#D - ordering by discrepancy relative to the exemplar, #S - ordering by similarity (same as in the heat map). More
#D#SLoop idPDBDisc#Non-coreAnnotation 1 2 3 4 5 6 7 8break 9 10 11 12 13 14 151-152-143-134-54-125-66-116-127-108-9
713UXR0.22230 C201U202C203A204G205U206A207C208*G188G189A190A191C192U193G194cWWcWWtSHtHHcSHtWHtHScWW
1623UXR0.22810 A1262U1263G1264A1265G1266U1267A1268A1269*U2011G2012A2013A2014A2015U2016U2017cWWcWWtSHtHHcSHtWHtHScWW
1732QBG0.20950 A1262U1263A1264A1265G1266U1267A1268A1269*U2011G2012A2013A2014A2015U2016U2017cWWcWWtSHtHHcSHtWHtHScWW
341Q960.150108x7 Sarcin-Ricin; G-bulgeC6U7C8A9G10U11A12U13*A18G19A20A21C22C23G24cWWntSHtSHtHHcSHtWHtHScWW
1454A1C0.07180 G71U72U73A74G75U76A77C78*G98G99A100A101G102U103C104cWWntWHtHHcSHtWHtHScWW
161JBR0.00000 C6U7C8A9G10U11A12C13*G18G19A20A21C22C23G24cWWntSHtSHtHHcSHtWHtHScWW
971S720.08110 C171U172C173A174G175U176A177U178*A158G159A160A161C162U163G164cWWcWWntSHtHHcSHtWHtHScWW
1382ZJR0.09720 G215U216U217A218G219U220A221G222*C230G231A232A233C234C235C236cWWntSHntSHtHHcSHtWHtHScWW
1294A1B0.12950 G3007U3008U3009A3010G3011U3012A3013C3014*G3019G3020A3021A3022C3023A3024C3025cWWncSWntSHtHHncSHtWHtHScWW
5101Q960.18080 C6U7C8A9G10U11A12U13*A18G19A20A21C22C23G24cWWntSHtSHtHHcSHtWHtHScWW
18112ZJR0.18440 A1275U1276G1277A1278G1279U1280A1281A1282*U1994G1995A1996A1997A1998U1999U2000cWWcWWtSHncHSntSHncSHtWHtHScWW
4121Q960.17840 C6U7C8A9G10U11A12U13*A18G19A20A21C22C23G24cWWntSHtSHtHHcSHtWHtHScWW
11132ZJR0.18430 C178U179C180A181G182U183A184C185*G165G166A167A168C169U170G171cWWcWWtSHntHHcSHtWHntSHtHScWW
10142QBG0.19830 C201U202A203A204G205U206A207C208*G188G189A190A191C192U193G194cWWcWWtSHtHHcSHtWHtHScWW
8154A1B0.26340 C80C81C82A83G84U85A86A87*U95G96A97A98C99A100G101cWWtSHtHHcSHtWHtHScWW
15163U5H0.28401 A72C74G75A76G77U78A79G80*C100G101A102A103A104C105U106cWWncWWtSHtHHcSHtWHtHScWW
6173U5H0.27010 C3018U3019U3020A3021G3022U3023A3024C3025*G3030G3031A3032A3033C3034A3035G3036cWWntSHtSHtHHcSHtWHtHScWW
2181JBR0.331008x7 Sarcin-Ricin; G-bulgeC6U7C8A9G10U11A12C13*G18G19A20A21C22C23G24cWWntSHtSHtHHcSHtWHtHScWW

3D structures

Complete motif including flanking bases
SequenceCounts
CUCAGUAU*AGAACCG3
CUCAGUAC*GGAACCG2
AUGAGUAA*UGAAAUU2
CUAAGUAC*GGAACUG1
CCCAGUAA*UGAACAG1
ACCGAGUAG*CGAAACU1
CUUAGUAC*GGAACAG1
CUCAGUAC*GGAACUG1
CUCAGUAU*AGAACUG1
AUAAGUAA*UGAAAUU1
GUUAGUAC*GGAAGUC1
GGAACUG*CUCAGUAC1
GUUAGUAG*CGAACCC1
GUUAGUAC*GGAACAC1
Non-Watson-Crick part of the motif
SequenceCounts
UCAGUA*GAACC5
UUAGUA*GAACA2
UCAGUA*GAACU2
UGAGUA*GAAAU2
UAAGUA*GAACU1
CCGAGUA*GAAAC1
CCAGUA*GAACA1
UUAGUA*GAACC1
UUAGUA*GAAGU1
GAACU*UCAGUA1
UAAGUA*GAAAU1
Annotations
  • 8x7 Sarcin-Ricin; G-bulge (2)
  • Basepair signature
    15_cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
    Intraclusteral linkage
    Min 0.07 | Avg 0.22 | Max 0.39
    Help

    Coloring options:

    Mutual discrepancy heat map legend: