1U9S Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_1U9S_001 | 1/A/84:90 | GNRA | ||
| HL_1U9S_002 | 1/A/99:104 | GNRA | ||
| HL_1U9S_003 | 1/A/181:189 | GNRA wlth tandem sheared | geometric HL_3HHN_010 HL_68642.1 | |
| HL_1U9S_004 | 1/A/204:209 | GNRA |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_1U9S_001 | 1/A/95:96, 1/A/107:109 | Single bulged A | ||
| IL_1U9S_002 | 1/A/111:115, 1/A/228:229 | Major groove intercalation | ||
| IL_1U9S_003 | 1/A/116:117, 1/A/224:227 | Major groove intercalation | ||
| IL_1U9S_004 | 1/A/133:134, 1/A/164:167 | Major groove minor groove platform; mini C-loop | ||
| IL_1U9S_005 | 1/A/136:139, 1/A/161:162 | Minor groove platform, major groove intercalation | ||
| IL_1U9S_006 | 1/A/140:141, 1/A/158:160 | Major groove intercalation | ||
| IL_1U9S_007 | 1/A/177:179, 1/A/191:193 | Isolated non-canonical cWW pair | ||
| IL_1U9S_008 | 1/A/195:196, 1/A/217:219 | Stack outside cWW |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J4_1U9S_001 | 1/A/79:80, 1/A/94:95, 1/A/109:110, 1/A/230:231 | RNase P junction | ||
| J4_1U9S_002 | 1/A/119:132, 1/A/168:176, 1/A/194:195, 1/A/219:222 | RNase P junction | ||
| J4_1U9S_003 | 1/A/119:132, 1/A/168:176, 1/A/194:196, 1/A/217:222 | RNase P junction |
Problematic loops
No problematic loops
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