IL_29698.1

#S	Loop id	PDB	Disc	Annotation	Chain(s)	Standardized name		1		2		3		4		5		6		7	break		8		9		10		11		12		13	1-12	1-13	2-11	2-12	3-4	3-11	4-5	5-10	6-9	7-8
1	IL_3J7P_080➜	3J7P	0.2562		5	LSU rRNA	G	2358	U	2359	A	2360	G	2361	U	2362	A	2363	G	2364	*	C	3858	G	3859	A	3860	A	3861	A	3862	C	3863	ncWW	ncWW	ntWH	ntSH		ntHH	cSH	tWH	tHS	cWW
2	IL_4V9F_049➜	4V9F	0.2118	7x6 Sarcin-Ricin; G-bulge	0	LSU rRNA	A	1367	U	1368	A	1369	G	1370	U	1371	A	1372	G	1373	*	U	2052	G	2053	A	2054	A	2055	C	2056	U	2057		cWW		tSH		tHH	cSH	tWH	tHS	cWW
3	IL_5AJ0_097➜	5AJ0	0.1882		A2	LSU rRNA	G	2337	U	2338	A	2339	G	2340	U	2341	A	2342	G	2343	*	C	3829	G	3830	A	3831	A	3832	A	3833	C	3834		cWW	ntSH	tSH		tHH	cSH	tWH	tHS	cWW
4	IL_4V8P_366➜	4V8P	0.2080		F1	LSU rRNA	G	1470	U	1471	A	1472	G	1473	U	1474	A	1475	G	1476	*	C	2349	G	2350	A	2351	A	2352	C	2353	C	2354		cWW		tSH	ncSS	tHH	cSH	tWH	tHS	cWW
5	IL_4V88_307➜	4V88	0.1867		A5	LSU rRNA	G	1444	U	1445	A	1446	G	1447	U	1448	A	1449	G	1450	*	C	2354	G	2355	A	2356	A	2357	A	2358	C	2359		cWW		tSH		tHH	cSH	tWH	tHS	cWW
6	IL_4V91_067➜	4V91	0.1761		1	LSU rRNA	G	1444	U	1445	A	1446	G	1447	U	1448	A	1449	G	1450	*	C	2354	G	2355	A	2356	A	2357	A	2358	C	2359		cWW		tSH	ncSS	tHH	cSH	tWH	tHS	cWW
7	IL_3J79_059➜	3J79	0.1584		A	LSU rRNA	G	1593	A	1594	A	1595	G	1596	U	1597	A	1598	G	1599	*	C	2647	G	2648	A	2649	A	2650	A	2651	C	2652		cWW		tSH		tHH	cSH	tWH	tHS	cWW
8	IL_4V9F_092➜	4V9F	0.1696	Sarcin-Ricin target in LSU H95; G-bulge	0	LSU rRNA	A	2689	U	2690	A	2691	G	2692	U	2693	A	2694	C	2695	*	G	2700	G	2701	A	2702	A	2703	C	2704	U	2705		cWW		tSH		tHH	cSH	tWH	tHS	cWW
9	IL_4V19_005➜	4V19	0.0000		A	LSU rRNA	A	73	A	74	A	75	G	76	U	77	A	78	U	79	*	A	87	G	88	A	89	A	90	A	91	U	92		cWW		tSH		tHH	cSH	tWH	tHS	cWW
10	IL_3J7Y_002➜	3J7Y	0.0952		A	LSU rRNA	A	1739	A	1740	A	1741	G	1742	U	1743	A	1744	U	1745	*	A	1753	G	1754	A	1755	A	1756	A	1757	U	1758		cWW		tSH		tHH	cSH	tWH	tHS	cWW
11	IL_1S72_103➜	1S72	0.1534		9	5S rRNA	G	75	G	76	A	77	G	78	U	79	A	80	C	81	*	G	101	G	102	A	103	A	104	A	105	C	106		cWW		tSH		tHH	cSH	tWH	tHS	cWW
12	IL_1NBS_007➜	1NBS	0.1997	7x6 Sarcin-Ricin; G-bulge	B	RNase P class B	U	165	G	166	A	167	G	168	U	169	A	170	U	171	*	A	138	A	139	A	140	A	141	A	142	A	143		cWW		tSH		tHH	cSH	ntWH	tHS	cWW
13	IL_5A2Q_103➜	5A2Q	0.1823		3	IRES	C	255	G	256	A	257	G	258	U	259	A	260	G	261	*	C	272	G	273	A	274	A	275	A	276	G	277		cWW		tSH		tHH	cSH	tWH	tHS	cWW
14	IL_5J7L_251➜	5J7L	0.1462	7x6 Sarcin-Ricin; G-bulge	DA	LSU rRNA	C	239	C	240	A	241	G	242	U	243	A	244	G	245	*	C	253	G	254	A	255	A	256	C	257	G	258		cWW		tSH		tHH	cSH	tWH	tHS	cWW
15	IL_4V9F_007➜	4V9F	0.2152	7x6 Sarcin-Ricin; G-bulge	0	LSU rRNA	U	210	U	211	A	212	G	213	U	214	A	215	A	216	*	U	224	G	225	A	226	A	227	C	228	G	229		cWW		tSH		tHH	cSH	tWH	tHS	cWW
16	IL_5FDU_007➜	5FDU	0.2059		1A	LSU rRNA	U	228	G	229	A	230	G	231	U	232	A	233	G	234	*	C	242	G	243	A	244	A	245	A	246	G	247		cWW		tSH		tHH	cSH	tWH	tHS	cWW
17	IL_4V9F_019➜	4V9F	0.2893	7x6 Sarcin-Ricin; G-bulge	0	LSU rRNA	C	585	C	586	A	587	G	588	U	589	A	590	A	591	*	U	567	G	568	A	569	C	570	C	571	G	572		cWW				ntHH	cSH	tWH	tHS	cWW
18	IL_3J9W_171➜	3J9W	0.3673		BA	LSU rRNA	U	2681	U	2682	A	2683	G	2684	U	2685	A	2686	C	2687	*	G	2692	G	2693	A	2694	C	2695	C	2696	G	2697		cWW			ncSS		cSH	tWH	tHS	cWW
19	IL_4IOA_096➜	4IOA	0.3505	Sarcin-Ricin target in LSU H95; G-bulge	X	LSU rRNA	C	2631	U	2632	A	2633	G	2634	U	2635	A	2636	C	2637	*	G	2642	G	2643	A	2644	C	2645	C	2646	G	2647		cWW		ncSW		ntHH	cSH	tWH	tHS	cWW
20	IL_5J7L_346➜	5J7L	0.3320	Sarcin-Ricin target in LSU H95; G-bulge	DA	LSU rRNA	C	2652	U	2653	A	2654	G	2655	U	2656	A	2657	C	2658	*	G	2663	G	2664	A	2665	C	2666	C	2667	G	2668		cWW		ncSW		ntHH	cSH	tWH	tHS	cWW
21	IL_5FDU_104➜	5FDU	0.3767		1A	LSU rRNA	C	2664	U	2665	A	2666	G	2667	U	2668	A	2669	C	2670	*	G	2675	G	2676	A	2677	C	2678	C	2679	G	2680		cWW		ncSW	ncSS		cSH	tWH	tHS	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GUAGUAG*CGAAAC	4
CUAGUAC*GGACCG	3
AAAGUAU*AGAAAU	2
UUAGUAA*UGAACG	1
CCAGUAA*UGACCG	1
UUAGUAC*GGACCG	1
CCAGUAG*CGAACG	1
UGAGUAG*CGAAAG	1
UGAGUAU*AAAAAA	1
GUAGUAG*CGAACC	1
AUAGUAG*UGAACU	1
GAAGUAG*CGAAAC	1
AUAGUAC*GGAACU	1
GGAGUAC*GGAAAC	1
CGAGUAG*CGAAAG	1

Non-Watson-Crick part of the motif

Sequence	Counts
UAGUA*GACC	4
UAGUA*GAAC	4
UAGUA*GAAA	4
GAGUA*GAAA	3
AAGUA*GAAA	3
CAGUA*GACC	1
CAGUA*GAAC	1
GAGUA*AAAA	1

Release history

Release	2.0
Date	2017-04-24
Status	New id, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Motif IL_29698.1 Version IL_29698.1 of this group appears in releases 2.0 to 2.0 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_29698.1 Version IL_29698.1 of this group appears in releases 2.0 to 2.0

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Csv

Json