Motif IL_85647.1 Version IL_85647.1 of this group appears in releases 0.6 to 0.6

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4		5		6		7		8	break		9		10		11		12		13		14		15	1-15	2-14	3-13	4-12	5-6	6-11	7-10	8-9
1	IL_3UXR_006	3UXR	0.2223	0		A	23S ribosomal RNA	C	201	U	202	C	203	A	204	G	205	U	206	A	207	C	208	*	G	188	G	189	A	190	A	191	C	192	U	193	G	194	cWW	cwW	tSH	tHH	cSH	tWH	tHS	cWW
2	IL_3UXR_046	3UXR	0.2281	0		A	23S ribosomal RNA	A	1262	U	1263	G	1264	A	1265	G	1266	U	1267	A	1268	A	1269	*	U	2011	G	2012	A	2013	A	2014	A	2015	U	2016	U	2017	cWW	cwW	tSH	tHH	cSH	tWH	tHS	cWW
3	IL_2QBG_048	2QBG	0.2095	0		B	23S rRNA	A	1262	U	1263	A	1264	A	1265	G	1266	U	1267	A	1268	A	1269	*	U	2011	G	2012	A	2013	A	2014	A	2015	U	2016	U	2017	cWW	cwW	tSH	tHH	cSH	tWH	tHS	cWW
4	IL_1Q96_001	1Q96	0.1501	0	8x7 Sarcin-Ricin; G-bulge	A	sarcin/ricin 28S rRNA	C	6	U	7	C	8	A	9	G	10	U	11	A	12	U	13	*	A	18	G	19	A	20	A	21	C	22	C	23	G	24	cWW		tSH		cSH	tWH	tHS	cWW
5	IL_4A1C_008	4A1C	0.0718	0		3	5S RRNA	G	71	U	72	U	73	A	74	G	75	U	76	A	77	C	78	*	G	98	G	99	A	100	A	101	G	102	U	103	C	104	cWW			tHH	ncSH	tWH	tHS	cWW
6	IL_1JBR_002	1JBR	0.0000	0		D	31-mer SRD RNA analog	C	6	U	7	C	8	A	9	G	10	U	11	A	12	C	13	*	G	18	G	19	A	20	A	21	C	22	C	23	G	24	cWW		tSH	tHH	cSH	tWH	tHS	cWW
7	IL_1S72_006	1S72	0.0811	0		0	LSU rRNA	C	171	U	172	C	173	A	174	G	175	U	176	A	177	U	178	*	A	158	G	159	A	160	A	161	C	162	U	163	G	164	cWW	cwW	tSH	tHH	cSH	tWH	tHS	cWW
8	IL_2ZJR_007	2ZJR	0.0972	0		X	LSU rRNA	G	215	U	216	U	217	A	218	G	219	U	220	A	221	G	222	*	C	230	G	231	A	232	A	233	C	234	C	235	C	236	cWW		tSH	ntHH	cSH	tWH	tHS	cWW
9	IL_4A1B_118	4A1B	0.1295	0		1	26S RRNA	G	3007	U	3008	U	3009	A	3010	G	3011	U	3012	A	3013	C	3014	*	G	3019	G	3020	A	3021	A	3022	C	3023	A	3024	C	3025	cWW		ntSH	tHH		tWH	tHS	cWW
10	IL_1Q96_003	1Q96	0.1808	0		C	sarcin/ricin 28S rRNA	C	6	U	7	C	8	A	9	G	10	U	11	A	12	U	13	*	A	18	G	19	A	20\|\|A	A	21\|\|A	C	22\|\|A	C	23	G	24	cWW		tSH	tHH	cSH	tWH	tHS	cWW
11	IL_2ZJR_045	2ZJR	0.1844	0		X	LSU rRNA	A	1275	U	1276	G	1277	A	1278	G	1279	U	1280	A	1281	A	1282	*	U	1994	G	1995	A	1996	A	1997	A	1998	U	1999	U	2000	cWW	cwW	tSH		ncSH	tWH	tHS	cWW
12	IL_1Q96_002	1Q96	0.1784	0		B	sarcin/ricin 28S rRNA	C	6	U	7	C	8	A	9	G	10	U	11	A	12	U	13	*	A	18	G	19	A	20	A	21\|\|A	C	22\|\|A	C	23\|\|A	G	24	cWW		tSH	tHH	cSH		tHS	cWW
13	IL_2ZJR_006	2ZJR	0.1843	0		X	LSU rRNA	C	178	U	179	C	180	A	181	G	182	U	183	A	184	C	185	*	G	165	G	166	A	167	A	168	C	169	U	170	G	171	cWW	cwW			ncSH		tHS	cWW
14	IL_2QBG_011	2QBG	0.1983	0		B	23S rRNA	C	201	U	202	A	203	A	204	G	205	U	206	A	207	C	208	*	G	188	G	189	A	190	A	191	C	192	U	193	G	194	cWW	cwW	tSH	tHH	cSH	tWH	tHS	cWW
15	IL_4A1B_003	4A1B	0.2634	0		1	26S RRNA	C	80	C	81	C	82	A	83	G	84	U	85	A	86	A	87	*	U	95	G	96	A	97	A	98	C	99	A	100	G	101	cWW	ncWW	tSH	tHH	cSH	tWH	tHS	cWW
16	IL_3U5H_148	3U5H	0.2840	1		7	5S rRNA	A	72	C	74	G	75	A	76	G	77	U	78	A	79	G	80	*	C	100	G	101	A	102	A	103	A	104	C	105	U	106	cWW	cWw	tSH	tHH	cSH	tWH	tHS	cWW
17	IL_3U5H_122	3U5H	0.2701	0		5	25S rRNA	C	3018	U	3019	U	3020	A	3021	G	3022	U	3023	A	3024	C	3025	*	G	3030	G	3031	A	3032	A	3033	C	3034	A	3035	G	3036	cWW		tSH	tHH	cSH	tWH	tHS	cWW
18	IL_1JBR_001	1JBR	0.3310	0	8x7 Sarcin-Ricin; G-bulge	C+F	RNA (18-mer) + RNA (13-mer)	C	6	U	7	C	8	A	9	G	10	U	11	A	12	C	13	*	G	18	G	19	A	20	A	21	C	22	C	23	G	24	cWW		tSH	tHH	cSH	tWH	tHS	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CUCAGUAU*AGAACCG	3
AUGAGUAA*UGAAAUU	2
CUCAGUAC*GGAACCG	2
GGAACUG*CUCAGUAC	1
AUAAGUAA*UGAAAUU	1
GUUAGUAC*GGAAGUC	1
CUCAGUAU*AGAACUG	1
GUUAGUAG*CGAACCC	1
GUUAGUAC*GGAACAC	1
CUCAGUAC*GGAACUG	1
CUAAGUAC*GGAACUG	1
CCCAGUAA*UGAACAG	1
ACCGAGUAG*CGAAACU	1
CUUAGUAC*GGAACAG	1

Non-Watson-Crick part of the motif

Sequence	Counts
UCAGUA*GAACC	5
UGAGUA*GAAAU	2
UCAGUA*GAACU	2
UUAGUA*GAACA	2
GAACU*UCAGUA	1
UAAGUA*GAAAU	1
UUAGUA*GAAGU	1
UUAGUA*GAACC	1
UAAGUA*GAACU	1
CCAGUA*GAACA	1
CCGAGUA*GAAAC	1

Release history

Release	0.6
Date	2012-04-02
Status	> 2 parents

Parent motifs

Parent motif	Common motif instances	Only in IL_85647.1	Only in the parent motif
IL_07547.1 Compare	IL_1Q96_003, IL_1Q96_002, IL_1Q96_001, IL_2ZJR_007, IL_1JBR_001, IL_1JBR_002	IL_3UXR_006, IL_2ZJR_045, IL_2QBG_048, IL_3UXR_046, IL_4A1C_008, IL_2ZJR_006, IL_1S72_006, IL_3U5H_148, IL_4A1B_003, IL_2QBG_011, IL_4A1B_118, IL_3U5H_122
IL_55276.1 Compare	IL_2QBG_011, IL_2QBG_048, IL_1S72_006, IL_2ZJR_006	IL_3UXR_006, IL_2ZJR_045, IL_1Q96_003, IL_1JBR_002, IL_3UXR_046, IL_4A1C_008, IL_1Q96_001, IL_1Q96_002, IL_3U5H_148, IL_1JBR_001, IL_4A1B_003, IL_4A1B_118, IL_2ZJR_007, IL_3U5H_122	IL_3PYO_045, IL_3PYO_006
IL_40287.1 Compare	IL_2ZJR_045	IL_3UXR_006, IL_3UXR_046, IL_2QBG_048, IL_1JBR_002, IL_1Q96_003, IL_4A1C_008, IL_1Q96_001, IL_1Q96_002, IL_3U5H_148, IL_1JBR_001, IL_1S72_006, IL_4A1B_003, IL_2QBG_011, IL_4A1B_118, IL_2ZJR_007, IL_2ZJR_006, IL_3U5H_122

Children motifs

Child motif	Common motif instances	Only in IL_85647.1	Only in the child motif
IL_85647.2 Compare	IL_2ZJR_045, IL_2QBG_048, IL_1Q96_003, IL_4A1C_008, IL_1Q96_001, IL_1S72_006, IL_3U5H_148, IL_1JBR_001, IL_2ZJR_006, IL_4A1B_003, IL_2QBG_011, IL_4A1B_118, IL_2ZJR_007, IL_3U5H_122	IL_3UXR_006, IL_3UXR_046, IL_1Q96_002, IL_1JBR_002	IL_3V2F_046, IL_3V2F_006

Annotations: 8x7 Sarcin-Ricin; G-bulge (2)
Basepair signature: 15_cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
Heat map statistics: Min 0.07 | Avg 0.22 | Max 0.39

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Coloring options: Nucleotide numbers

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