Description:
C-loop
Basepair signature:
cWW-tWH-cSH-L-cWS-cWW
Free text annotation:
No annotation provided yet.
Intraclusteral linkage
Min 0.08 | Avg 0.39 | Max 0.98
Help
#D - ordering by discrepancy relative to the exemplar, #S - ordering by similarity (same as in the heat map). More
#D#SLoop idPDBDiscBulges 1 2 3 4 5break 6 71-31-72-32-42-52-62-73-74-64-75-65-7
1173JAM0.00002U1615C1616C1617C1618U1619*A1156A1159ncSHcWWcSHtWHcWScWW
2184V880.10172U1617C1618C1619C1620U1621*A1157A1160ncSHcWWcSHcSHtWHcWScWW
3194BTS0.11871U1589C1590C1591C1592U1593*A1130A1132ncSHcWWcSHtWHcWScWW
4211KOG0.12721C96C97A98C99U100*A74G76cSHcWWcSHtWHncWScWW
5201KOG0.12721C96C97A98C99U100*A74G76cSHcWWcSHtWHncWScWW
6165A2Q0.13282U1681C1682C1683C1684U1685*A1214A1217ncSHcWWncSHncSHtWHncWScWW
7125J7L0.13541U2680C2681A2682C2683U2684*A2725A2727ncSHcWWcSHtWHcWScWW
8223J7P0.17622U1681C1682C1683C1684U1685*A1214A1217ncSHcWWncSHncSHtWHncWScWW
9115FDU0.17711C2692C2693U2694C2695U2696*A2738G2740cWWcSHtWHntHSncWScWW
10105B2Q0.19851C76C77U78C79U80*A88G90cWWcSHtWHntHSncWScWW
11144JRC0.20281C29C30U31C32U33*A73G75ncSHcWWcSHntWHntHSncWScWW
12134IOA0.20341C2659C2660G2661C2662U2663*A2705G2707cWWcSHtWHntHSncWScWW
13154MGN0.20491C29C30U31C32U33*A73G75ncSHcWWcSHntWHntHSncWScWW
1465J7L0.22632G864C865A866C867U868*A909C912cWWcSHtWHcWScWW
1593J9W0.22681C2709C2710G2711C2712U2713*A2754G2756cWWncSHtWHcWW
16294IOA0.25182G877C878A879C880U881*A921C924tSWcWWcSHtWHcWScWW
17305FDU0.25952G911C912A913C914U915*A955C958tSWcWWncSHtWHcWScWW
1854V9F0.26321G1425C1426A1427C1428U1429*A1437C1439cWWcSHtWHcWScWW
19244V910.30853G999C1000A1002A1003U1004*A1046C1049cWWncSHtWHncWWcWScWW
20254V880.31303G999C1000A1002A1003U1004*A1046C1049cWWncSHtWHncWWcWScWW
21355AJ30.31720G190C191C192A193U194*A208C209cWWtWHcWScWW
2284V9F0.31771C2717C2718A2719C2720U2721*A2761G2763cWWcSHtWHntHSncWScWW
23343J9M0.32170G834C835A836A837U838*A852C853cWWncSHtWHcWScWW
24274V8P0.32233G1025C1026A1028A1029U1030*A1072C1075ntSWcWWtWHcWScWWncWS
25331FJG0.33880G371C372A373A374U375*A389C390cWWncSHntWHcWScWW
26265AJ00.34663G1721C1722A1724A1725U1726*A1768C1771cWWncSHtWHcWScWW
2774V190.34861C1481C1482A1483A1484C1485*G1495G1497cWWncSHntSWtWHntHScWScWW
28314V4Q0.35360A371C372A373A374U375*A389U390ncSHcWWncSHntWHcWScWW
29233J790.35833G1121A1122A1124A1125U1126*A1169C1172ntSWcWWncSHntWHncWWcWScWW
30323J9W0.37650G379C380A381A382U383*A397C398cWWcSHtWHncWWcWScWW
31363J7P0.37830C491C492A493C494U495*A508G509cSHcWWntWHncWScWW
32283J7P0.38013G1739C1740A1742A1743U1744*A1786C1789ntSWcWWncSHtWHcWScWW
3323J7P0.38281U2415G2416A2417A2418C2419*G2427A2429ncSHcWWntSHcWScWW
3434IOA0.40921G1332G1333A1334A1335G1336*C1344C1346ncSHcWWcWScWW
3543J9W0.41901G1358G1359A1360A1361G1362*C1370C1372ncSHcWWncSHcWScWW
3615AN90.50492U3383C3384A3385C3386U3387*A3427A3430cWWntHHncWScWScWW
37374V8P0.55050U52U53A54A55G56*C26A27ncSHcWWncWWncHSncWS
38381FJG0.86620C1128C1129A1130G1131C1132*G1142G1143ncSHcWWncWScWW

3D structures

Complete motif including flanking bases
SequenceCounts
GCGAAU*AAAC5
UCCCU*ACCA4
CCUCU*ACG3
GCAAU*AC3
GCACU*AAAC3
GGAAG*CGC2
CCGCU*AUG2
CCACU*AUG2
CCAGC*GG1
CCACU*AG1
UGAAC*GAA1
GAUAAU*AAAC1
UUAAG*CA1
UCACU*ACCA1
GCCAU*AC1
UCACU*AAA1
UCCCU*ACA1
CCUCU*AUG1
GCACU*AGC1
CCAAC*GCG1
CCACU*ACG1
ACAAU*AU1
Non-Watson-Crick part of the motif
SequenceCounts
CGAA*AA5
CCC*CC4
CAA*4
CAC*AA3
CUC*C3
GAA*G2
CGC*U2
CAC*U2
CAG*1
CAC*1
GAA*A1
AUAA*AA1
UAA*1
CAC*CC1
CCA*1
CAC*A1
CCC*C1
CUC*U1
CAC*G1
CAC*C1
CAA*C1

Release history

Release2.0
Date2017-04-24
StatusNew id, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Mutual discrepancy heat map legend: