Description:
Sarcin-ricin Parent Motif - bacterial LSU H95 IL
Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-cWW
Free text annotation:
Has only one non-WC pair (tSH) between tHH and cWW.
Intraclusteral linkage
Min 0.08 | Avg 0.25 | Max 0.46
Help
#D - ordering by discrepancy relative to the exemplar, #S - ordering by similarity (same as in the heat map). More
#D#SLoop idPDBDisc 1 2 3 4 5 6 7break 8 9 10 11 12 131-121-132-112-123-43-114-55-106-97-8
194V190.0000A73A74A75G76U77A78U79*A87G88A89A90A91U92cWWtSHtHHcSHtWHtHScWW
2103J7Y0.0952A1739A1740A1741G1742U1743A1744U1745*A1753G1754A1755A1756A1757U1758cWWtSHtHHcSHtWHtHScWW
3145J7L0.1462C239C240A241G242U243A244G245*C253G254A255A256C257G258cWWtSHtHHcSHtWHtHScWW
4111S720.1534G75G76A77G78U79A80C81*G101G102A103A104A105C106cWWtSHtHHcSHtWHtHScWW
573J790.1584G1593A1594A1595G1596U1597A1598G1599*C2647G2648A2649A2650A2651C2652cWWtSHtHHcSHtWHtHScWW
684V9F0.1696A2689U2690A2691G2692U2693A2694C2695*G2700G2701A2702A2703C2704U2705cWWtSHtHHcSHtWHtHScWW
764V910.1761G1444U1445A1446G1447U1448A1449G1450*C2354G2355A2356A2357A2358C2359cWWtSHncSStHHcSHtWHtHScWW
8135A2Q0.1823C255G256A257G258U259A260G261*C272G273A274A275A276G277cWWtSHtHHcSHtWHtHScWW
954V880.1867G1444U1445A1446G1447U1448A1449G1450*C2354G2355A2356A2357A2358C2359cWWtSHncSStHHcSHtWHtHScWW
1035AJ00.1882G2337U2338A2339G2340U2341A2342G2343*C3829G3830A3831A3832A3833C3834cWWntSHtSHtHHcSHtWHtHScWW
11121NBS0.1997U165G166A167G168U169A170U171*A138A139A140A141A142A143cWWtSHtHHcSHntWHtHScWW
12165FDU0.2059U228G229A230G231U232A233G234*C242G243A244A245A246G247cWWtSHtHHcSHtWHtHScWW
1344V8P0.2080G1470U1471A1472G1473U1474A1475G1476*C2349G2350A2351A2352C2353C2354cWWtSHncSStHHcSHtWHtHScWW
1424V9F0.2118A1367U1368A1369G1370U1371A1372G1373*U2052G2053A2054A2055C2056U2057cWWtSHtHHcSHtWHtHScWW
15154V9F0.2152U210U211A212G213U214A215A216*U224G225A226A227C228G229cWWtSHtHHcSHtWHtHScWW
1613J7P0.2562G2358U2359A2360G2361U2362A2363G2364*C3858G3859A3860A3861A3862C3863ncWWncWWntWHntSHntHHcSHtWHtHScWW
17174V9F0.2893C585C586A587G588U589A590A591*U567G568A569C570C571G572cWWntHHcSHtWHtHScWW
18205J7L0.3320C2652U2653A2654G2655U2656A2657C2658*G2663G2664A2665C2666C2667G2668cWWncSWntHHcSHtWHtHScWW
19194IOA0.3505C2631U2632A2633G2634U2635A2636C2637*G2642G2643A2644C2645C2646G2647cWWncSWntHHcSHtWHtHScWW
20183J9W0.3673U2681U2682A2683G2684U2685A2686C2687*G2692G2693A2694C2695C2696G2697cWWncSScSHtWHtHScWW
21215FDU0.3767C2664U2665A2666G2667U2668A2669C2670*G2675G2676A2677C2678C2679G2680cWWncSWncSScSHtWHtHScWW

3D structures

Complete motif including flanking bases
SequenceCounts
GUAGUAG*CGAAAC4
CUAGUAC*GGACCG3
AAAGUAU*AGAAAU2
AUAGUAG*UGAACU1
CCAGUAA*UGACCG1
UUAGUAC*GGACCG1
GUAGUAG*CGAACC1
UUAGUAA*UGAACG1
UGAGUAU*AAAAAA1
GGAGUAC*GGAAAC1
CCAGUAG*CGAACG1
GAAGUAG*CGAAAC1
AUAGUAC*GGAACU1
CGAGUAG*CGAAAG1
UGAGUAG*CGAAAG1
Non-Watson-Crick part of the motif
SequenceCounts
UAGUA*GACC4
UAGUA*GAAA4
UAGUA*GAAC4
AAGUA*GAAA3
GAGUA*GAAA3
CAGUA*GAAC1
GAGUA*AAAA1
CAGUA*GACC1

Release history

Release2.0
Date2017-04-24
StatusNew id, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Coloring options:

Mutual discrepancy heat map legend: