3J5S Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_3J5S_003 | 1/A/1868:1873 | Other HL Not in a motif group | homologous HL_5J7L_180 HL_42097.1 | |
| HL_3J5S_004 | 1/A/2143:2148 | No text annotation Not in a motif group | ||
| HL_3J5S_005 | 1/E/13:23 | No text annotation Not in a motif group | homologous HL_4YYE_001 NA | |
| HL_3J5S_006 | 1/E/32:40 | No text annotation Not in a motif group | homologous HL_6CFJ_107 NA | |
| HL_3J5S_007 | 1/E/54:62 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_4TUE_035 HL_71309.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_3J5S_001 | No text annotation | ||
| HL_3J5S_002 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_3J5S_001 | 1/A/1837:1840, 1/A/1902:1903 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_5J7L_314 IL_88739.1 | |
| IL_3J5S_002 | 1/A/1841:1842, 1/A/1898:1901 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_5J7L_315 IL_16396.2 | |
| IL_3J5S_003 | 1/A/1846:1849, 1/A/1893:1894 | No text annotation Not in a motif group | homologous IL_4WF9_072 NA | |
| IL_3J5S_004 | 1/A/1851:1860, 1/A/1882:1891 | No text annotation Not in a motif group | ||
| IL_3J5S_005 | 1/A/1864:1867, 1/A/1874:1878 | UAA/GAN related Not in a motif group | homologous IL_5J7L_317 IL_77691.1 | |
| IL_3J5S_006 | 1/A/2098:2100, 1/A/2189:2191 | No text annotation Not in a motif group | geometric IL_6OL3_002 IL_95997.1 | |
| IL_3J5S_007 | 1/A/2103:2105, 1/A/2184:2186 | No text annotation Not in a motif group | geometric IL_3GM7_006 IL_95997.1 | |
| IL_3J5S_008 | 1/A/2108:2110, 1/A/2179:2181 | No text annotation Not in a motif group | homologous IL_3U4M_001 IL_95997.1 | |
| IL_3J5S_009 | 1/A/2110:2122, 1/A/2176:2179 | No text annotation Not in a motif group | ||
| IL_3J5S_010 | 1/A/2124:2127, 1/A/2161:2174 | No text annotation Not in a motif group | ||
| IL_3J5S_011 | 1/A/2127:2136, 1/A/2155:2161 | No text annotation Not in a motif group | ||
| IL_3J5S_012 | 1/A/2137:2141, 1/A/2150:2154 | No text annotation Not in a motif group | geometric IL_5TBW_121 IL_05145.2 |
Problematic loops
No problematic loops
Valid loops
No loops found
Problematic loops
No problematic loops
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