Motif IL_14877.2 Version IL_14877.2 of this group appears in releases 0.3 to 0.3
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 3-6 | 4-5 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1F7Y_003 | 1F7Y | 0.1530 | 1 | B | G | 26 | A | 27||A | G | 28||A | G | 30 | * | U | 39 | G | 40 | G | 41 | U | 42 | cWW | cWW | ncwW | cWW | |
| 2 | IL_1FJG_029 | 1FJG | 0.1533 | 1 | Tandem non-canonical cWW pairs (H) | A | G | 662 | A | 663 | G | 664 | G | 666 | * | U | 740 | G | 741 | G | 742 | U | 743 | cWW | cWW | cwW | cWW |
| 3 | IL_1D4R_001 | 1D4R | 0.1288 | 0 | Tandem non-canonical cWW pairs | B+A | G | 22 | A | 23 | C | 24 | C | 25 | * | G | 4 | A | 5 | C | 6 | C | 7 | cWW | cWWa | cWW | cWW |
| 4 | IL_165D_001 | 165D | 0.0000 | 0 | A+B | U | 3 | U | 4 | C | 5 | G | 6 | * | U | 12 | U | 13 | C | 14 | G | 15 | cWW | cWW | cWW | cWW | |
| 5 | IL_1D4R_003 | 1D4R | 0.1372 | 0 | Tandem non-canonical cWW pairs | A+B | G | 22 | A | 23 | C | 24 | C | 25 | * | G | 4 | A | 5 | C | 6 | C | 7 | cWW | cWW | cWW | cWW |
| 6 | IL_1G1X_003 | 1G1X | 0.1969 | 1 | Tandem non-canonical cWW pairs | D+E | G | 662 | A | 663 | G | 664 | G | 666 | * | U | 740 | G | 741 | G | 742 | U | 743 | cWW | cWW | cwW | cWW |
| 7 | IL_1GID_001 | 1GID | 0.2213 | 1 | A | G | 103 | A | 104 | A | 105 | U | 107 | * | A | 214 | G | 215 | C | 216 | C | 217 | cWW | cWW | cWW | cWW | |
| 8 | IL_402D_001 | 402D | 0.8187 | 0 | Tandem non-canonical cWW pairs | B+A | C | 111 | C | 112 | A | 113 | G | 114 | * | C | 103 | C | 104 | A | 105 | G | 106 | cWW | cWW | cWW | cWW |
| 9 | IL_2NOK_007 | 2NOK | 0.7178 | 0 | D+C | G | 102 | U | 103 | C | 104 | G | 105 | * | C | 62 | U | 63 | U | 64 | C | 65 | cWW | cwW | cWW | ||
| 10 | IL_2PN4_009 | 2PN4 | 0.7369 | 0 | C+D | C | 62 | U | 63 | U | 64 | C | 65 | * | G | 102 | U | 103 | C | 104 | G | 105 | cWW | cWW | cWw | cWW | |
| 11 | IL_1JID_002 | 1JID | 0.4063 | 0 | Tandem non-canonical cWW pairs | B | G | 156 | A | 157 | C | 158 | C | 159 | * | G | 138 | A | 139 | C | 140 | C | 141 | cWW | cWW | cWW | cWW |
| 12 | IL_1L9A_002 | 1L9A | 0.5827 | 0 | Tandem non-canonical cWW pairs | B | G | 120 | U | 121 | U | 122 | C | 123 | * | G | 227 | A | 228 | U | 229 | C | 230 | cWW | ncWw | ncWW | cWW |
| 13 | IL_1S72_012 | 1S72 | 0.6465 | 0 | 0 | C | 287 | A | 288 | G | 289 | C | 290 | * | G | 362 | A | 363 | C | 364 | G | 365 | cWW | ncWW | ncWW | cWW | |
| 14 | IL_1QBP_002 | 1QBP | 0.6224 | 0 | Tandem non-canonical cWW pairs | B+A | U | 22 | U | 23 | C | 24 | G | 25 | * | U | 7 | U | 8 | C | 9 | G | 10 | cWW | ncWW | cWW | cWW |
| 15 | IL_2NOK_004 | 2NOK | 0.7089 | 0 | B+A | G | 102 | U | 103 | C | 104 | G | 105 | * | C | 62 | U | 63 | U | 64 | C | 65 | cWW | ncwW | ncWW | cWW | |
| 16 | IL_280D_002 | 280D | 0.6753 | 0 | D+C | C | 41 | U | 42 | U | 43 | G | 44 | * | C | 29 | U | 30 | U | 31 | G | 32 | cWW | cwW | cWw | cWW | |
| 17 | IL_255D_001 | 255D | 0.6648 | 0 | Tandem non-canonical cWW pairs | A | U | 5||||2_656 | U | 6||||2_656 | C | 7||||2_656 | G | 8||||2_656 | * | U | 5 | U | 6 | C | 7 | G | 8 | cWW | cWW | cWW | cWW |
| 18 | IL_1QBP_008 | 1QBP | 0.6340 | 0 | F+E | U | 82 | U | 83 | C | 84 | G | 85 | * | U | 67 | U | 68 | C | 69 | G | 70 | cWW | ncWW | cWW | cWW | |
| 19 | IL_1S72_018 | 1S72 | 0.6582 | 0 | 0 | C | 596 | A | 597 | C | 598 | G | 599 | * | C | 558 | U | 559 | C | 560 | G | 561 | cWW | ncWW | cWW | cWW | |
| 20 | IL_280D_001 | 280D | 0.6672 | 0 | Tandem non-canonical cWW pairs | A+B | C | 5 | U | 6 | U | 7 | G | 8 | * | C | 17 | U | 18 | U | 19 | G | 20 | cWW | cwW | cWw | cWW |
| 21 | IL_1QBP_005 | 1QBP | 0.6317 | 0 | D+C | U | 52 | U | 53 | C | 54 | G | 55 | * | U | 37 | U | 38 | C | 39 | G | 40 | cWW | ncWW | cWW | cWW | |
| 22 | IL_1L9A_005 | 1L9A | 0.6064 | 0 | Tandem non-canonical cWW pairs | B | G | 156 | A | 157 | C | 158 | C | 159 | * | G | 138 | A | 139 | C | 140 | C | 141 | cWW | ncWWa | ncWW | cWW |
| 23 | IL_2DR2_001 | 2DR2 | 0.7060 | 0 | B | G | 10 | C | 11 | G | 12 | C | 13 | * | G | 22 | C | 23 | G | 24 | C | 25 | ncWW | ncWW | cWW | ||
| 24 | IL_2PN4_004 | 2PN4 | 0.7336 | 0 | A+B | C | 62 | U | 63 | U | 64 | C | 65 | * | G | 102 | U | 103 | C | 104 | G | 105 | cWW | cWW | cWw | cWW | |
| 25 | IL_2O3Y_003 | 2O3Y | 0.7322 | 1 | B+A | C | 30 | G | 31 | C | 32 | U | 33 | * | A | 15 | A | 17 | A | 18 | G | 19 | cWW | cWS | cWW | ||
| 26 | IL_2ZJR_040 | 2ZJR | 0.7555 | 0 | Tandem non-canonical cWW pairs (H) | X | A | 1175 | U | 1176 | U | 1177 | C | 1178 | * | G | 1196 | U | 1197 | C | 1198 | U | 1199 | cWW | cWW | cWw | cWW |
| 27 | IL_413D_001 | 413D | 0.8948 | 0 | Tandem non-canonical cWW pairs | A | U | 6 | U | 7 | C | 8 | G | 9 | * | U | 6||||2_555 | U | 7||||2_555 | C | 8||||2_555 | G | 9||||2_555 | cWW | cWW | cWW | cWW |
| 28 | IL_422D_001 | 422D | 1.0250 | 0 | Tandem non-canonical cWW pairs | A+B | U | 7 | U | 8 | C | 9 | G | 10 | * | U | 19 | U | 20 | C | 21 | G | 22 | cWW | cWW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUCG*UUCG | 7 |
| GACC*GACC | 4 |
| GAGAG*UGGU | 3 |
| GUCG*CUUC | 2 |
| CUUC*GUCG | 2 |
| CUUG*CUUG | 2 |
| GAAUU*AGCC | 1 |
| CCAG*CCAG | 1 |
| GUUC*GAUC | 1 |
| CAGC*GACG | 1 |
| CACG*CUCG | 1 |
| GCGC*GCGC | 1 |
| CGCU*AAAAG | 1 |
| AUUC*GUCU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UC*UC | 7 |
| AC*AC | 4 |
| AGA*GG | 3 |
| UU*UC | 3 |
| UC*UU | 2 |
| UU*UU | 2 |
| AAU*GC | 1 |
| CA*CA | 1 |
| UU*AU | 1 |
| AG*AC | 1 |
| AC*UC | 1 |
| CG*CG | 1 |
| GC*AAA | 1 |
Release history
| Release | 0.3 |
|---|---|
| Date | 2011-12-08 |
| Status | Updated, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_14877.2 | Only in the parent motif |
|---|---|---|---|
| IL_14877.1 Compare | IL_2PN4_009, IL_2NOK_004, IL_255D_001, IL_1FJG_029, IL_165D_001, IL_2PN4_004, IL_413D_001, IL_280D_002, IL_280D_001, IL_1L9A_005, IL_2DR2_001, IL_1L9A_002, IL_1QBP_008, IL_2NOK_007, IL_1QBP_002, IL_1D4R_001, IL_1QBP_005, IL_1D4R_003, IL_2ZJR_040, IL_2O3Y_003, IL_402D_001, IL_422D_001, IL_1JID_002, IL_1GID_001, IL_1S72_018, IL_1S72_012, IL_1G1X_003, IL_1F7Y_003 | IL_1S72_037, IL_1GID_008 |
Children motifs
| Child motif | Common motif instances | Only in IL_14877.2 | Only in the child motif |
|---|---|---|---|
| IL_14877.3 Compare | IL_2NOK_007, IL_2NOK_004, IL_255D_001, IL_2PN4_009, IL_165D_001, IL_2PN4_004, IL_413D_001, IL_280D_002, IL_280D_001, IL_1FJG_029, IL_2DR2_001, IL_1L9A_002, IL_1QBP_008, IL_1QBP_002, IL_1D4R_001, IL_1QBP_005, IL_1D4R_003, IL_2ZJR_040, IL_2O3Y_003, IL_402D_001, IL_422D_001, IL_1JID_002, IL_1GID_001, IL_1S72_018, IL_1S72_012, IL_1G1X_003, IL_1F7Y_003, IL_1L9A_005 | IL_1S72_037, IL_1GID_008 |
- Annotations
-
- (14)
- Tandem non-canonical cWW pairs (12)
- Tandem non-canonical cWW pairs (H) (2)
- Basepair signature
- Heat map statistics
- Min 0.06 | Avg 0.57 | Max 1.23
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