IL_42675.1

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name for chain		1		2		3		4		5	break		6		7	1-3	1-7	2-3	2-4	2-5	2-6	3-7	4-7	5-6
1	IL_5AN9_048	5AN9	0.5049	2	Major groove minor groove platform with tHH (H)	N	LSU rRNA	U	3383	C	3384	A	3385	C	3386	U	3387	*	A	3427	A	3430		cWW				ntHH		ncWS	cWW
2	IL_3J7P_081	3J7P	0.3828	1		5	LSU rRNA	U	2415	G	2416	A	2417	A	2418	C	2419	*	G	2427	A	2429		cWW						cWS	cWW
3	IL_4IOA_049	4IOA	0.4092	1	C-loop	X	LSU rRNA	G	1332	G	1333	A	1334	A	1335	G	1336	*	C	1344	C	1346		cWW						cWS	cWW
4	IL_3J9W_115	3J9W	0.4190	1	C-loop (H)	BA	LSU rRNA	G	1358	G	1359	A	1360	A	1361	G	1362	*	C	1370	C	1372		cWW						cWS	cWW
5	IL_4V9F_051	4V9F	0.2632	1	C-loop	0	LSU rRNA	G	1425	C	1426	A	1427	C	1428	U	1429	*	A	1437	C	1439		cWW		cSH		tWH		cWS	cWW
6	IL_5J7L_272	5J7L	0.2263	2	C-loop with bulged stacked A's	DA	LSU rRNA	G	864	C	865	A	866	C	867	U	868	*	A	909	C	912		cWW		cSH		tWH		cWS	cWW
7	IL_4V19_055	4V19	0.3486	1		A	LSU rRNA	C	1481	C	1482	A	1483	A	1484	C	1485	*	G	1495	G	1497		cWW			ntSW	tWH		cWS	cWW
8	IL_4V9F_093	4V9F	0.3177	1	C-loop	0	LSU rRNA	C	2717	C	2718	A	2719	C	2720	U	2721	*	A	2761	G	2763		cWW		cSH		tWH		cWS	cWW
9	IL_3J9W_172	3J9W	0.2268	1	C-loop (H)	BA	LSU rRNA	C	2709	C	2710	G	2711	C	2712	U	2713	*	A	2754	G	2756		cWW		ncSH		ntWH		ncWS	cWW
10	IL_5B2Q_003	5B2Q	0.1985	1		B	Guide RNA	C	76	C	77	U	78	C	79	U	80	*	A	88	G	90		cWW		cSH		tWH	tHS	cWS	cWW
11	IL_5FDU_105	5FDU	0.1771	1	C-loop (H)	1A	LSU rRNA	C	2692	C	2693	U	2694	C	2695	U	2696	*	A	2738	G	2740		cWW		cSH		tWH	ntHS	cWS	cWW
12	IL_5J7L_347	5J7L	0.1354	1	C-loop	DA	LSU rRNA	U	2680	C	2681	A	2682	C	2683	U	2684	*	A	2725	A	2727	ncSH	cWW		cSH		tWH		cWS	cWW
13	IL_4IOA_097	4IOA	0.2034	1	C-loop	X	LSU rRNA	C	2659	C	2660	G	2661	C	2662	U	2663	*	A	2705	G	2707		cWW		cSH		tWH		cWS	cWW
14	IL_4JRC_003	4JRC	0.2028	1	C-loop	B	Distal Stem I region of the glyQS T box leader RNA	C	29	C	30	U	31	C	32	U	33	*	A	73	G	75		cWW		cSH		tWH	tHS	cWS	cWW
15	IL_4MGN_001	4MGN	0.2049	1	C-loop	A	glyQS T box riboswitch	C	29	C	30	U	31	C	32	U	33	*	A	73	G	75		cWW		ncSH		ntWH	ntHS	cWS	cWW
16	IL_5A2Q_059	5A2Q	0.1328	2	C-loop (H)	2	SSU rRNA	U	1681	C	1682	C	1683	C	1684	U	1685	*	A	1214	A	1217	ncSH	cWW	ncSH	cSH		tWH		ncWS	cWW
17	IL_3JAM_054	3JAM	0.0000	2	C-loop (H)	2	SSU rRNA	U	1615	C	1616	C	1617	C	1618	U	1619	*	A	1156	A	1159	cSH	cWW		cSH		tWH		cWS	cWW
18	IL_4V88_443	4V88	0.1017	2	C-loop	A6	SSU rRNA	U	1617	C	1618	C	1619	C	1620	U	1621	*	A	1157	A	1160	ncSH	cWW		ncSH		tWH		cWS	cWW
19	IL_4BTS_317	4BTS	0.1187	1	C-loop (H)	DA	SSU rRNA	U	1589	C	1590	C	1591	C	1592	U	1593	*	A	1130	A	1132	cSH	cWW		ncSH		tWH		cWS	cWW
20	IL_1KOG_008	1KOG	0.1272	1		P	Threonyl-tRNA synthetase mRNA	C	96	C	97	A	98	C	99	U	100	*	A	74	G	76	ncSH	cWW		cSH		tWH		cWS	cWW
21	IL_1KOG_010	1KOG	0.1272	1		P	Threonyl-tRNA synthetase mRNA	C	96\|\|\|\|2_656	C	97\|\|\|\|2_656	A	98\|\|\|\|2_656	C	99\|\|\|\|2_656	U	100\|\|\|\|2_656	*	A	74\|\|\|\|2_656	G	76\|\|\|\|2_656	ncSH	cWW		cSH		tWH		cWS	cWW
22	IL_3J7P_208	3J7P	0.1762	2	C-loop (H)	S2	SSU rRNA	U	1681	C	1682	C	1683	C	1684	U	1685	*	A	1214	A	1217	cSH	cWW		ncSH		tWH		cWS	cWW
23	IL_3J79_041	3J79	0.3583	3	C-loop (H)	A	LSU rRNA	G	1121	A	1122	A	1124	A	1125	U	1126	*	A	1169	C	1172		cWW						cWS	cWW
24	IL_4V91_044	4V91	0.3085	3	C-loop (H)	1	LSU rRNA	G	999	C	1000	A	1002	A	1003	U	1004	*	A	1046	C	1049		cWW				ntWH		cWS	cWW
25	IL_4V88_283	4V88	0.3130	3	C-loop (H)	A5	LSU rRNA	G	999	C	1000	A	1002	A	1003	U	1004	*	A	1046	C	1049		cWW				tWH		cWS	cWW
26	IL_5AJ0_073	5AJ0	0.3466	3	C-loop (H)	A2	LSU rRNA	G	1721	C	1722	A	1724	A	1725	U	1726	*	A	1768	C	1771		cWW				tWH		cWS	cWW
27	IL_4V8P_348	4V8P	0.3223	3	C-loop (H)	F1	LSU rRNA	G	1025	C	1026	A	1028	A	1029	U	1030	*	A	1072	C	1075		ncWW				tWH		cWS	cWW
28	IL_3J7P_058	3J7P	0.3801	3	C-loop with bulged stacked A's (H)	5	LSU rRNA	G	1739	C	1740	A	1742	A	1743	U	1744	*	A	1786	C	1789	ntSW	cWW				tWH			ncWW
29	IL_4IOA_028	4IOA	0.2518	2	C-loop	X	LSU rRNA	G	877	C	878	A	879	C	880	U	881	*	A	921	C	924	tSW	cWW		cSH		tWH		cWS	cWW
30	IL_5FDU_029	5FDU	0.2595	2	C-loop (H)	1A	LSU rRNA	G	911	C	912	A	913	C	914	U	915	*	A	955	C	958	tSW	cWW		cSH		tWH		cWS	cWW
31	IL_4V4Q_195	4V4Q	0.3536	0		CA	SSU rRNA	A	371	C	372	A	373	A	374	U	375	*	A	389	U	390	cSH	cWW				ntWH		cWS	cWW
32	IL_3J9W_014	3J9W	0.3765	0		AA	SSU rRNA	G	379	C	380	A	381	A	382	U	383	*	A	397	C	398		cWW				tWH		cWS	cWW
33	IL_1FJG_015	1FJG	0.3388	0	C-loop (H)	A	SSU rRNA	G	371	C	372	A	373	A	374	U	375	*	A	389	C	390		cWW				tWH		cWS	cWW
34	IL_3J9M_072	3J9M	0.3217	0		AA	SSU rRNA	G	834	C	835	A	836	A	837	U	838	*	A	852	C	853		cWW				tWH		cWS	cWW
35	IL_5AJ3_011	5AJ3	0.3172	0		A	SSU rRNA	G	190	C	191	C	192	A	193	U	194	*	A	208	C	209		cWW				ntWH		cWS	cWW
36	IL_3J7P_178	3J7P	0.3783	0		S2	SSU rRNA	C	491	C	492	A	493	C	494	U	495	*	A	508	G	509	ncSH	cWW				ntWH			cWW
37	IL_4V8P_442	4V8P	0.5505	0		G3	5S rRNA	U	52	U	53	A	54	A	55	G	56	*	C	26	A	27	ncSH	cWW				ncWW			cWS
38	IL_1FJG_047	1FJG	0.8662	0	Minor groove platform (H)	A	SSU rRNA	C	1128	C	1129	A	1130	G	1131	C	1132	*	G	1142	G	1143	ncSH	cWW						ncWS	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GCGAAU*AAAC	5
UCCCU*ACCA	4
GCACU*AAAC	3
CCUCU*ACG	3
GCAAU*AC	3
GGAAG*CGC	2
CCGCU*AUG	2
CCACU*AUG	2
UCACU*ACCA	1
UGAAC*GAA	1
GCACU*AGC	1
CCAAC*GCG	1
CCACU*ACG	1
CCUCU*AUG	1
UCACU*AAA	1
UCCCU*ACA	1
GAUAAU*AAAC	1
ACAAU*AU	1
GCCAU*AC	1
CCACU*AG	1
UUAAG*CA	1
CCAGC*GG	1

Non-Watson-Crick part of the motif

Sequence	Counts
CGAA*AA	5
CCC*CC	4
CAA*	4
CAC*AA	3
CUC*C	3
GAA*G	2
CGC*U	2
CAC*U	2
CAC*CC	1
GAA*A	1
CAC*G	1
CAA*C	1
CAC*C	1
CUC*U	1
CAC*A	1
CCC*C	1
AUAA*AA	1
CCA*	1
CAC*	1
UAA*	1
CAG*	1

Release history

Release	2.0
Date	2017-04-24
Status	New id, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Motif IL_42675.1 Version IL_42675.1 of this group appears in releases 2.0 to 2.0 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_42675.1 Version IL_42675.1 of this group appears in releases 2.0 to 2.0

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Csv

Json