5GMK Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_5GMK_002 | 1/D/91:103 | No text annotation | ||
| HL_5GMK_004 | 1/E/70:76 | GNRA | homologous HL_6ASO_001 HL_34789.4 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_5GMK_001 | No text annotation | ||
| HL_5GMK_003 | No text annotation | ||
| HL_5GMK_005 | No text annotation | ||
| HL_5GMK_006 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_5GMK_001 | 1/D/32:34, 1/D/120:121 | No text annotation | ||
| IL_5GMK_002 | 1/D/80:84, 1/D/110:112 | No text annotation | ||
| IL_5GMK_003 | 1/E/58:59, 1/L/23:26 | No text annotation | geometric IL_9E6Q_098 IL_44609.2 | |
| IL_5GMK_004 | 1/E/65:67, 1/E/81:82 | No text annotation | geometric IL_9DE7_001 IL_05642.3 | |
| IL_5GMK_005 | 1/E/67:68, 1/E/78:81 | No text annotation | geometric IL_4WF9_096 IL_44609.2 | |
| IL_5GMK_006 | 1/L/34:35, 1/M/500:502 | Multiple bulged bases | geometric IL_5WLH_001 IL_71421.3 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_5GMK_007 | Single stack bend | ||
| IL_5GMK_008 | No text annotation | ||
| IL_5GMK_009 | No text annotation | ||
| IL_5GMK_010 | No text annotation | ||
| IL_5GMK_011 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_5GMK_001 | 1/D/40:46, 1/D/69:79, 1/D/113:114 | No text annotation | ||
| J3_5GMK_003 | 1/E/61:63, 1/E/84:93, 1/L/12:21 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_5GMK_002 | No text annotation |
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