5H_036, IL_2AW7_064, IL_2AW7_063, IL_1S72_095, IL_1VW3_031, IL_3RW6_004, IL_3U5H_133, IL_3DIR_006, IL_3LOA_003, IL_2ZKO_001, IL_3SYW_002, IL_3SYW_003, IL_3U5F_015, IL_2QBG_030, IL_4IOA_010, IL_3U5H_022, IL_3MEI_002, IL_4NVV_036, IL_1RPU_001, IL_4A1B_015, IL_1YZ9_001, IL_1FJG_006, IL_3U5H_008, IL_4A1B_034, IL_4NVV_093, IL_4IOA_013, IL_3RG5_001, IL_3U5H_128, IL_2OE5_001, IL_4IOA_019, IL_3U5H_121, IL_4M6D_011, IL_1VW3_043, IL_1S72_024, IL_3U5F_063, IL_3U5F_061, IL_2Q1R_001, IL_1FJG_044, IL_1VW3_049, IL_4BPP_058, IL_3SZX_002, IL_3SZX_003, IL_3GLP_002, IL_3NJ6_002, IL_3NJ6_001, IL_3GLP_001, IL_4FNJ_002, IL_4A1B_083, IL_3TD0_005, IL_4NVV_083, IL_1U6B_005, IL_3TD0_001, IL_4BPP_056, IL_1ZX7_008, IL_1U6B_001, IL_4A1B_027, IL_4A1B_024, IL_4M4O_001, IL_4BPP_037, IL_4BPP_038, IL_1MZP_001, IL_4NVV_016, IL_3U5H_114, IL_4AOB_005, IL_3U5H_116, IL_3U5H_118, IL_3U5H_051, IL_2QBG_085, IL_4A1B_028, IL_3U5F_072, IL_4KYY_002, IL_3U5H_044, IL_4A1B_104, IL_1FJG_058, IL_4M4O_002, IL_1U9S_007, IL_4IOA_091, IL_4NVV_019, IL_3U5H_049, IL_2AW7_062IL_2QBG_040, IL_4A1C_001, IL_1S72_085, IL_3U5H_138, IL_4A1B_129, IL_3V2F_041, IL_2Y9B_001, IL_4IOA_037

Children motifs

Child motifCommon motif instancesOnly in IL_78141.1Only in the child motif
IL_83000.1
Compare
IL_3KTW_002, IL_1FJG_010, IL_2AW7_052, IL_1NLC_002, IL_1T0E_002, IL_1NLC_001, IL_1U6B_001, IL_4A1B_115, IL_3U5F_041, IL_4A1B_052, IL_1O9M_004, IL_4JK0_004, IL_4IOA_078, IL_4J5V_003, IL_4J5V_002, IL_4J5V_001, IL_2QBG_020, IL_4J5V_006, IL_4J5V_005, IL_3SZX_001, IL_3U5H_076, IL_1VW3_068, IL_157D_002, IL_157D_001, IL_1ZH5_001, IL_2FQN_001, IL_1YZ9_002, IL_2FQN_004, IL_2QBG_096, IL_4BPP_015, IL_4BPP_068, IL_4E59_001, IL_4IOA_044, IL_4A1B_048, IL_2QBG_018, IL_1VW3_079, IL_2O3X_004, IL_4A1B_041, IL_1Z7F_002, IL_1FJG_056, IL_3U5F_050, IL_1Z7F_001, IL_4A1B_112, IL_3BNL_004, IL_3SYW_001, IL_3BNL_001, IL_3TD1_006, IL_4E48_005, IL_4E48_004, IL_4E48_006, IL_4E48_001, IL_4E48_003, IL_4E48_002, IL_3CUN_002, IL_3FO4_001, IL_4BPP_002, IL_1XJR_003, IL_4BPP_001, IL_2QBG_083, IL_4IOA_054, IL_3U5F_082, IL_3TD0_006, IL_1VW3_009, IL_3U5H_028, IL_2QEK_002, IL_2QEK_001, IL_4A1B_071, IL_3U5F_043, IL_1VW3_001, IL_1ZEV_004, IL_1ZEV_005, IL_1ZEV_006, IL_4FNJ_001, IL_1ZEV_001, IL_1ZEV_002, IL_1ZEV_003, IL_4JK0_002, IL_4JK0_001, IL_4NVV_067, IL_4JK0_005, IL_2O3V_001, IL_3U5H_087, IL_4K31_003, IL_1S72_047, IL_4BPP_073, IL_4BPP_070, IL_3NJ7_002, IL_4K31_002, IL_4K31_001, IL_2Q1R_002, IL_4BPP_079, IL_4K31_004, IL_4IOA_104, IL_4A1B_061, IL_4J5V_007, IL_1VW3_016, IL_1MFQ_002, IL_4IOA_109, IL_4IOA_025, IL_4KYY_001, IL_4BPP_088, IL_4NGF_002, IL_4NVV_055, IL_4BPP_082, IL_4BPP_083, IL_1KFO_003, IL_1KFO_002, IL_3U5F_034, IL_3U5F_036, IL_1VW3_092, IL_3UMY_001, IL_5MSF_001, IL_1ZX7_002, IL_4A1C_009, IL_3BNP_004, IL_1FJG_062, IL_3U5F_084, IL_3U5F_087, IL_3U5H_149, IL_4A1B_013, IL_3TD1_001, IL_1VW3_015, IL_4IOA_030, IL_3BNQ_001, IL_3U5F_089, IL_1MFQ_003, IL_3BNQ_006, IL_3U5H_017, IL_4NVV_043, IL_3BNP_001, IL_3D0U_006, IL_2QBG_065, IL_3U5F_002, IL_3BNT_006, IL_3BNT_001, IL_4BPP_034, IL_2O3V_004, IL_3IVK_004, IL_405D_002, IL_1MWL_004, IL_405D_001, IL_1MWL_001, IL_1T0D_002, IL_4KYY_003, IL_1UN6_005, IL_3U5H_036, IL_2AW7_064, IL_2AW7_063, IL_1S72_095, IL_1VW3_031, IL_3RW6_004, IL_3U5H_133, IL_3DIR_006, IL_2ZKO_001, IL_3SYW_002, IL_3SYW_003, IL_3U5F_015, IL_2QBG_030, IL_4IOA_010, IL_3U5H_022, IL_3MEI_002, IL_4NVV_036, IL_1RPU_001, IL_4A1B_015, IL_1YZ9_001, IL_1FJG_006, IL_3U5H_008, IL_4A1B_034, IL_4NVV_093, IL_4IOA_013, IL_3RG5_001, IL_3U5H_128, IL_2OE5_001, IL_4IOA_019, IL_3U5H_121, IL_4M6D_011, IL_1VW3_043, IL_1S72_024, IL_3U5F_063, IL_3U5F_061, IL_2Q1R_001, IL_1FJG_044, IL_1VW3_049, IL_4BPP_058, IL_3SZX_002, IL_3SZX_003, IL_3GLP_002, IL_3NJ6_002, IL_3NJ6_001, IL_3GLP_001, IL_4FNJ_002, IL_4A1B_083, IL_3TD0_005, IL_4NVV_083, IL_1U6B_005, IL_3TD0_001, IL_4BPP_056, IL_1ZX7_008, IL_3TD0_002, IL_4A1B_027, IL_4A1B_024, IL_4M4O_001, IL_4BPP_037, IL_4BPP_038, IL_1MZP_001, IL_4NVV_016, IL_3U5H_114, IL_4AOB_005, IL_3U5H_116, IL_3U5H_118, IL_3U5F_074, IL_3U5H_051, IL_2QBG_034, IL_4A1B_028, IL_3U5F_072, IL_4KYY_002, IL_3U5H_044, IL_4A1B_104, IL_1FJG_058, IL_4M4O_002, IL_1U9S_007, IL_4IOA_091, IL_4NVV_019, IL_3U5H_049, IL_2AW7_062IL_3LOA_003, IL_2QBG_085, IL_1O9M_003IL_4CUV_026, IL_4CUV_020, IL_4CUV_047, IL_4CUX_091, IL_4CUV_049, IL_1S72_062, IL_4CUX_069, IL_4CUX_022, IL_4CUX_023, IL_3U5F_023, IL_4KNQ_001, IL_4KNQ_002, IL_4CUV_030, IL_4KNQ_004, IL_4KNQ_005, IL_4CUX_003, IL_4CUX_040, IL_4CUX_044, IL_4CUV_139, IL_4CUV_133, IL_4CUV_032, IL_4CUX_083, IL_4CUV_118, IL_4CUX_089, IL_4CUV_156, IL_4CUV_074, IL_4CUV_039, IL_4CUX_073, IL_4CUV_052, IL_4CUV_086, IL_4CUX_034, IL_4CUX_015, IL_4CUV_008, IL_4CUV_120, IL_4CUV_122
IL_67813.2
Compare
IL_3LOA_003, IL_2QBG_085, IL_1O9M_003IL_3KTW_002, IL_1FJG_010, IL_2AW7_052, IL_1NLC_002, IL_1T0E_002, IL_1NLC_001, IL_1U6B_001, IL_4A1B_115, IL_3U5F_041, IL_4A1B_052, IL_1O9M_004, IL_4JK0_004, IL_4IOA_078, IL_4J5V_003, IL_4J5V_002, IL_4J5V_001, IL_2QBG_020, IL_4J5V_006, IL_4J5V_005, IL_3SZX_001, IL_3U5H_076, IL_1VW3_068, IL_157D_002, IL_157D_001, IL_1ZH5_001, IL_2FQN_001, IL_1YZ9_002, IL_2FQN_004, IL_2QBG_096, IL_4BPP_015, IL_4BPP_068, IL_4E59_001, IL_4IOA_044, IL_4A1B_048, IL_2QBG_018, IL_1VW3_079, IL_2O3X_004, IL_4A1B_041, IL_1Z7F_002, IL_1FJG_056, IL_3U5F_050, IL_1Z7F_001, IL_4A1B_112, IL_3BNL_004, IL_3SYW_001, IL_3BNL_001, IL_3TD1_006, IL_4E48_005, IL_4E48_004, IL_4E48_006, IL_4E48_001, IL_4E48_003, IL_4E48_002, IL_3CUN_002, IL_3FO4_001, IL_4BPP_002, IL_1XJR_003, IL_4BPP_001, IL_2QBG_083, IL_4IOA_054, IL_3U5F_082, IL_3TD0_006, IL_1VW3_009, IL_3U5H_028, IL_2QEK_002, IL_2QEK_001, IL_4A1B_071, IL_3U5F_043, IL_1VW3_001, IL_1ZEV_004, IL_1ZEV_005, IL_1ZEV_006, IL_4FNJ_001, IL_1ZEV_001, IL_1ZEV_002, IL_1ZEV_003, IL_4JK0_002, IL_4JK0_001, IL_4NVV_067, IL_4JK0_005, IL_2O3V_001, IL_3U5H_087, IL_4K31_003, IL_1S72_047, IL_4BPP_073, IL_4BPP_070, IL_3NJ7_002, IL_4K31_002, IL_4K31_001, IL_2Q1R_002, IL_4BPP_079, IL_4K31_004, IL_4IOA_104, IL_4A1B_061, IL_4J5V_007, IL_1VW3_016, IL_1MFQ_002, IL_4IOA_109, IL_4IOA_025, IL_4KYY_001, IL_4BPP_088, IL_4NGF_002, IL_4NVV_055, IL_4BPP_082, IL_4BPP_083, IL_1KFO_003, IL_1KFO_002, IL_3U5F_034, IL_3U5F_036, IL_1VW3_092, IL_3UMY_001, IL_5MSF_001, IL_1ZX7_002, IL_4A1C_009, IL_3BNP_004, IL_1FJG_062, IL_3U5F_084, IL_3U5F_087, IL_3U5H_149, IL_4A1B_013, IL_3TD1_001, IL_1VW3_015, IL_4IOA_030, IL_3BNQ_001, IL_3U5F_089, IL_1MFQ_003, IL_3BNQ_006, IL_3U5H_017, IL_4NVV_043, IL_3BNP_001, IL_3D0U_006, IL_2QBG_065, IL_3U5F_002, IL_3BNT_006, IL_3BNT_001, IL_4BPP_034, IL_2O3V_004, IL_3IVK_004, IL_405D_002, IL_1MWL_004, IL_405D_001, IL_1MWL_001, IL_1T0D_002, IL_4KYY_003, IL_1UN6_005, IL_3U5H_036, IL_2AW7_064, IL_2AW7_063, IL_1S72_095, IL_1VW3_031, IL_3RW6_004, IL_3U5H_133, IL_3DIR_006, IL_2ZKO_001, IL_3SYW_002, IL_3SYW_003, IL_3U5F_015, IL_2QBG_030, IL_4IOA_010, IL_3U5H_022, IL_3MEI_002, IL_4NVV_036, IL_1RPU_001, IL_4A1B_015, IL_1YZ9_001, IL_1FJG_006, IL_3U5H_008, IL_4A1B_034, IL_4NVV_093, IL_4IOA_013, IL_3RG5_001, IL_3U5H_128, IL_2OE5_001, IL_4IOA_019, IL_3U5H_121, IL_4M6D_011, IL_1VW3_043, IL_1S72_024, IL_3U5F_063, IL_3U5F_061, IL_2Q1R_001, IL_1FJG_044, IL_1VW3_049, IL_4BPP_058, IL_3SZX_002, IL_3SZX_003, IL_3GLP_002, IL_3NJ6_002, IL_3NJ6_001, IL_3GLP_001, IL_4FNJ_002, IL_4A1B_083, IL_3TD0_005, IL_4NVV_083, IL_1U6B_005, IL_3TD0_001, IL_4BPP_056, IL_1ZX7_008, IL_3TD0_002, IL_4A1B_027, IL_4A1B_024, IL_4M4O_001, IL_4BPP_037, IL_4BPP_038, IL_1MZP_001, IL_4NVV_016, IL_3U5H_114, IL_4AOB_005, IL_3U5H_116, IL_3U5H_118, IL_3U5F_074, IL_3U5H_051, IL_2QBG_034, IL_4A1B_028, IL_3U5F_072, IL_4KYY_002, IL_3U5H_044, IL_4A1B_104, IL_1FJG_058, IL_4M4O_002, IL_1U9S_007, IL_4IOA_091, IL_4NVV_019, IL_3U5H_049, IL_2AW7_062IL_2AW7_049, IL_1S72_046, IL_4NVV_044, IL_3U5H_062, IL_3U5F_093, IL_4IOA_043, IL_2QBG_045, IL_4CUV_064, IL_3U5H_052, IL_3U5F_065, IL_4NVV_032, IL_3U5F_067, IL_4BPP_065, IL_1FJG_041, IL_1VW3_035, IL_1VW3_070
Annotations
  • (164)
  • Isolated non-canonical cWW (51)
  • Isolated non-canonical cWW (H) (9)
  • Isolated non-canonical cWW with bulges (H) (2)
  • Isolated non-canonical cWW with bulges (1)
  • Decoding loop with one bulged A (1)
  • Basepair signature
    cWW-cWW-cWW
    Heat map statistics
    Min 0.00 | Avg 0.45 | Max 1.24
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