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Motif IL_14877.1 Version IL_14877.1 of this group appears in releases 0.2 to 0.2

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4break 5 6 7 81-82-73-64-5
1 IL_2PN4_0092PN40.91870C+DRNA (24-mer) + RNA (20-mer)C62U63U64C65*G102U103C104G105cWWcWWcWwcWW
2 IL_2PN4_0042PN40.91060A+BRNA (24-mer) + RNA (20-mer)C62U63U64C65*G102U103C104G105cWWcWWcWwcWW
3 IL_1QBP_0021QBP0.87250Tandem non-canonical cWW pairsB+ARNA (15-mer)U22U23C24G25*U7U8C9G10cWWncWWcWWcWW
4 IL_1D4R_0031D4R0.89480Tandem non-canonical cWW pairsA+B29-MER OF MODIFIED SRP RNA HELIX 6G22A23C24C25*G4A5C6C7cWWcWWcWWcWW
5 IL_1D4R_0011D4R0.89100Tandem non-canonical cWW pairsB+A29-MER OF MODIFIED SRP RNA HELIX 6G22A23C24C25*G4A5C6C7cWWcWWacWWcWW
6 IL_2NOK_0072NOK0.88050D+CRNA (20-mer)G102U103C104G105*C62U63U64C65cWWcwWcWW
7 IL_1JID_0021JID0.89760Tandem non-canonical cWW pairsBHELIX 6 OF HUMAN SRP RNAG138A139C140C141*G156A157C158C159cWWcWWcWWcWW
8 IL_402D_001402D1.04890Tandem non-canonical cWW pairsB+ARNA (8-mer)C111C112A113G114*C103C104A105G106cWWcWWcWWcWW
9 IL_280D_001280D0.93480Tandem non-canonical cWW pairsB+ARNA (12-mer)C17U18U19G20*C5U6U7G8cWWcwWcWwcWW
10 IL_280D_002280D0.95180D+CRNA (12-mer)C41U42U43G44*C29U30U31G32cWWcwWcWwcWW
11 IL_1QBP_0051QBP0.87790D+CRNA (15-mer)U52U53C54G55*U37U38C39G40cWWncWWcWWcWW
12 IL_1S72_0181S720.722100 LSU rRNAC558U559C560G561*C596A597C598G599cWWcWWncWWcWW
13 IL_1L9A_0021L9A0.70520Tandem non-canonical cWW pairsBsignal recognition particle RNA S domainG227A228U229C230*G120U121U122C123cWWncWWncwWcWW
14 IL_422D_001422D0.85480Tandem non-canonical cWW pairsA+BRNA (12-mer)U7U8C9G10*U19U20C21G22cWWcWWcWWcWW
15 IL_413D_001413D0.84690Tandem non-canonical cWW pairsARNA (13-mer)U6U7C8G9*U6||||2_555U7||||2_555C8||||2_555G9||||2_555cWWcWWcWWcWW
16 IL_1S72_0121S720.884500 LSU rRNAC287A288G289C290*G362A363C364G365cWWncWWncWWcWW
17 IL_165D_001165D0.82540A+BDNA/RNA (5'-R(*GP*CP*UP*UP*CP*GP*GP*CP*)-D(*(BRU))-3')U3U4C5G6*U12U13C14G15cWWcWWcWWcWW
18 IL_255D_001255D0.79310Tandem non-canonical cWW pairsARNA (12-mer)U5U6C7G8*U5||||2_656U6||||2_656C7||||2_656G8||||2_656cWWcWWcWWcWW
19 IL_1F7Y_0031F7Y0.77621B16S RIBOSOMAL RNA FRAGMENTG26A27||AG28||AG30*U39G40G41U42cWWcWWncwWcWW
20 IL_1GID_0081GID0.71701BP4-P6 RNA RIBOZYME DOMAINA214G215C216C217*G103A104A105U107cWWcWWcWWcWW
21 IL_1L9A_0051L9A0.55730Tandem non-canonical cWW pairsBsignal recognition particle RNA S domainG156A157C158C159*G138A139C140C141cWWncWWancWWcWW
22 IL_2O3Y_0032O3Y0.61651B+ARNA (23-mer)C30G31C32U33*A15A17A18G19cWWcWScWW
23 IL_1S72_0371S720.623500 LSU rRNAC1000U1001G1002U1003*A965U966U967G968cWWcwWcWScWW
24 IL_1QBP_0081QBP0.72250F+ERNA (15-mer)U82U83C84G85*U67U68C69G70cWWncWWcWWcWW
25 IL_1FJG_0291FJG0.72481Tandem non-canonical cWW pairs (H)A SSU rRNAG662A663G664G666*U740G741G742U743cWWcWWcwWcWW
26 IL_1GID_0011GID0.62711AP4-P6 RNA RIBOZYME DOMAING103A104A105U107*A214G215C216C217cWWcWWcWWcWW
27 IL_1G1X_0031G1X0.75201Tandem non-canonical cWW pairsD+E16S RIBOSOMAL RNAG662A663G664G666*U740G741G742U743cWWcWWcwWcWW
28 IL_2ZJR_0402ZJR0.91030Tandem non-canonical cWW pairs (H)X LSU rRNAG1196U1197C1198U1199*A1175U1176U1177C1178cWWcwWcWWcWW
29 IL_2DR2_0012DR20.00000B tRNAG10C11G12C13*G22C23G24C25ncWWncWWcWW
30 IL_2NOK_0042NOK0.72320B+ARNA (20-mer)G102U103C104G105*C62U63U64C65cWWncwWncWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
UUCG*UUCG7
GACC*GACC4
GAGAG*UGGU3
CUUC*GUCG2
GUCG*CUUC2
CUUG*CUUG2
CCAG*CCAG1
CUCG*CACG1
GAUC*GUUC1
CAGC*GACG1
AGCC*GAAUU1
CGCU*AAAAG1
CUGU*AUUG1
GAAUU*AGCC1
GUCU*AUUC1
GCGC*GCGC1
Non-Watson-Crick part of the motif
SequenceCounts
UC*UC7
AC*AC4
UC*UU3
AGA*GG3
UU*UC2
UU*UU2
CA*CA1
UC*AC1
AU*UU1
AG*AC1
GC*AAU1
GC*AAA1
UG*UU1
AAU*GC1
CG*CG1

Release history

Release0.2
Date2011-12-08
Status> 2 parents

Parent motifs

Parent motifCommon motif instancesOnly in IL_14877.1Only in the parent motif
IL_85670.1
Compare		IL_2NOK_007, IL_2NOK_004, IL_255D_001, IL_2PN4_009, IL_165D_001, IL_2PN4_004, IL_413D_001, IL_280D_002, IL_280D_001, IL_1G1X_003, IL_1FJG_029, IL_1L9A_002, IL_1QBP_008, IL_1QBP_002, IL_1D4R_001, IL_1QBP_005, IL_1D4R_003, IL_2ZJR_040, IL_402D_001, IL_422D_001, IL_1GID_008, IL_1JID_002, IL_1GID_001, IL_1S72_018, IL_1S72_012, IL_1L9A_005, IL_1F7Y_003IL_2DR2_001, IL_1S72_037, IL_2O3Y_003
IL_55389.1
Compare		IL_2DR2_001, IL_2O3Y_003IL_2PN4_009, IL_2NOK_004, IL_255D_001, IL_2NOK_007, IL_165D_001, IL_2PN4_004, IL_413D_001, IL_280D_002, IL_280D_001, IL_1L9A_005, IL_1FJG_029, IL_1L9A_002, IL_1QBP_008, IL_1QBP_002, IL_1D4R_001, IL_1QBP_005, IL_1D4R_003, IL_2ZJR_040, IL_402D_001, IL_422D_001, IL_1GID_008, IL_1JID_002, IL_1GID_001, IL_1S72_018, IL_1S72_037, IL_1S72_012, IL_1G1X_003, IL_1F7Y_003IL_2ZJR_057, IL_3F1H_086, IL_1SAQ_002, IL_1FJG_059, IL_3D0U_002, IL_2ZJR_082, IL_1SA9_002, IL_1SA9_001, IL_1S72_098, IL_3DIR_002
IL_28652.1
Compare		IL_1S72_037IL_2PN4_009, IL_2NOK_004, IL_255D_001, IL_2NOK_007, IL_165D_001, IL_2PN4_004, IL_413D_001, IL_280D_002, IL_280D_001, IL_1L9A_005, IL_2DR2_001, IL_1L9A_002, IL_1QBP_008, IL_1QBP_002, IL_1D4R_001, IL_1QBP_005, IL_1D4R_003, IL_2ZJR_040, IL_2O3Y_003, IL_402D_001, IL_422D_001, IL_1GID_008, IL_1JID_002, IL_1GID_001, IL_1S72_018, IL_1FJG_029, IL_1S72_012, IL_1G1X_003, IL_1F7Y_003IL_1DUQ_001, IL_1DUQ_005, IL_1DUQ_003, IL_1CSL_001, IL_1DUQ_007

Children motifs

Child motifCommon motif instancesOnly in IL_14877.1Only in the child motif
IL_14877.2
Compare		IL_2PN4_009, IL_2NOK_004, IL_255D_001, IL_1FJG_029, IL_165D_001, IL_2PN4_004, IL_413D_001, IL_280D_002, IL_280D_001, IL_1L9A_005, IL_2DR2_001, IL_1L9A_002, IL_1QBP_008, IL_2NOK_007, IL_1QBP_002, IL_1D4R_001, IL_1QBP_005, IL_1D4R_003, IL_2ZJR_040, IL_2O3Y_003, IL_402D_001, IL_422D_001, IL_1JID_002, IL_1GID_001, IL_1S72_018, IL_1S72_012, IL_1G1X_003, IL_1F7Y_003IL_1S72_037, IL_1GID_008
IL_58849.1
Compare		IL_1S72_037, IL_1GID_008IL_2NOK_007, IL_2NOK_004, IL_255D_001, IL_2PN4_009, IL_165D_001, IL_2PN4_004, IL_413D_001, IL_280D_002, IL_280D_001, IL_1FJG_029, IL_2DR2_001, IL_1L9A_002, IL_1QBP_008, IL_1QBP_002, IL_1D4R_001, IL_1QBP_005, IL_1D4R_003, IL_2ZJR_040, IL_2O3Y_003, IL_402D_001, IL_422D_001, IL_1JID_002, IL_1GID_001, IL_1S72_018, IL_1S72_012, IL_1G1X_003, IL_1F7Y_003, IL_1L9A_005IL_1DUQ_001, IL_1DUQ_005, IL_1CSL_001, IL_1FJG_045, IL_1DUQ_007
Annotations
  • (16)
  • Tandem non-canonical cWW pairs (12)
  • Tandem non-canonical cWW pairs (H) (2)
    • Basepair signature
    Heat map statistics
    Min 0.06 | Avg 0.57 | Max 1.23
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