#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4break 5 6 7 81-82-73-64-5
1 IL_1F7Y_0031F7Y0.15301B16S RIBOSOMAL RNA FRAGMENTG26A27||AG28||AG30*U39G40G41U42cWWcWWncwWcWW
2 IL_1FJG_0291FJG0.15331Tandem non-canonical cWW pairs (H)A SSU rRNAG662A663G664G666*U740G741G742U743cWWcWWcwWcWW
3 IL_1D4R_0011D4R0.12880Tandem non-canonical cWW pairsB+A29-MER OF MODIFIED SRP RNA HELIX 6G22A23C24C25*G4A5C6C7cWWcWWacWWcWW
4 IL_165D_001165D0.00000A+BDNA/RNA (5'-R(*GP*CP*UP*UP*CP*GP*GP*CP*)-D(*(BRU))-3')U3U4C5G6*U12U13C14G15cWWcWWcWWcWW
5 IL_1D4R_0031D4R0.13720Tandem non-canonical cWW pairsA+B29-MER OF MODIFIED SRP RNA HELIX 6G22A23C24C25*G4A5C6C7cWWcWWcWWcWW
6 IL_1G1X_0031G1X0.19691Tandem non-canonical cWW pairsD+E16S RIBOSOMAL RNAG662A663G664G666*U740G741G742U743cWWcWWcwWcWW
7 IL_1GID_0011GID0.22131AP4-P6 RNA RIBOZYME DOMAING103A104A105U107*A214G215C216C217cWWcWWcWWcWW
8 IL_402D_001402D0.81870Tandem non-canonical cWW pairsB+ARNA (8-mer)C111C112A113G114*C103C104A105G106cWWcWWcWWcWW
9 IL_2NOK_0072NOK0.71780D+CRNA (20-mer)G102U103C104G105*C62U63U64C65cWWcwWcWW
10 IL_2PN4_0092PN40.73690C+DRNA (24-mer) + RNA (20-mer)C62U63U64C65*G102U103C104G105cWWcWWcWwcWW
11 IL_1JID_0021JID0.40630Tandem non-canonical cWW pairsBHELIX 6 OF HUMAN SRP RNAG156A157C158C159*G138A139C140C141cWWcWWcWWcWW
12 IL_1L9A_0021L9A0.58270Tandem non-canonical cWW pairsBsignal recognition particle RNA S domainG120U121U122C123*G227A228U229C230cWWncWwncWWcWW
13 IL_1S72_0121S720.646500 LSU rRNAC287A288G289C290*G362A363C364G365cWWncWWncWWcWW
14 IL_1QBP_0021QBP0.62240Tandem non-canonical cWW pairsB+ARNA (15-mer)U22U23C24G25*U7U8C9G10cWWncWWcWWcWW
15 IL_2NOK_0042NOK0.70890B+ARNA (20-mer)G102U103C104G105*C62U63U64C65cWWncwWncWWcWW
16 IL_280D_002280D0.67530D+CRNA (12-mer)C41U42U43G44*C29U30U31G32cWWcwWcWwcWW
17 IL_255D_001255D0.66480Tandem non-canonical cWW pairsARNA (12-mer)U5||||2_656U6||||2_656C7||||2_656G8||||2_656*U5U6C7G8cWWcWWcWWcWW
18 IL_1QBP_0081QBP0.63400F+ERNA (15-mer)U82U83C84G85*U67U68C69G70cWWncWWcWWcWW
19 IL_1S72_0181S720.658200 LSU rRNAC596A597C598G599*C558U559C560G561cWWncWWcWWcWW
20 IL_280D_001280D0.66720Tandem non-canonical cWW pairsA+BRNA (12-mer)C5U6U7G8*C17U18U19G20cWWcwWcWwcWW
21 IL_1QBP_0051QBP0.63170D+CRNA (15-mer)U52U53C54G55*U37U38C39G40cWWncWWcWWcWW
22 IL_1L9A_0051L9A0.60640Tandem non-canonical cWW pairsBsignal recognition particle RNA S domainG156A157C158C159*G138A139C140C141cWWncWWancWWcWW
23 IL_2DR2_0012DR20.70600B tRNAG10C11G12C13*G22C23G24C25ncWWncWWcWW
24 IL_2PN4_0042PN40.73360A+BRNA (24-mer) + RNA (20-mer)C62U63U64C65*G102U103C104G105cWWcWWcWwcWW
25 IL_2O3Y_0032O3Y0.73221B+ARNA (23-mer)C30G31C32U33*A15A17A18G19cWWcWScWW
26 IL_2ZJR_0402ZJR0.75550Tandem non-canonical cWW pairs (H)X LSU rRNAA1175U1176U1177C1178*G1196U1197C1198U1199cWWcWWcWwcWW
27 IL_413D_001413D0.89480Tandem non-canonical cWW pairsARNA (13-mer)U6U7C8G9*U6||||2_555U7||||2_555C8||||2_555G9||||2_555cWWcWWcWWcWW
28 IL_422D_001422D1.02500Tandem non-canonical cWW pairsA+BRNA (12-mer)U7U8C9G10*U19U20C21G22cWWcWWcWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
UUCG*UUCG7
GACC*GACC4
GAGAG*UGGU3
GUCG*CUUC2
CUUC*GUCG2
CUUG*CUUG2
GAAUU*AGCC1
CCAG*CCAG1
GUUC*GAUC1
CAGC*GACG1
CACG*CUCG1
GCGC*GCGC1
CGCU*AAAAG1
AUUC*GUCU1
Non-Watson-Crick part of the motif
SequenceCounts
UC*UC7
AC*AC4
AGA*GG3
UU*UC3
UC*UU2
UU*UU2
AAU*GC1
CA*CA1
UU*AU1
AG*AC1
AC*UC1
CG*CG1
GC*AAA1
Annotations
  • (14)
  • Tandem non-canonical cWW pairs (12)
  • Tandem non-canonical cWW pairs (H) (2)
  • Basepair signature
    Heat map statistics
    Min 0.06 | Avg 0.57 | Max 1.23
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