3J5S Internal, hairpin and 3-way junction loop motifs

Download loops

12 Internal loops
7 Hairpin loops
0 Junction loops

Valid loops

#	loop id	location	motif
1	IL_3J5S_001 ➜	1/A/1837:1840,1/A/1902:1903	NA
2	IL_3J5S_002 ➜	1/A/1841:1842,1/A/1898:1901	NA
3	IL_3J5S_003 ➜	1/A/1846:1849,1/A/1893:1894	NA
4	IL_3J5S_004 ➜	1/A/1851:1860,1/A/1882:1891	NA
5	IL_3J5S_005 ➜	1/A/1864:1867,1/A/1874:1878	NA
6	IL_3J5S_006 ➜	1/A/2098:2100,1/A/2189:2191	NA
7	IL_3J5S_007 ➜	1/A/2103:2105,1/A/2184:2186	NA
8	IL_3J5S_008 ➜	1/A/2108:2110,1/A/2179:2181	NA
9	IL_3J5S_009 ➜	1/A/2110:2122,1/A/2176:2179	NA
10	IL_3J5S_010 ➜	1/A/2124:2127,1/A/2161:2174	NA
11	IL_3J5S_011 ➜	1/A/2127:2136,1/A/2155:2161	NA
12	IL_3J5S_012 ➜	1/A/2137:2141,1/A/2150:2154	NA

Problematic loops

No problematic loops

Valid loops

#	loop id	location	motif
1	HL_3J5S_003 ➜	1/A/1868:1873	NA
2	HL_3J5S_004 ➜	1/A/2143:2148	NA
3	HL_3J5S_005 ➜	1/E/13:23	NA
4	HL_3J5S_006 ➜	1/E/32:40	NA
5	HL_3J5S_007 ➜	1/E/54:62	NA

Problematic loops

#	loop id	Problem	Sequence
1	HL_3J5S_001 ➜	missing nts	1245, 1289, 1290, 1291, 1292
2	HL_3J5S_002 ➜	missing nts	1303, 1304, 1305, 1332, 1333, 1334

Valid loops

No loops found

Problematic loops

No problematic loops

Coloring options: Nucleotide numbers