RNA 3D Hub //

Motif IL_73775.1 Version IL_73775.1 of this group appears in releases 3.77 to 3.79

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3break 4 5 61-51-62-52-63-43-5
1 IL_4V88_4554V880.46221Isolated non-canonical cWW pairA6 SSU rRNAC1339A1341C1342*G1383A1384G1385cWWncwWcWW
2 IL_1XJR_0031XJR0.40691Isolated non-canonical cWW pairAs2m RNAC16A17C18*G32G34G35cWWcWWcWW
3 IL_4R4V_0064R4V0.32072Isolated non-canonical cWW pairAVS ribozyme RNAG724A725C726*G749G752C753cWWcWWcWW
4 IL_1MFQ_0031MFQ0.35720Isolated non-canonical cWW pairA SRP RNAU132A133U134*A163G164G165cWWncWWcWW
5 IL_5TBW_3785TBW0.26541Isolated non-canonical cWW pairAS 5S rRNAC94A95U96*A84G85G87cWWcWWcWW
6 IL_5MSF_0015MSF0.23861Isolated non-canonical cWW pairRRNA (18-mer)C13||||P_1A14||||P_1C15||||P_1*G3||||P_1G4||||P_1G6||||P_1cWWcWWcWW
7 IL_3D0U_0063D0U0.21390Isolated non-canonical cWW pairALysine Riboswitch RNAG112G113G114*C134A135C136cWWcWWcWW
8 IL_3DIL_0063DIL0.22980Isolated non-canonical cWW pairARNA (174-MER)G115G116G117*C137A138C139cWWcWWcWW
9 IL_5TBW_1275TBW0.25690Isolated non-canonical cWW pair1 LSU rRNAC3233A3234C3235*G3252G3253G3254cWWcWWcWW
10 IL_6XUS_0036XUS0.26790ARNA dodecamer with a 6-hydrazino-2-aminopurine modified baseU1008A1009G1010*C1003||||2_656G1004||||2_656A1005||||2_656cWWcWWcWW
11 IL_3HHN_0043HHN0.26520Isolated non-canonical cWW pairEClass I ligase ribozyme, self-ligation productA102A103C104*G87G88U89cWWcWWcWW
12 IL_3IVK_0023IVK0.30660Isolated non-canonical cWW pairMclass I ligase productA102A103C104*G87G88U89cWWcWWcWWncWW
13 IL_4V88_4724V880.33690Isolated non-canonical cWW pairA6 SSU rRNAG1727A1728C1729*G1672G1673C1674cWWcWWcWW
14 IL_5TBW_0685TBW0.29840Isolated non-canonical cWW pair1 LSU rRNAG1786A1787C1788*G1661G1662C1663cWWcWWcWW
15 IL_2R8S_0012R8S0.25880Isolated non-canonical cWW pairRP4-P6 RNA RIBOZYME DOMAING110G111G112*C208A210C211cWWcWWcWW
16 IL_4M4O_0024M4O0.24840Isolated non-canonical cWW pairBRNA (59-MER)G46A47C48*G12G13C14cWWcWWcWW
17 IL_8D29_0018D290.26300Isolated non-canonical cWW pairCRNA (34-MER)G4A5U6*A29G30C31cWWcWWncWW
18 IL_5TBW_0425TBW0.26560Isolated non-canonical cWW pair1 LSU rRNAU1039A1040U1041*A1009G1010A1011cWWcWWcWW
19 IL_4LFB_0594LFB0.27030Isolated non-canonical cWW pairA SSU rRNAC1412A1413U1414*G1486G1487G1488cWWcWWcWW
20 IL_5J7L_0615J7L0.23660Isolated non-canonical cWW pairAA SSU rRNAC1412A1413U1414*G1486G1487G1488cWWcWWcWW
21 IL_4LFB_0064LFB0.27940Isolated non-canonical cWW pairA SSU rRNAC67G68G69*C99A101G102cWWcWWcWW
22 IL_6CZR_1186CZR0.32130Isolated non-canonical cWW pair1a SSU rRNAC68G69G70*C94A95G96cWWncWWcWW
23 IL_4V88_4674V880.17050Isolated non-canonical cWW pairA6 SSU rRNAU1650A1651C1652*G1748A1749A1750cWWcWwcWW
24 IL_5UNE_0075UNE0.23930Isolated non-canonical cWW pairA+BRNA (47-MER)G31G32C33*G12G13C14cWWncWW
25 IL_5UNE_0035UNE0.17630Isolated non-canonical cWW pairB+ARNA (47-MER)G31G32C33*G12G13C14cWWcWW
26 IL_8AF0_0018AF00.00000Isolated non-canonical cWW pairD+CRNA (19-mer)A37C38G39*C31C32U33cWWcWW
27 IL_5ED1_0025ED10.15150Isolated non-canonical cWW pairB+CRNA (23-mer)G13A14C15*G9A10C11cWWcWwcWW
28 IL_4J50_0024J500.20350Isolated non-canonical cWW pairA+BRNA (19-mer)C10A11G12*C10A11G12cWWcWW
29 IL_7VFT_0037VFT0.23230Isolated non-canonical cWW pairARNA (23-mer)C11A12G13*C11||||12_555A12||||12_555G13||||12_555cWWcWW
30 IL_4V88_4194V880.26060Isolated non-canonical cWW pairA6 SSU rRNAC646G647G648*C686G687G688cWWcWW
31 IL_5H1K_0015H1K0.30260Isolated non-canonical cWW pairC+DU4 snRNA (13-mer)G7A8C9*G7A8C9cWWcWW
32 IL_5UNE_0045UNE0.26940Isolated non-canonical cWW pairA+BRNA (47-MER)U16A17G18*C27A28G29cWWcWwcWW
33 IL_7LYF_0027LYF0.22160Isolated non-canonical cWW pairA tRNAU46G47G48*C84A85A86cWWncWWncWW
34 IL_7A0S_0317A0S0.21100Isolated non-canonical cWW pairX LSU rRNAU974C975C976*G963A964G965cWWcWWcWW
35 IL_7RQB_0347RQB0.21230Isolated non-canonical cWW pair (H)1A LSU rRNAU963C964C965*G952A953G954cWWcWWcWW
36 IL_353D_001353D0.21940B+ARNA (12-mer)U15G16C17*G8U9G10cWWncWWacWW
37 IL_4YHW_0014YHW0.20830Isolated non-canonical cWW pairE+CU6 snRNA fragmentC68C69U70*A11C12G13cWWcWW
38 IL_4WF9_0424WF90.17860Isolated non-canonical cWW pairX LSU rRNAC1160A1161C1162*G1081C1082G1083cWWncWWcWW
39 IL_4LFB_0614LFB0.14520Isolated non-canonical cWW pairA SSU rRNAG1474G1475G1476*C1424U1425C1426cWWncWWcWW
40 IL_3SZX_0033SZX0.16980Isolated non-canonical cWW pairB+ARNA (19-mer)C7U8G9*C13U14G15cWWncWwcWW
41 IL_8E4X_0018E4X0.18020Isolated non-canonical cWW pairC+DRNA (32-mer)G14A15G16*C17C18C19cWWcWWcWW
42 IL_8E0F_0028E0F0.19060Isolated non-canonical cWW pairC+DRNA (32-mer)G14A15G16*C17C18C19cWWcWWcWW
43 IL_5C5W_0025C5W0.21430Isolated non-canonical cWW pairARNA (19-mer)U9||AC10||AA11||A*U9||A||5_556C10||A||5_556A11||A||5_556cWWcWW
44 IL_7ECK_0137ECK0.19040Isolated non-canonical cWW pairJ+IDNA/RNA (5'-R(*GP*GP*AP*CP*U)-D(P*(CBR))-R(P*GP*AP*AP*UP*CP*C)-3')A8A9U10*A3C4U5cWWncWWacWW
45 IL_7ECK_0157ECK0.16420Isolated non-canonical cWW pairI+JDNA/RNA (5'-R(*GP*GP*AP*CP*U)-D(P*(CBR))-R(P*GP*AP*AP*UP*CP*C)-3')A8A9U10*A3C4U5ncWWncWWacWW
46 IL_7ECN_0017ECN0.17020Isolated non-canonical cWW pairB+ARNA (12-mer)G8A9C10*G3C4C5cWWcWW
47 IL_7ECN_0027ECN0.22730Isolated non-canonical cWW pairA+BRNA (12-mer)G8A9C10*G3C4C5cWWcWW
48 IL_3ICQ_0033ICQ0.26540ERNA (62-MER)G3G4A5*U68U69C70cWWncWWcWW
49 IL_1Y27_0011Y270.27800Isolated non-canonical cWW pairXPurine riboswitchC43A44A45*U25C26G27cWWcWWcWW
50 IL_7KFN_0017KFN0.18870Isolated non-canonical cWW pairB+CGli1 8AZ 23mer RNA + Gli1 1W5 23mer RNAG14A15G16*C8C9C10cWWcWWcWW
51 IL_5ED2_0045ED20.18990Isolated non-canonical cWW pairE+FRNA (23-mer)G14A15G16*C8C9C10cWWcWWcWW
52 IL_6IA2_0026IA20.19950Isolated non-canonical cWW pairB+ARNA (19-mer)G11||AA12G13*C7C8C9cWWcWWcWW
53 IL_6IA2_0056IA20.18520Isolated non-canonical cWW pairB+ARNA (19-mer)G2A3G4*C16C17C18cWWcWWcWW
54 IL_7ECO_0057ECO0.25070Isolated non-canonical cWW pairE+FRNA (12-mer)G3U4C5*G8U9C10cWWcWW
55 IL_4KNQ_0034KNQ0.26580Isolated non-canonical cWW pairBRNA (20-mer)C210C211G212*C210||||4_555C211||||4_555G212||||4_555cWWcWW
56 IL_4JGN_0034JGN0.28300Isolated non-canonical cWW pairERNA (20-mer)C511U512G513*C511||||4_555U512||||4_555G513||||4_555cWWncwWcWW
57 IL_4J39_0014J390.30780Isolated non-canonical cWW pairBRNA (19-mer)G9||||4_555C10||||4_555C11||||4_555*G9C10C11cWWcWW
58 IL_1ZH5_0011ZH50.29260Isolated non-canonical cWW pairD+CRNA (9-mer)C3U4G5*C3U4G5cWWncWwcWW
59 IL_5AY2_0015AY20.27710Isolated non-canonical cWW pairA+BRNA (12-mer)A3C4U5*A8C9U10cWWcWW
60 IL_5AY2_0035AY20.26870Isolated non-canonical cWW pairB+ARNA (12-mer)A3C4U5*A8C9U10cWWcWW
61 IL_7ECO_0067ECO0.25100Isolated non-canonical cWW pairF+ERNA (12-mer)G3U4C5*G8U9C10cWWcWW
62 IL_7OFZ_0017OFZ0.23950Isolated non-canonical cWW pairCRNA (19-mer)C9||||7_555C10||||7_555G11||||7_555*C9C10G11cWWcWW
63 IL_7ZLQ_0017ZLQ0.24210Isolated non-canonical cWW pairCRNA (13-mer)G5C6C7*G5||||8_555C6||||8_555C7||||8_555cWWcWW
64 IL_7OFW_0017OFW0.27760Isolated non-canonical cWW pairCRNA (18-mer)C9C10G11*C9||||7_555C10||||7_555G11||||7_555cWWcWW
65 IL_3SZX_0023SZX0.27880Isolated non-canonical cWW pairA+BRNA (19-mer)C10U11G12*C10U11G12cWWncWwcWW
66 IL_4NGF_0024NGF0.29920Isolated non-canonical cWW pairH+GRNA (17-mer)G7U8C9*G7U8C9cWWncWwcWW
67 IL_2O3Y_0042O3Y0.33680Isolated non-canonical cWW pairA+BRNA (23-mer)G19U20C21*G28U29C30cWWcWwcWW
68 IL_3BNN_0083BNN0.35870Isolated non-canonical cWW pairD+CA site of human ribosomeG3U4C5*G17U18C19cWWcWwcWW
69 IL_3BNR_0123BNR0.35360Isolated non-canonical cWW pairD+CA site of human mitochondrial ribosome, chain threeG3U4C5*G19U20C21cWWcWwcWW
70 IL_3BNN_0053BNN0.36610Isolated non-canonical cWW pairD+CA site of human ribosomeG17U18C19*G3U4C5cWWcWwcWW
71 IL_3BNT_0063BNT0.43890Isolated non-canonical cWW pairAA site of human mitochondrial ribosomeG18U19C20*G4||||4_665U5||||4_665C6||||4_665cWWcWwcWW
72 IL_3BNT_0013BNT0.43890Isolated non-canonical cWW pairAA site of human mitochondrial ribosomeG18||||4_665U19||||4_665C20||||4_665*G4U5C6cWWcWwcWW
73 IL_7L0Z_0017L0Z0.40760Isolated non-canonical cWW pairGRNA (69-MER)C58U59C60*G10U11G12cWWcWwcWW
74 IL_2ET8_0042ET80.40320Isolated non-canonical cWW pairA+BRNA (22-mer)G18U19C20*G27U28C29cWWcWwcWW
75 IL_3BNR_0073BNR0.37220Isolated non-canonical cWW pairD+CA site of human mitochondrial ribosome, chain threeG17U18C19*G5U6C7cWWcWwcWW
76 IL_1U6B_0051U6B0.41310Isolated non-canonical cWW pairB197-MERC100U101U102*A117U118G119cWWcWwcWW
77 IL_2O3V_0042O3V0.40780Isolated non-canonical cWW pairA+BRNA (23-mer)G19U20C21*G28U29C30cWWcWwcWW
78 IL_5TBW_0345TBW0.37180Isolated non-canonical cWW pair1 LSU rRNAU954U955U956*A965U966A967cWWcWwcWW
79 IL_4TS2_0044TS20.37520Isolated non-canonical cWW pairX+YSpinach aptamer RNA, bimolecular constructG20U21G22*C77U78C79cWWcWwcWW
80 IL_5WTI_0025WTI0.37590Isolated non-canonical cWW pairBRNA (123-MER)G18U19C20*G10U11C12cWWcWwcWW
81 IL_1L9A_0071L9A0.35480Isolated cWH basepairBsignal recognition particle RNA S domainG187G188C189*G210U211C212cWWcWW
82 IL_4P3U_0124P3U0.31210Isolated non-canonical cWW pairD+CRNA (23-mer)G28U29C30*G19U20C21cWWncWwcWW
83 IL_4P3U_0074P3U0.32880Isolated non-canonical cWW pairC+DRNA (23-mer)G5U6C7*G42U43C44cWWncWwcWW
84 IL_5B2P_0015B2P0.36420Isolated non-canonical cWW pairBGuide RNAG48U49A50*U24U25C26cWWcWwcWW
85 IL_4KYY_0034KYY0.31580Isolated non-canonical cWW pairB+ARNA 17-merG5U6U7*A11U12C13cWWcWwcWW
86 IL_4P3T_0064P3T0.28890Isolated non-canonical cWW pairB+ARNA (23-mer)G28U29C30*G19U20C21cWWcWwcWW
87 IL_2OE8_0012OE80.29960Isolated non-canonical cWW pairA+BRNA (16-mer) + RNA (17-mer)G1405U1406C1407*G1494U1495C1496cWWcWwcWW
88 IL_2OE5_0012OE50.30010Isolated non-canonical cWW pairA+BRNA (16-mer) + RNA (17-mer)G1405U1406C1407*G1494U1495C1496cWWcWwcWW
89 IL_3TD0_0063TD00.30930Isolated non-canonical cWW pairA+BRNA (23-mer)G19U20C21*G28U29C30cWWcWwcWW
90 IL_2O3Y_0012O3Y0.33050Isolated non-canonical cWW pairB+ARNA (23-mer)G42U43C44*G5U6C7cWWcWwcWW
91 IL_5ZTM_0025ZTM0.31310Isolated non-canonical cWW pairCnon-coding mRNA sequence roX2G157U158U159*A123U124C125cWWcWwcWW
92 IL_3U4M_0013U4M0.33870Isolated non-canonical cWW pairB LSU rRNAC2179U2180U2181*A2108U2109G2110cWWcWwcWW
93 IL_4JGN_0054JGN0.30850Isolated non-canonical cWW pairERNA (20-mer)C505||||4_555U506||||4_555G507||||4_555*C517U518G519cWWcWwcWW
94 IL_4JGN_0014JGN0.30850Isolated non-canonical cWW pairERNA (20-mer)C505U506G507*C517||||4_555U518||||4_555G519||||4_555cWWcWwcWW
95 IL_4K31_0014K310.33180Isolated non-canonical cWW pairC+BRNA (23-mer)G19U20C21*G5U6C7cWWcWwcWW
96 IL_4K31_0044K310.32410Isolated non-canonical cWW pairB+CRNA (23-mer)G19U20C21*G5U6C7cWWcWwcWW
97 IL_4KYY_0014KYY0.29010Isolated non-canonical cWW pairA+BRNA 17-merG5U6U7*A11U12C13cWWcWwcWW
98 IL_4V88_4464V880.25700Isolated non-canonical cWW pairA6 SSU rRNAG1213U1214C1215*G1448U1449U1450cWWncWwcWW
99 IL_4P3T_0014P3T0.30430Isolated non-canonical cWW pairB+ARNA (23-mer)G42U43C44*G5U6C7cWWncWwcWW
100 IL_7XPL_0017XPL0.31750Isolated non-canonical cWW pairG+HBMG3 RNA strand A + BMG3 RNA strand BC22U23U24*A6U7G8cWWcWwcWW
101 IL_2O3V_0012O3V0.35490Isolated non-canonical cWW pairB+ARNA (23-mer)G42U43C44*G5U6C7cWWcWwcWW
102 IL_2O3X_0042O3X0.39400Isolated non-canonical cWW pairA+BRNA (23-mer)G19U20C21*G28U29C30cWWcWwcWW
103 IL_6SX2_0016SX20.36220Isolated non-canonical cWW pairC+DRNA (19-mer)U9U10A11*U9U10A11cWWncWwcWW
104 IL_5TBW_1155TBW0.36300Isolated non-canonical cWW pair1 LSU rRNAA3040U3041U3042*A3012U3013U3014cWWcWwcWW
105 IL_4V88_3984V880.43860Isolated non-canonical cWW pairA6 SSU rRNAA257C258U259*A206U207U208cWWcWWcWW
106 IL_4V88_4244V880.43540Isolated non-canonical cWW pairA6 SSU rRNAU748U749U750*A799U800G801cWWcWwcWW
107 IL_5J7L_3265J7L0.40910Isolated non-canonical cWW pairDA LSU rRNAU2085U2086G2087*C2232U2233G2234cWWcWwcWW
108 IL_7RQB_0837RQB0.42760Isolated non-canonical cWW pair (H)1A LSU rRNAU2232U2233G2234*C2085U2086G2087cWWcWwcWW
109 IL_7A0S_0787A0S0.42740Isolated non-canonical cWW pairX LSU rRNAU2211U2212G2213*C2068U2069G2070cWWcWwcWW
110 IL_1MZP_0011MZP0.43950Isolated non-canonical cWW pairBfragment of 23S rRNAC50U51U52*A4U5G6cWWcWwcWW
111 IL_8G9Z_0018G9Z0.49880Isolated non-canonical cWW pairESelenocysteine transfer RNAC66||AU67||AU67||A|A*A5||A|BU6||AG7||AcWWcWwcWW
112 IL_3RG5_0023RG50.41800Isolated non-canonical cWW pairBSelenocysteine transfer RNAC66U67U67|||A*A5|||BU6G7cWWcWwcWW
113 IL_4KZD_0034KZD0.41780Isolated non-canonical cWW pairRRNA (84-MER)C66U67C68*G17U18G19cWWcWwcWW
114 IL_7A0S_0117A0S0.43250Isolated non-canonical cWW pairX LSU rRNAA584U585G586*C573C574U575cWWcWWcWW
115 IL_7RQB_0157RQB0.420801A LSU rRNAA575U576G577*C564C565U566cWWcWWcWW
116 IL_5J7L_2575J7L0.43910Isolated non-canonical cWW pairDA LSU rRNAA575U576G577*C564C565U566cWWcWWcWW
117 IL_4WF9_0174WF90.40630Isolated non-canonical cWW pairX LSU rRNAA618U619G620*C607C608U609cWWcWWcWW
118 IL_1ZX7_0061ZX70.38320Isolated non-canonical cWW pairF+ERNA (14-mer)G24U25C26*G10U11C12cWWcWwcWW
119 IL_1ZX7_0041ZX70.30390Isolated non-canonical cWW pairD+CRNA (14-mer)G24U25C26*G10U11C12cWWcWwcWW
120 IL_1T0E_0021T0E0.31110Isolated non-canonical cWW pairC+ARNA (17-mer)G14U15C16*G10||AU11C12cWWcWwcWW
121 IL_4KNQ_0054KNQ0.36430Isolated non-canonical cWW pairBRNA (20-mer)C204||||4_555C205||||4_555G206||||4_555*C216C217G218cWWcwWcWW
122 IL_4KNQ_0014KNQ0.36430Isolated non-canonical cWW pairBRNA (20-mer)C204C205G206*C216||||4_555C217||||4_555G218||||4_555cWWcwWcWW
123 IL_4V9F_0474V9F0.35850Isolated non-canonical cWW pair0 LSU rRNAC1303U1304C1305*G1349U1350G1351cWWcWwcWW
124 IL_5VCI_0015VCI0.45830Isolated non-canonical cWW pairA+BRNA (22-mer) + RNA (12-mer)C1U2G3*C10U11G12cWWcWwcWW
125 IL_4PCJ_0014PCJ0.45370Isolated non-canonical cWW pairAtrCUG-3('5)C1U2G3*C33U34G35cWWcWwcWW
126 IL_5MWI_0015MWI0.38670Isolated non-canonical cWW pairARNA G(CUG)8C duplexC2U3G4*C23||||4_555U24||||4_555G25||||4_555cWWcWwcWW
127 IL_5MWI_0085MWI0.38670Isolated non-canonical cWW pairARNA G(CUG)8C duplexC2||||4_555U3||||4_555G4||||4_555*C23U24G25cWWcWwcWW
128 IL_6E7L_0036E7L0.36480Isolated non-canonical cWW pairARNA (22-mer)C17U18G19*C4||||7_375U5||||7_375G6||||7_375ncWWcWWcWwcWW
129 IL_6E7L_0016E7L0.36480Isolated non-canonical cWW pairARNA (22-mer)C17||||7_375U18||||7_375G19||||7_375*C4U5G6ncWWcWWcWwcWW
130 IL_6CZR_1576CZR0.39210Isolated non-canonical cWW pair1a SSU rRNAG1175U1176C1177*G1044U1045C1046cWWncWwcWW
131 IL_5J7L_0505J7L0.40590Isolated non-canonical cWW pairAA SSU rRNAG1193U1194C1195*G1061U1062C1063cWWcWwcWW
132 IL_4LFB_0474LFB0.37980Isolated non-canonical cWW pairA SSU rRNAG1193U1194C1195*G1061U1062C1063cWWcWwcWW
133 IL_4P43_0014P430.32750Isolated non-canonical cWW pairB+ARNA (23-mer)G42U43C44*G5U6C7cWWcWwcWW
134 IL_4P3U_0064P3U0.33730Isolated non-canonical cWW pairA+BRNA (23-mer)G19U20C21*G28U29C30cWWcWwcWW
135 IL_1MFQ_0021MFQ0.34730Isolated non-canonical cWW pairA SRP RNAG120U121U122*A228U229C230cWWcWwcWW
136 IL_5TBW_1225TBW0.37660Isolated non-canonical cWW pair1 LSU rRNAU3280U3281U3282*A3168U3169A3170cWWcWwcWW
137 IL_4ZC7_0044ZC70.32240Isolated non-canonical cWW pairB+ARNA duplexG28U29C30*G19U20C21cWWncwWcWW
138 IL_4V88_3854V880.33960Isolated non-canonical cWW pairA6 SSU rRNAA471U472A473*U35C36U37cWWcWWcWW
139 IL_1ZZ5_0041ZZ50.30100Isolated non-canonical cWW pairC+DRNA (15-mer) + RNA (14-mer)G10U11C12*G24U25C26cWWncWwcWW
140 IL_1ZZ5_0021ZZ50.28650Isolated non-canonical cWW pairA+BRNA (15-mer) + RNA (14-mer)G10U11C12*G24U25C26cWWncWwcWW
141 IL_7KJT_0017KJT0.30840Isolated non-canonical cWW pairA tRNAG2C3C4*G69C70C71cWWncWW
142 IL_5J7L_2735J7L0.39460Isolated non-canonical cWW pairDA LSU rRNAA905U906G907*U870U871U872cWWcWwcWW
143 IL_4V88_4334V880.38760Isolated non-canonical cWW pairA6 SSU rRNAU917U918A919*U893U894G895ncWWcWwcWW
144 IL_5Z1I_0045Z1I0.36040Isolated non-canonical cWW pairARNA (21-mer)G5||||8_555U6||||8_555C7||||8_555*G19U20C21cWWcWwcWW
145 IL_5Z1I_0015Z1I0.36040Isolated non-canonical cWW pairARNA (21-mer)G5U6C7*G19||||8_555U20||||8_555C21||||8_555cWWcWwcWW
146 IL_4P43_0044P430.29480Isolated non-canonical cWW pairB+ARNA (23-mer)G28U29C30*G19U20C21cWWcWwcWW
147 IL_3TD0_0013TD00.36360Isolated non-canonical cWW pairA+BRNA (23-mer)G5U6C7*G42U43C44cWWncWwcWW
148 IL_4ZC7_0014ZC70.33620Isolated non-canonical cWW pairA+BRNA duplexG5U6C7*G42U43C44cWWncwWcWW
149 IL_8AMI_0018AMI0.32730Other ILB+ARNA (9-mer)U4G5||AG6*U4G5G6cWWcWW
150 IL_5E81_3715E810.26890Self complementary1K tRNAA41A42U43*G27U28U29cWWcWWncWW
151 IL_4KNQ_0044KNQ0.28860Isolated non-canonical cWW pairBRNA (20-mer)C213C214G215*C207||||4_555C208||||4_555G209||||4_555cWWcWW
152 IL_4KNQ_0024KNQ0.28860Isolated non-canonical cWW pairBRNA (20-mer)C213||||4_555C214||||4_555G215||||4_555*C207C208G209cWWcWW
153 IL_4E48_0064E480.32050Isolated non-canonical cWW pairA+BRNA (20-mer)C17U18G19*C22U23G24cWWncWwcWW
154 IL_4JGN_0024JGN0.23300Isolated non-canonical cWW pairERNA (20-mer)C514||||4_555U515||||4_555G516||||4_555*C508U509G510cWWncWwcWW
155 IL_4JGN_0044JGN0.23300Isolated non-canonical cWW pairERNA (20-mer)C514U515G516*C508||||4_555U509||||4_555G510||||4_555cWWncWwcWW
156 IL_3MEI_0023MEI0.22510Isolated non-canonical cWW pairA+BRNA (23-mer)G8C9C10*G13C14C15cWWncBWcWW
157 IL_5CCB_0015CCB0.19500Isolated non-canonical cWW pairN tRNAA37A38U39*A31C32U33cWWcWWcWW
158 IL_1KFO_0031KFO0.19160Isolated non-canonical cWW pairARNA (19-mer)G11A12G13*C6||||8_555C7||||8_555U8||||8_555cWWcWWcWW
159 IL_1KFO_0021KFO0.19160Isolated non-canonical cWW pairARNA (19-mer)G11||||8_555A12||||8_555G13||||8_555*C6C7U8cWWcWWcWW
160 IL_6IA2_0016IA20.17340Isolated non-canonical cWW pairA+BRNA (19-mer)G2A3G4*C16C17C18cWWcWWcWW
161 IL_7MLW_0017MLW0.18590Isolated non-canonical cWW pairFGuanidine-I riboswitchU4C5G6*C57A58A59cWWcWWacWW
162 IL_4V88_4174V880.21250Isolated non-canonical cWW pairA6 SSU rRNAA973A974C975*G624C625U626cWWcWWcWW
163 IL_6OL3_0026OL30.17730Isolated non-canonical cWW pairC VA RNAG53A54C55*G78C79C80cWWcWWcWW
164 IL_5TBW_0795TBW0.17540Isolated non-canonical cWW pair1 LSU rRNAA2106A2107C2108*G1940C1941U1942cWWcWWcWW
165 IL_1Z7F_0021Z7F0.16390Isolated non-canonical cWW pairARNA (16-mer)A10A11U12*A5||||6_765C6||||6_765U7||||6_765cWWcWWcWW
166 IL_6IA2_0046IA20.19500Isolated non-canonical cWW pairA+BRNA (19-mer)G11A12G13*C7C8C9cWWcWWcWW
167 IL_4P3T_0054P3T0.23961Isolated non-canonical cWW pairA+BRNA (23-mer)G16A18G19*C30C31C32cWWcWWcWW
168 IL_1YZ9_0021YZ90.23630Isolated non-canonical cWW pairE+FRNA (11-mer)A4C5U6*A15C16U17cWWncBWcWW
169 IL_1YZ9_0011YZ90.24950Isolated non-canonical cWW pairD+CRNA (11-mer)A15C16U17*A4C5U6cWWncBWcWW
170 IL_5MWI_0065MWI0.24030Isolated non-canonical cWW pairARNA G(CUG)8C duplexC8||||4_555U9||||4_555G10||||4_555*C17U18G19cWWcWW
171 IL_5MWI_0035MWI0.24030Isolated non-canonical cWW pairARNA G(CUG)8C duplexC8U9G10*C17||||4_555U18||||4_555G19||||4_555cWWcWW
172 IL_4E48_0054E480.22180Isolated non-canonical cWW pairB+ARNA (20-mer)C25U26G27*C14U15G16cWWcWW
173 IL_3GM7_0013GM70.24790Isolated non-canonical cWW pairG+HRNA (18-mer)C1U2G3*C16U17G18cWWcWW
174 IL_2ZKO_0012ZKO0.23230Isolated non-canonical cWW pairC+DRNA (21-mer)U9U10A11*U9U10A11cWWcWW
175 IL_3GM7_0053GM70.25430Isolated non-canonical cWW pairH+GRNA (18-mer)C4U5G6*C13U14G15cWWcWW
176 IL_5MWI_0055MWI0.27010Isolated non-canonical cWW pairARNA G(CUG)8C duplexC11||||4_555U12||A||4_555G13||||4_555*C14U15||AG16cWWcWW
177 IL_5MWI_0045MWI0.27010Isolated non-canonical cWW pairARNA G(CUG)8C duplexC11U12||AG13*C14||||4_555U15||A||4_555G16||||4_555cWWcWW
178 IL_1RPU_0011RPU0.29460Isolated non-canonical cWW pairD+CRNA (21-mer)U9||AC10||AA11||A*U9||AC10||AA11||AcWWncBWcWW
179 IL_1M5K_0041M5K0.28360Isolated cWH basepairBRNA HAIRPIN RIBOZYMEG72G73G74*C79U80U81ncWWcWW
180 IL_7Y2B_0037Y2B0.27560Isolated non-canonical cWW pairSRNA (13-mer)C3||||5_555U4||||5_555G5||||5_555*C9U10G11cWWcWW
181 IL_7Y2B_0017Y2B0.27560Isolated non-canonical cWW pairSRNA (13-mer)C3U4G5*C9||||5_555U10||||5_555G11||||5_555cWWcWW
182 IL_1NBS_0061NBS0.28140B RNase P class BG125G126C127*G116U117C118cWWncWWcWW
183 IL_7VYX_0017VYX0.31270Isolated non-canonical cWW pairCsgRNAG11A12C13*G53C54C55cWWncWWancWW
184 IL_4V9K_0644V9K0.24930Isolated non-canonical cWW pairAW tRNAC50A51G52*C62C63G64cWWncWWacWW
185 IL_5TBW_1125TBW0.26780Isolated non-canonical cWW pair1 LSU rRNAG2918A2919U2920*A2926C2927C2928cWWcWWcWW
186 IL_5Y7M_0075Y7M0.21290Isolated non-canonical cWW pairDRNA (52-MER)G37A38U39*A11C12C13cWWcWWcWW
187 IL_6M6R_0016M6R0.25160Isolated non-canonical cWW pairBRNA (8-mer)G2C3C4*G5||||7_555C6||||7_555C7||||7_555cWWcWW
188 IL_6M6R_0026M6R0.25160Isolated non-canonical cWW pairBRNA (8-mer)G2||||7_555C3||||7_555C4||||7_555*G5C6C7cWWcWW
189 IL_4V9F_1054V9F0.23590Isolated non-canonical cWW pair9 5S rRNAC72A73G74*C107C108G109cWWcWWcWW
190 IL_4E59_0014E590.21630Isolated non-canonical cWW pairA+BRNA duplex containing CCG repeatsC2C3G4*C2C3G4cWWncBWcWW
191 IL_3GM7_0023GM70.23500Isolated non-canonical cWW pairH+GRNA (18-mer)C13U14G15*C4U5G6cWWcWW
192 IL_3GM7_0043GM70.30420Isolated non-canonical cWW pairH+GRNA (18-mer)C7U8G9*C10U11G12cWWncWwcWW
193 IL_5MWI_0075MWI0.27730Isolated non-canonical cWW pairARNA G(CUG)8C duplexC5||||4_555U6||||4_555G7||||4_555*C20U21G22cWWcWW
194 IL_5MWI_0025MWI0.27730Isolated non-canonical cWW pairARNA G(CUG)8C duplexC5U6G7*C20||||4_555U21||||4_555G22||||4_555cWWcWW
195 IL_5VCI_0025VCI0.27080Isolated non-canonical cWW pairA+BRNA (22-mer) + RNA (12-mer)C4U5G6*C7U8G9cWWncWwcWW
196 IL_3GM7_0033GM70.29090Isolated non-canonical cWW pairG+HRNA (18-mer)C7U8G9*C10U11G12cWWncWwcWW
197 IL_3GM7_0063GM70.26460Isolated non-canonical cWW pairH+GRNA (18-mer)C1U2G3*C16U17G18cWWncWwcWW
198 IL_3SZX_0013SZX0.29370Isolated non-canonical cWW pairB+ARNA (19-mer)C13U14G15*C7U8G9cWWcWW
199 IL_4E48_0034E480.26710Isolated non-canonical cWW pairB+ARNA (20-mer)C31U32G33*C8U9G10cWWcWW
200 IL_4E48_0024E480.28450Isolated non-canonical cWW pairA+BRNA (20-mer)C5U6G7*C34U35G36cWWcWW
201 IL_4E48_0014E480.30560Isolated non-canonical cWW pairB+ARNA (20-mer)C37U38G39*C2U3G4cWWcWW
202 IL_4E48_0044E480.30380Isolated non-canonical cWW pairA+BRNA (20-mer)C11U12G13*C28U29G30cWWncWwcWW
203 IL_1UN6_0051UN60.32480Isolated non-canonical cWW pairF5S RIBOSOMAL RNAC95U96G97*C79U80G81cWWncWwcWW
204 IL_5AOX_0015AOX0.26790Isolated non-canonical cWW pairCALU JO CONSENSUS RNAC18A19C20*G9C10G11cWWcWWcWW
205 IL_1U9S_0071U9S0.25400Isolated non-canonical cWW pairARIBONUCLEASE PC191A192C193*G177C178G179cWWcWWcWW
206 IL_5Y85_0065Y850.21530Isolated non-canonical cWW pairC+DRNA (18-mer) + DNA/RNA (50-MER)G13A14C15*G4C5C6cWWcWWcWW
207 IL_4V8Q_1884V8Q0.30710BY SsrAU56U57G58*C20A21G22ncWWncWWcWW
208 IL_5D0B_0015D0B0.32350Isolated non-canonical cWW pairFRNA (17-mer)A37A38U39*A31C32U33cWWcWWcWW
209 IL_4V88_4654V880.37480Isolated non-canonical cWW pairA6 SSU rRNAG1642U1643C1644*G1757U1758C1759cWWcWW
210 IL_7ECP_0027ECP0.38000Isolated non-canonical cWW pairB+ARNA (12-mer)G3C4C5*G8U9C10cWWcWWcWW
211 IL_7ECP_0017ECP0.29610Isolated non-canonical cWW pairB+ARNA (12-mer)G8U9C10*G3C4C5cWWcWWcWW
212 IL_3LA5_0013LA50.25390APurine riboswitchU16U17C18*G78G79A80cWWncWWcWW
213 IL_4WF9_0834WF90.24100Isolated non-canonical cWW pairX LSU rRNAC2111C2112U2113*A2260A2261G2262cWWncWWacWW
214 IL_4V9F_0174V9F0.31600Isolated non-canonical cWW pair0 LSU rRNAC558U559U560*A597C598G599cWWcWWcWW
215 IL_3RW6_0043RW60.36390Isolated non-canonical cWW pairHconstitutive transport element(CTE)of Mason-Pfizer monkey virus RNAC33U34G35*C24C25G26cWWcWWcWW
216 IL_5TBW_0085TBW0.32250Isolated non-canonical cWW pair1 LSU rRNAC125U126G127*C141C142G143cWWcWWcWW
217 IL_4V9F_0234V9F0.25910Isolated non-canonical cWW pair0 LSU rRNAC899U900G901*C763C764G765cWWcWWcWW
218 IL_4V88_4754V880.36120A6 SSU rRNAU1684G1685C1686*G1715C1716G1717cWWncWWcWW
219 IL_4V83_2354V830.41950Isolated non-canonical cWW pairCVdomain 3 of PSIC IGR IRES RNAG6173U6174G6175*C6153U6154C6155cWWncwWcWW
220 IL_6CZR_1226CZR0.40040Isolated non-canonical cWW pair1a SSU rRNAG196U197G198*C181C182C183cWWcWWncWW
221 IL_6CZR_1716CZR0.38910Isolated non-canonical cWW pair1a SSU rRNAG1442C1443C1444*G1418U1419C1420cWWncWWcWW
222 IL_4LFB_0634LFB0.35030Isolated non-canonical cWW pairA SSU rRNAG1464C1465C1466*G1435U1436C1437cWWcWWcWW
223 IL_4LFB_0104LFB0.31930Isolated non-canonical cWW pairA SSU rRNAC186C187C188*G190|||KU190|||LG191cWWcWWcWW
224 IL_5TBW_0465TBW0.34460Isolated non-canonical cWW pair1 LSU rRNAA1120U1121U1122*A1136C1137U1138cWWcWWcWW
225 IL_5TBW_0215TBW0.27760Isolated non-canonical cWW pair1 LSU rRNAG792C793U794*G668U669C670cWWcWWcWW
226 IL_7A0S_0207A0S0.26840Isolated non-canonical cWW pairX LSU rRNAG767U768C769*G754C755C756cWWcWWcWW
227 IL_7RQB_0177RQB0.269801A LSU rRNAC806U807G808*C672C673G674cWWcWWcWW
228 IL_5J7L_2595J7L0.27380Isolated non-canonical cWW pairDA LSU rRNAC806U807G808*C672C673G674cWWcWWcWW
229 IL_4WF9_0204WF90.24070Isolated non-canonical cWW pairX LSU rRNAC851U852G853*C717C718G719cWWcWWcWW
230 IL_7A0S_0147A0S0.25420Isolated non-canonical cWW pairX LSU rRNAC819U820A821*U685C686G687cWWcWWcWW
231 IL_5TBW_0275TBW0.26110Isolated non-canonical cWW pair1 LSU rRNAC938U939G940*C803C804G805cWWcWWcWW
232 IL_5TBW_1035TBW0.25690Isolated non-canonical cWW pair1 LSU rRNAG2824C2825U2826*G2863A2864U2865cWWcWWacWW
233 IL_5TBW_0445TBW0.35530Isolated non-canonical cWW pair1 LSU rRNAG1087U1088G1089*C1069U1070U1071cWWncWwcWW
234 IL_4V84_0714V840.26330AVRNA (34-MER)G6192U6193C6194*G6183A6184U6185ncWWcWWncWWcWW
235 IL_1N33_0701N330.23610Z+YA-SITE MESSENGER RNA FRAGMENTU1U2U3*G34G35A36cWWncWWacWW
236 IL_5E81_3765E810.262303L tRNAG27U28U29*A41A42U43ncWWncWWcWW
237 IL_4AOB_0054AOB0.21040Isolated non-canonical cWW pairA SAM-I riboswitchC78G79U80*G71A72G73cWWncWWcWW
238 IL_4M6D_0114M6D0.32750Isolated non-canonical cWW pairHaptamerG46A47C48*G12G13C14ncWWcWWcWW
239 IL_5UNE_0065UNE0.42110Isolated non-canonical cWW pairB+ARNA (47-MER)U16A17G18*C27A28G29cWWcWwcWW
240 IL_4M4O_0014M4O0.30960Isolated non-canonical cWW pairBRNA (59-MER)A52C53G54*C6A7U8cWWcWWacWW
241 IL_5VSU_0025VSU0.48530I U6 snRNAC66C67C68*G78A79G81cWWcWWacWW

3D structures

Complete motif including flanking bases
SequenceCounts
GUC*GUC42
CUG*CUG37
GAG*CCC8
CCG*CCG8
CUG*CCG7
GCC*GCC6
CUU*AUG6
AAU*ACU5
GAC*GCC5
GAC*GGC4
ACU*ACU4
GUU*AUC4
AUG*CCU4
GGG*CAC3
CAC*GCG3
CUC*GUG3
UUG*CUG3
GCC*GUC3
AAC*GGU2
CAU*GGG2
CGG*CAG2
GGC*GGC2
GAC*GAC2
CAG*CAG2
UAG*CAG2
UCC*GAG2
UCA*UCA2
UUU*AUA2
GUG*CUC2
GGC*GUC2
UUA*UUA2
GAG*CCU2
AAC*GCU2
CAG*CCG2
GAU*ACC2
GUC*GCC2
CUAC*GAG1
CAC*GAGG1
GAC*GCAGC1
UAU*AGG1
CAU*AGUG1
CAC*GGAG1
CAC*GGG1
UAG*CGA1
GAU*AGC1
UAU*AGA1
UAC*GAA1
ACG*CCU1
CGG*CGG1
UGG*CAA1
UGC*GUG1
CCU*ACG1
GGG*CUC1
GGA*UUC1
CAA*UCG1
GUA*UUC1
GUC*GUU1
AUU*AUU1
ACU*AUU1
UUU*AUG1
AUA*UCU1
AUG*UUU1
UUA*UUG1
UGG*UGG1
AAU*GUU1
UCG*CAA1
GAAG*CCC1
GGG*CUU1
UUG*CAG1
UUC*GGA1
CCU*AAG1
CUU*ACG1
UGC*GCG1
GUG*CCC1
CCC*GUG1
AUU*ACU1
GCU*GUC1
CUA*UCG1
GCU*GAU1
GUG*CUU1
GUC*GAU1
UUU*GGA1
GUU*AAU1
CGU*GAG1
ACG*CAU1
CCC*GAG1
Non-Watson-Crick part of the motif
SequenceCounts
U*U108
A*C30
C*C22
U*C18
A*G13
G*A7
A*A7
C*A7
G*U6
C*U6
G*G4
U*A3
U*G2
UA*A1
A*AG1
A*CAG1
A*GU1
A*GA1
A*U1
AA*C1
G*C1

Release history

Release3.773.783.79
Date2023-12-062024-01-032024-01-03
StatusNew id, > 2 parentsExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Isolated non-canonical cWW pair (222)
  • (13)
  • Isolated cWH basepair (2)
  • Isolated non-canonical cWW pair (H) (2)
  • Self complementary (1)
  • Other IL (1)
    • Basepair signature
    cWW-cWW-cWW
    Heat map statistics
    Min 0.00 | Avg 0.31 | Max 0.74
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