HL_22280.1

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)		1		2		3		4		5		6		7	1-7	2-6
1	HL_4WF9_019	4WF9	0.5286	2	Other HL	X	C	654	A	655	G	656	U	657	A	659	U	661	G	662	cWW
2	HL_4V9K_035	4V9K	0.3562	2	T-loop with 2 stacked bulged bases	AW	G	53	U	54	U	55	C	56	G	57	A	58	C	61	cWW	ntWH
3	HL_4V8N_145	4V8N	0.2210	2	T-loop with 2 stacked bulged bases	CV	G	55	U	56	U	57	C	58	G	59	A	60	C	63	cWW	tWH
4	HL_1GAX_006	1GAX	0.4828	2	T-loop with 2 stacked bulged bases	D	G	952	U	953	U	954	C	955	A	956	A	957	C	960	cWW	tWH
5	HL_2CSX_003	2CSX	0.2558	2	T-loop with 2 stacked bulged bases	C	G	53	U	54	U	55	C	56	G	57	A	58	C	61	cWW	tWH
6	HL_1J2B_002	1J2B	0.3106	2	T-loop with 2 stacked bulged bases	C	G	954	U	955	U	956	C	957	A	958	A	959	C	962	cWW	tWH
7	HL_2DRA_001	2DRA	0.2420	2	T-loop with 2 stacked bulged bases	B	G	12	U	13	U	14	C	15	G	16	A	17	C	20	cWW	tWH
8	HL_1WZ2_008	1WZ2	0.1955	2	T-loop with 2 stacked bulged bases	D	G	965	U	966	U	967	C	968	G	969	A	970	C	973	cWW	tWH
9	HL_3AMU_003	3AMU	0.1872	2	T-loop with 2 stacked bulged bases	B	G	53	U	54	U	55	C	56	G	57	A	58	C	61	cWW	tWH
10	HL_5B63_004	5B63	0.1854	2	T-loop with 2 stacked bulged bases	D	G	954	U	955	U	956	C	957	G	958	A	959	C	962	cWW	tWH
11	HL_2AZX_006	2AZX	0.1538	2	T-loop with 2 stacked bulged bases	D	G	553	U	554	U	555	C	556	G	557	A	558	C	561	ncWW	tWH
12	HL_6JXM_003	6JXM	0.1004	2	T-loop with 2 stacked bulged bases	B	G	74	U	75	U	76	C	77	G	78	A	79	C	82	cWW	tWH
13	HL_3RG5_008	3RG5	0.0934	2	T-loop with 2 stacked bulged bases	B	G	53	U	54	U	55	C	56	A	57	A	58	C	61	cWW	tWH
14	HL_8G9Z_004	8G9Z	0.1036	2	T-loop with 2 stacked bulged bases	E	G	53\|\|A	U	54\|\|A	U	55\|\|A	C	56\|\|A	A	57\|\|A	A	58\|\|A	C	61\|\|A	cWW	tWH
15	HL_3ZGZ_003	3ZGZ	0.0761	2	T-loop with 2 stacked bulged bases	B	G	53	U	54	U	55	C	56	A	57	A	58	C	61	cWW	tWH
16	HL_4LCK_003	4LCK	0.0000	2	T-loop with 2 stacked bulged bases	B	G	52	U	53	U	54	C	55	G	56	A	57	C	60	cWW	tWH
17	HL_4MGN_004	4MGN	0.0907	2	T-loop with 2 stacked bulged bases	B	G	52	U	53	U	54	C	55	G	56	A	57	C	60	cWW	tWH
18	HL_5WWT_002	5WWT	0.0994	2	T-loop with 2 stacked bulged bases	C	G	53	U	54	U	55	C	56	A	57	A	58	C	61	cWW	tWH
19	HL_3ADD_004	3ADD	0.0947	2	T-loop with 2 stacked bulged bases	C	G	53	U	54	U	55	C	56	A	57	A	58	C	61	cWW	tWH
20	HL_3W3S_004	3W3S	0.0903	2	T-loop with 2 stacked bulged bases	B	G	53	U	54	U	55	C	56	G	57	A	58	C	61	cWW	tWH
21	HL_3FOZ_006	3FOZ	0.1309	2	T-loop with 2 stacked bulged bases	D	G	53	U	54	U	55	C	56	G	57	A	58	C	61	cWW	tWH
22	HL_4X4V_001	4X4V	0.1153	2	T-loop with 2 stacked bulged bases	B	G	12	U	13	U	14	C	15	G	16	A	17	C	20	cWW	tWH
23	HL_2DU3_003	2DU3	0.1007	2	T-loop with 2 stacked bulged bases	D	G	952	U	953	U	954	C	955	G	956	A	957	C	960	cWW	tWH
24	HL_2DER_006	2DER	0.1424	2	T-loop with 2 stacked bulged bases	D	G	53	U	54	U	55	C	56	G	57	A	58	C	61	cWW	tWH
25	HL_4WJ4_003	4WJ4	0.1142	2	T-loop with 2 stacked bulged bases	B	G	53	U	54	U	55	C	56	G	57	A	58	C	61	cWW	tWH
26	HL_7LYF_003	7LYF	0.1130	2	T-loop with 2 stacked bulged bases	A	G	116	U	117	U	118	C	119	A	120	A	121	C	124	cWW	tWH
27	HL_2ZZN_006	2ZZN	0.1389	2	T-loop with 2 stacked bulged bases	D	G	53	U	54	U	55	C	56	A	57	A	58	C	61	cWW	tWH
28	HL_3WQY_003	3WQY	0.1154	2	T-loop with 2 stacked bulged bases	C	G	1653	U	1654	U	1655	C	1656	A	1657	A	1658	C	1661	cWW	tWH
29	HL_5AH5_008	5AH5	0.1276	2	T-loop with 2 stacked bulged bases	D	G	53	U	54	U	55	C	56	A	57	A	58	C	61	cWW	tWH
30	HL_2BTE_004	2BTE	0.1674	2	T-loop with 2 stacked bulged bases	B	G	53	U	54	U	55	C	56	A	57	A	58	C	61	cWW	tWH
31	HL_4JXZ_003	4JXZ	0.1435	2	T-loop with 2 stacked bulged bases	B	G	953	U	954	U	955	C	956	G	957	A	958	C	961	cWW	tWH
32	HL_1J1U_003	1J1U	0.1296	2	T-loop with 2 stacked bulged bases	B	G	554	U	555	U	556	C	557	A	558	A	559	C	562	cWW	tWH
33	HL_7MRL_003	7MRL	0.1282	2	T-loop with 2 stacked bulged bases	A	G	56	U	57	U	58	C	59	A	60	A	61	C	64	cWW	tWH
34	HL_4YCO_003	4YCO	0.1171	2	T-loop with 2 stacked bulged bases	D	G	53	U	54	U	55	C	56	G	57	A	58	C	61	cWW	tWH
35	HL_5AXM_003	5AXM	0.1426	2	T-loop with 2 stacked bulged bases	P	G	53	U	54	U	55	C	56	G	57	A	58	C	61	cWW	tWH
36	HL_6PMO_005	6PMO	0.1687	2	T-loop with 2 stacked bulged bases	B	G	53	U	54	U	55	C	56	G	57	A	58	C	61	cWW	tWH
37	HL_4V90_034	4V90	0.1461	2	T-loop with 2 stacked bulged bases	AV	G	53	U	54	U	55	C	56	G	57	A	58	C	61	cWW	tWH
38	HL_7E8O_003	7E8O	0.1181	2	T-loop with 2 stacked bulged bases	X	G	52	U	53	U	54	C	55	G	56	A	57	C	60	cWW	tWH
39	HL_1QTQ_003	1QTQ	0.1599	2	T-loop with 2 stacked bulged bases	B	G	953	U	954	U	955	C	956	G	957	A	958	C	961	cWW	tWH
40	HL_4YYE_003	4YYE	0.1344	2	T-loop with 2 stacked bulged bases	C	G	53	U	54	U	55	C	56	A	57	A	58	C	61	cWW	tWH
41	HL_5HR7_006	5HR7	0.1518	2	T-loop with 2 stacked bulged bases	D	G	52	U	53	U	54	C	55	G	56	A	57	C	60	cWW	tWH
42	HL_5HR6_003	5HR6	0.1509	2	T-loop with 2 stacked bulged bases	C	G	52	U	53	U	54	C	55	G	56	A	57	C	60	cWW	tWH
43	HL_2ZZM_004	2ZZM	0.1742	2	T-loop with 2 stacked bulged bases	B	G	53	U	54	U	55	C	56	A	57	A	58	C	61	cWW	tWH
44	HL_5X6B_003	5X6B	0.1551	2	T-loop with 2 stacked bulged bases	P	G	52	U	53	U	54	C	55	A	56	A	57	C	60	cWW	tWH
45	HL_2ZUE_003	2ZUE	0.1250	2	T-loop with 2 stacked bulged bases	B	G	953	U	954	U	955	C	956	A	957	A	958	C	961	cWW	tWH
46	HL_7KJT_003	7KJT	0.1317	2	T-loop with 2 stacked bulged bases	A	G	53	U	54	U	55	C	56	A	57	A	58	C	61	cWW	tWH
47	HL_4RDX_003	4RDX	0.1254	2	T-loop with 2 stacked bulged bases	C	G	53	U	54	U	55	C	56	A	57	A	58	C	61	cWW	tWH
48	HL_6UFM_003	6UFM	0.1306	2	T-loop with 2 stacked bulged bases	A	G	54	U	55	U	56	C	57	G	58	A	59	C	62	cWW	tWH
49	HL_3AL0_003	3AL0	0.1578	2	T-loop with 2 stacked bulged bases	E	G	53	U	54	U	55	C	56	G	57	A	58	C	61	cWW	tWH
50	HL_7UQ6_003	7UQ6	0.1681	2	T-loop with 2 stacked bulged bases	B	G	64	U	65	U	66	C	67	G	68	A	69	C	72	cWW	tWH
51	HL_7YSE_003	7YSE	0.1860	2	T-loop with 2 stacked bulged bases	E	G	53	U	54	U	55	C	56	G	57	A	58	C	61	cWW	tWH
52	HL_8S95_005	8S95	0.1705	2	T-loop with 2 stacked bulged bases	C	G	133	U	134	U	135	C	136	A	137	A	138	C	141	cWW	tWH
53	HL_4WT8_217	4WT8	0.1748	2	T-loop with 2 stacked bulged bases	D4	G	54	U	55	U	56	C	57	A	58	A	59	C	62	cWW	tWH
54	HL_4V9Q_215	4V9Q	0.1740	2	T-loop with 2 stacked bulged bases	DV	G	53	U	54	U	55	C	56	A	57	A	58	C	61	cWW	tWH
55	HL_2D6F_006	2D6F	0.1965	2	T-loop with 2 stacked bulged bases	F	G	953	U	954	U	955	C	956	G	957	A	958	C	961	cWW	tWH
56	HL_5UD5_003	5UD5	0.2388	2	T-loop with 2 stacked bulged bases	C	G	53	U	54	U	55	A	56	G	57	A	58	C	61	cWW	tWH
57	HL_3OVB_001	3OVB	0.2215	2	T-loop with 2 stacked bulged bases	C	G	12	U	13	U	14	C	15	A	16	A	17	C	20	cWW	tWH
58	HL_3VJR_001	3VJR	0.3194	2	T-loop with 2 bulged bases not stacked	B	G	13	U	14	U	15	C	16	G	17	A	18	C	21	cWW	tWH
59	HL_6NWY_035	6NWY	0.2938	2	T-loop with 2 stacked bulged bases	QV	G	53	U	54	U	55	C	56	G	57	A	58	C	61	cWW	ntWH
60	HL_2ZNI_003	2ZNI	0.3421	2	T-loop with 2 stacked bulged bases	C	G	53	U	54	G	55	A	56	A	57	A	58	C	61	cWW	tWH
61	HL_6ORD_037	6ORD	0.4270	2	T-loop with 2 stacked bulged bases	QY	G	53	U	54	U	55	C	56	G	57	A	58	C	61	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GUUCGAAUC	16
GUUCAAAUC	11
GUUCAAGUC	10
GUUCGAGUC	9
GUUCGAUUC	5
GUUCAAUUC	3
GUUCGAUCC	3
CAGUAAAUG	1
GUUCGACUC	1
GUUAGAUUC	1
GUGAAACUC	1

Non-Watson-Crick part of the motif

Sequence	Counts
UUCGAAU	16
UUCAAAU	11
UUCAAGU	10
UUCGAGU	9
UUCGAUU	5
UUCAAUU	3
UUCGAUC	3
AGUAAAU	1
UUCGACU	1
UUAGAUU	1
UGAAACU	1

Release history

Release	3.77	3.78	3.79	3.80	3.81	3.82	3.83
Date	2023-12-06	2024-01-03	2024-01-03	2024-01-31	2024-02-28	2024-03-27	2024-04-24
Status	New id, > 2 parents	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Motif HL_22280.1 Version HL_22280.1 of this group appears in releases 3.77 to 3.83 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif HL_22280.1 Version HL_22280.1 of this group appears in releases 3.77 to 3.83

Download

Csv

Json