Motif IL_97217.13 Version IL_97217.13 of this group appears in releases 1.15 to 1.15

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name for chain		1		2	break		3		4	1-4	2-3	2-4
1	IL_4C7O_001	4C7O	0.4100	1	Single bulged U	E	SRP RNA	U	7	C	8	*	G	38	A	40	cWW	cWW
2	IL_3P49_003	3P49	0.4047	1		A	Glycine riboswitch	A	30	C	31	*	G	13	U	15	cWW	cWW
3	IL_1S72_026	1S72	0.4824	1		0	LSU rRNA	A	788	C	789	*	G	856	U	858	cWW	cWW
4	IL_3U5H_030	3U5H	0.4697	1		5	LSU rRNA	A	828	U	829	*	A	895	U	897	cWW	cWW
5	IL_4NVV_040	4NVV	0.4225	1		A	LSU rRNA	G	1195	C	1196	*	G	1057	C	1059	cWW	cWW
6	IL_2QBG_038	2QBG	0.4719	1		B	LSU rRNA	G	1149	C	1150	*	G	1011	C	1013	cWW	cWW
7	IL_3U5H_136	3U5H	0.4226	1		5	LSU rRNA	U	3387	C	3388	*	G	3318	A	3320	cWW	cWW
8	IL_4A1B_036	4A1B	0.4986	1		1	LSU rRNA	A	853	U	854	*	A	920	U	922	cWW	cWW
9	IL_4CUV_149	4CUV	0.4059	2		1	LSU rRNA	C	3349	C	3350	*	G	3353	G	3356	cWW	cWW
10	IL_4NVV_058	4NVV	0.3765	1		A	LSU rRNA	C	1498	C	1499	*	G	1506	G	1508	cWW	cWW
11	IL_3U5F_018	3U5F	0.4454	1		6	SSU rRNA	C	275	C	276	*	G	279	G	281	cWW	cWW
12	IL_4CUV_136	4CUV	0.3695	1		1	LSU rRNA	C	3193	C	3194	*	G	3197	G	3199	cWW	cWW
13	IL_4IOA_016	4IOA	0.3731	1	Single bulged G	X	LSU rRNA	U	715	U	716	*	G	741	A	743	cWW	cWW
14	IL_2QBG_023	2QBG	0.3199	1		B	LSU rRNA	U	702	U	703	*	G	728	A	730	cWW	cWW
15	IL_4CUV_142	4CUV	0.3639	1		1	LSU rRNA	U	3387	C	3388	*	G	3318	A	3320	cWW	cWW
16	IL_1S72_027	1S72	0.3836	1	Single bulged G (H)	0	LSU rRNA	A	793	U	794	*	A	819	U	821	cWW	cWW
17	IL_4NVV_022	4NVV	0.4485	1		A	LSU rRNA	G	749	U	750	*	G	775	C	777	cWW	cWW
18	IL_4CUV_034	4CUV	0.4849	1		1	LSU rRNA	G	833	U	834	*	G	859	C	861	cWW	cWW
19	IL_3SUX_001	3SUX	0.4220	1	Single bulged G	X	THF riboswitch	G	20	C	21	*	G	76	U	78	cWW	cWW
20	IL_4LVZ_002	4LVZ	0.4144	1		A	THF riboswitch	G	17	C	18	*	G	67	U	69	cWW	cWW
21	IL_1VW3_060	1VW3	0.3720	2		A	LSU rRNA	G	1833	C	1834	*	G	1864	U	1867	cWW	cWW
22	IL_1S72_070	1S72	0.3861	2		0	LSU rRNA	G	1974	C	1975	*	G	2005	U	2008	cWW	cWW
23	IL_3U5H_094	3U5H	0.3798	2		5	LSU rRNA	G	2276	C	2277	*	G	2307	U	2310	cWW	cWW
24	IL_4CUV_097	4CUV	0.3431	2		1	LSU rRNA	G	2276	C	2277	*	G	2307	U	2310	cWW	cWW
25	IL_4A1B_101	4A1B	0.3811	1		1	LSU rRNA	G	2603	U	2604	*	A	2614	U	2616	cWW	cWW
26	IL_2QBG_070	2QBG	0.4131	1		B	LSU rRNA	G	1770	C	1771	*	G	1980	U	1982	cWW	cWW
27	IL_4IOA_064	4IOA	0.4541	1	Single bulged A	X	LSU rRNA	G	1761	C	1762	*	G	1963	U	1965	cWW	cWW
28	IL_4CUV_158	4CUV	0.3823	1		4	5.8S rRNA	G	68	U	69	*	A	89	C	91	cWW	cWW
29	IL_3U5H_152	3U5H	0.3757	1		8	5.8S rRNA	G	68	U	69	*	A	89	C	91	cWW	cWW
30	IL_1VW3_091	1VW3	0.4078	2		A	LSU rRNA	G	3259	U	3260	*	A	3123	C	3126	cWW	cWW
31	IL_4A1C_002	4A1C	0.3270	1		2	5.8S rRNA	G	71	C	72	*	G	90	C	92	cWW	cWW
32	IL_4IOA_011	4IOA	0.3398	1	Single bulged A	X	LSU rRNA	G	678	C	679	*	G	600	C	602	cWW	cWW
33	IL_3SNP_001	3SNP	0.3428	1		C	IRE	A	24	C	25	*	G	7	U	9	cWW	cWW
34	IL_1DUQ_002	1DUQ	0.2770	1	Single bulged A	A+B	THE REV BINDING ELEMENT	G	108	C	109	*	G	120	C	122	cWW	cWW
35	IL_1CSL_002	1CSL	0.3013	1	Single bulged A	A+B	RNA (13-mer) + RNA (15-mer)	G	50	C	51	*	G	67	C	69	cWW	cWW
36	IL_4BPP_030	4BPP	0.3029	1		A	SSU rRNA	G	580	C	581	*	G	550	C	552	cWW	cWW
37	IL_2OIU_003	2OIU	0.2693	1	Single bulged U	Q	L1 Ribozyme RNA Ligase	A	41	C	42	*	G	18	U	20	cWW	cWW
38	IL_3W3S_001	3W3S	0.2950	1	Single bulged C	B	Selenocysteine transfer RNA	G	23	C	24	*	G	11	C	12	cWW	cWW
39	IL_4BPP_072	4BPP	0.2769	1		A	SSU rRNA	U	1322	C	1323	*	G	1343	A	1345	cWW	cWW
40	IL_4CUV_016	4CUV	0.3316	1		1	LSU rRNA	A	204	C	205	*	G	189	U	191	cWW	cWW
41	IL_1S72_014	1S72	0.2614	1	Single bulged U (H)	0	LSU rRNA	G	322	C	323	*	G	307	C	309	cWW	cWW
42	IL_3U5F_031	3U5F	0.3147	1		6	SSU rRNA	G	586	C	587	*	G	557	C	559	cWW	cWW
43	IL_2OIU_001	2OIU	0.2494	1		P	L1 Ribozyme RNA Ligase	A	41	C	42	*	G	18	U	20	cWW	cWW
44	IL_1NBS_001	1NBS	0.2748	1	Single bulged A (H)	A	RNase P class B	G	113	C	114	*	G	129	C	131	cWW	cWW
45	IL_4CUV_134	4CUV	0.2220	1		1	LSU rRNA	A	3210	C	3211	*	G	3177	U	3179	cWW	cWW
46	IL_3OWZ_005	3OWZ	0.2138	1	Single bulged A (H)	B	Glycine riboswitch	U	27	C	28	*	G	12	A	14	cWW	cWW
47	IL_1NBS_005	1NBS	0.1942	1	Single bulged A	B	RNase P class B	G	113	C	114	*	G	129	C	131	cWW	cWW
48	IL_4CUX_031	4CUX	0.3022	1		2	SSU rRNA	G	586	C	587	*	G	557	C	559	cWW	cWW
49	IL_4A1B_100	4A1B	0.3202	1		1	LSU rRNA	A	2557	U	2558	*	A	2561	U	2563	cWW	cWW
50	IL_3U5H_129	3U5H	0.2695	1		5	LSU rRNA	A	3210	C	3211	*	G	3177	U	3179	cWW	cWW
51	IL_3U5H_013	3U5H	0.3267	1		5	LSU rRNA	A	204	C	205	*	G	189	U	191	cWW	cWW
52	IL_4A1B_011	4A1B	0.2538	1		1	LSU rRNA	A	204	C	205	*	G	189	U	191	cWW	cWW
53	IL_1U9S_001	1U9S	0.3294	1	Single bulged A	A	RNase P class A	G	95	C	96	*	G	107	C	109	cWW	cWW
54	IL_2PJP_001	2PJP	0.2935	1	Single bulged U	B	SECIS RNA	A	29	C	30	*	G	16	U	18	cWW	cWW
55	IL_1VW3_052	1VW3	0.3418	1		A	LSU rRNA	A	1677	C	1678	*	G	1880	U	1882	cWW	cWW
56	IL_4NVV_069	4NVV	0.3882	1		A	LSU rRNA	G	1801	C	1802	*	G	2002	C	2004	cWW	cWW
57	IL_1S72_002	1S72	0.3075	1	Single bulged A (H)	0	LSU rRNA	G	33	C	34	*	G	448	C	450	cWW	cWW
58	IL_3U5F_016	3U5F	0.3475	1		6	SSU rRNA	A	288	U	289	*	A	265	U	267	cWW	cWW
59	IL_2A64_002	2A64	0.3861	1	Single bulged U	A	RNase P class B	G	395	C	396	*	G	51	C	53	cWW	cWW
60	IL_4A1B_044	4A1B	0.4004	1		1	LSU rRNA	A	1126	U	1127	*	A	1009	U	1011	cWW	cWW
61	IL_4CUV_042	4CUV	0.4290	1		1	LSU rRNA	A	1099	U	1100	*	A	983	U	985	cWW	cWW
62	IL_4CUX_025	4CUX	0.3580	1		2	SSU rRNA	U	447	C	448	*	G	458	A	460	cWW	cWW
63	IL_4O26_001	4O26	0.4213	1	Single bulged U	E	Telomerase TR	G	193	C	194	*	G	181	C	183	cWW	cWW
64	IL_2XXA_012	2XXA	0.4381	1		G	SSRP RNA	A	26	C	27	*	G	71	U	73	cWW	cWW
65	IL_3U5H_105	3U5H	0.4926	1		5	LSU rRNA	A	2740	C	2741	*	G	2714	U	2716	cWW	cWW
66	IL_3R2D_001	3R2D	0.4852	2	Multiple bulged bases	S+R	RNA (12-mer)	G	10	C	11	*	G	2	C	5	cWW	cWW
67	IL_4BPP_016	4BPP	0.4091	1		A	SSU rRNA	A	279	U	280	*	G	262	U	264	cWW	cWW
68	IL_1FJG_002	1FJG	0.4143	1	Single bulged A (H)	A	SSU rRNA	G	44	U	45	*	G	396	C	398	cWW	cWW
69	IL_4CUV_017	4CUV	0.3542	1		4+1	5.8S rRNA	G	25	U	26	*	G	337	C	339	cWW	cWW
70	IL_3U5H_014	3U5H	0.3441	1		8+5	5.8S rRNA	G	25	U	26	*	G	337	C	339	cWW	cWW
71	IL_4BPP_055	4BPP	0.3019	1		A	SSU rRNA	U	1599	U	1600	*	G	1122	A	1124	cWW	cWW
72	IL_3U5H_089	3U5H	0.2868	1		5	LSU rRNA	C	2128	U	2129	*	G	2323	G	2325	cWW	cWW
73	IL_3U5F_059	3U5F	0.2437	1		6	SSU rRNA	U	1627	U	1628	*	G	1149	A	1151	cWW	cWW
74	IL_4CUV_089	4CUV	0.3001	1		1	LSU rRNA	C	2128	U	2129	*	G	2323	G	2325	cWW	cWW
75	IL_4NVV_076	4NVV	0.2658	2		A	LSU rRNA	G	1955	C	1956	*	G	1986	C	1989	cWW	cWW
76	IL_4IOA_071	4IOA	0.2091	2		X	LSU rRNA	G	1916	C	1917	*	G	1947	C	1950	cWW	cWW
77	IL_2QBG_076	2QBG	0.2124	2		B	LSU rRNA	G	1933	C	1934	*	G	1964	C	1967	cWW	cWW
78	IL_3U5H_131	3U5H	0.1774	1		5	LSU rRNA	C	3193	C	3194	*	G	3197	G	3199	cWW	cWW
79	IL_2VPL_002	2VPL	0.1416	1	Single bulged A	B	FRAGMENT OF MRNA FOR L1-OPERON CONTAINING REGULATOR L1-BINDING SITE	U	16	C	17	*	G	28	A	30	cWW	cWW
80	IL_1FJG_014	1FJG	0.1968	1	Single bulged U (H)	A	SSU rRNA	G	392	A	393	*	U	367	C	369	cWW	cWW
81	IL_2QBG_007	2QBG	0.1340	1		B	LSU rRNA	G	36	C	37	*	G	442	C	444	cWW	cWW
82	IL_1GID_002	1GID	0.1675	1		A	P4-P6 RNA RIBOZYME DOMAIN	G	110	G	111	*	C	209	C	211	cWW	cWW
83	IL_1GID_009	1GID	0.1806	1	Single bulged A	B	P4-P6 RNA RIBOZYME DOMAIN	G	110	G	111	*	C	209	C	211	cWW	cWW
84	IL_4IOA_002	4IOA	0.2090	1	Single bulged A	X	LSU rRNA	G	36	C	37	*	G	454	C	456	cWW	cWW
85	IL_4NVV_002	4NVV	0.2395	1		A	LSU rRNA	G	36	C	37	*	G	468	C	470	cWW	cWW
86	IL_4A1B_091	4A1B	0.3096	2		1	LSU rRNA	G	2271	C	2272	*	G	2302	U	2305	cWW	cWW
87	IL_1FJG_001	1FJG	0.1978	1	Single bulged G (H)	A	SSU rRNA	U	552	A	553	*	U	30	A	32	cWW	cWW
88	IL_2IZ9_001	2IZ9	0.2429	1		R	RNA (18-mer)	C	14\|\|\|\|P_1	C	15\|\|\|\|P_1	*	G	5\|\|\|\|P_1	G	7\|\|\|\|P_1	cWW	cWW
89	IL_3WBM_001	3WBM	0.1281	1	Single bulged U	Y+X	RNA (25-MER)	U	23	C	24	*	G	2	A	4	cWW	cWW
90	IL_4CUV_029	4CUV	0.2090	1		1	LSU rRNA	C	752	C	753	*	G	779	G	781	cWW	cWW
91	IL_3U5F_001	3U5F	0.2389	1		6	SSU rRNA	U	600	A	601	*	U	24	A	26	cWW	cWW
92	IL_2IZN_001	2IZN	0.2127	1	Single bulged G	R	RNA (19-mer)	G	14\|\|\|\|P_1	G	15\|\|\|\|P_1	*	C	5\|\|\|\|P_1	C	7\|\|\|\|P_1	cWW	cWW
93	IL_2C50_001	2C50	0.1531	1		R	RNA (19-mer)	C	14\|\|\|\|P_1	C	15\|\|\|\|P_1	*	G	5\|\|\|\|P_1	G	7\|\|\|\|P_1	cWW	cWW
94	IL_2IZM_001	2IZM	0.1621	1		R	RNA (19-mer)	C	14\|\|\|\|P_1	C	15\|\|\|\|P_1	*	G	5\|\|\|\|P_1	G	7\|\|\|\|P_1	cWW	cWW
95	IL_2BU1_001	2BU1	0.1394	1		R	RNA (19-mer)	C	14\|\|\|\|P_1	C	15\|\|\|\|P_1	*	G	5\|\|\|\|P_1	G	7\|\|\|\|P_1	cWW	cWW
96	IL_2C4Z_001	2C4Z	0.2269	1		R	RNA (19-mer)	C	14\|\|\|\|P_1	C	15\|\|\|\|P_1	*	G	5\|\|\|\|P_1	G	7\|\|\|\|P_1	cWW	cWW
97	IL_2BQ5_001	2BQ5	0.2068	1		R	RNA (19-mer)	C	14\|\|\|\|P_1	C	15\|\|\|\|P_1	*	G	5\|\|\|\|P_1	G	7\|\|\|\|P_1	cWW	cWW
98	IL_4FRG_002	4FRG	0.2072	1	Single bulged U	B	Cobalamin riboswitch	C	39	C	40	*	G	23	G	25	cWW	cWW
99	IL_2PLY_002	2PLY	0.1889	1		E	RNA (23-mer)	C	21	G	22	*	C	25	G	27	cWW	cWW
100	IL_3SN2_001	3SN2	0.2041	1	Single bulged C	B	IRE II	C	24	A	25	*	U	7	G	9	cWW	cWW
101	IL_2AW7_001	2AW7	0.1570	1		A	SSU rRNA	U	552	A	553	*	U	30	A	32	cWW	cWW
102	IL_1DQH_001	1DQH	0.1610	1	Single bulged C	A+B	RNA (9-mer) + RNA (10-mer)	C	3	A	4	*	U	15	G	17	cWW	cWW
103	IL_1S03_006	1S03	0.1138	1	Single bulged C	B	47-MER	C	39	C	40	*	G	9	G	11	cWW	cWW
104	IL_1I9X_002	1I9X	0.1545	1	Single bulged A	A+B	RNA (13-mer)	U	9	A	10	*	U	4	A	6	cWW	cWW
105	IL_4BPP_075	4BPP	0.1846	1		A	SSU rRNA	C	1374	C	1375	*	G	1364	G	1366	cWW	cWW
106	IL_1S72_104	1S72	0.1737	1	Single bulged U (H)	9	5S rRNA	C	95	C	96	*	G	86	G	88	cWW	cWW
107	IL_1I9X_001	1I9X	0.2441	1	Single bulged A	B+A	RNA (13-mer)	U	9	A	10	*	U	4	A	6	cWW	cWW
108	IL_4CUV_146	4CUV	0.2288	1		1	LSU rRNA	U	3363	C	3364	*	G	3340	A	3342	cWW	cWW
109	IL_2AW7_017	2AW7	0.2796	1		A	SSU rRNA	C	392	A	393	*	U	367	G	369	cWW	cWW
110	IL_3U5H_140	3U5H	0.2044	1		5	LSU rRNA	U	3363	C	3364	*	G	3340	A	3342	cWW	cWW
111	IL_3U5F_056	3U5F	0.2509	1		6	SSU rRNA	C	1066	C	1067	*	G	1051	G	1053	cWW	cWW
112	IL_1FJG_036	1FJG	0.2351	1	Single bulged G (H)	A	SSU rRNA	U	1390	U	1391	*	G	925	G	927	cWW	cWW
113	IL_2AW7_043	2AW7	0.2345	1		A	SSU rRNA	U	1390	U	1391	*	G	925	G	927	cWW	cWW
114	IL_4A1B_056	4A1B	0.1805	1		1	LSU rRNA	U	1351	U	1352	*	A	1207	G	1209	cWW	cWW
115	IL_3TZR_002	3TZR	0.2193	1	Single bulged U	A+B	RNA (20-mer) + RNA (16-mer)	U	61	C	62	*	G	105	G	107	cWW	cWW
116	IL_4ANG_001	4ANG	0.2795	1		R	RNA (20-mer)	C	15\|\|A\|\|P_1	U	16\|\|A\|\|P_1	*	A	5\|\|A\|\|P_1	G	7\|\|A\|\|P_1	cWW	cWW
117	IL_4CUV_003	4CUV	0.2569	1		4+1	5.8S rRNA	G	144	U	145	*	A	13	C	15	cWW	ncWW
118	IL_3U5H_003	3U5H	0.2076	1		8+5	5.8S rRNA	G	144	U	145	*	A	13	C	15	cWW	cWW
119	IL_4BPP_031	4BPP	0.1385	1		A	SSU rRNA	A	579	G	580	*	C	552	U	554	cWW	cWW
120	IL_3U5H_143	3U5H	0.1256	1		7	5S rRNA	C	15	U	16	*	A	63	G	65	cWW	cWW
121	IL_3D2V_001	3D2V	0.0000	1	Single bulged U	A	TPP riboswitch (THI element)	C	5	C	6	*	G	73	G	75	cWW	cWW
122	IL_1R3E_002	1R3E	0.0683	3	Multiple bulged bases	D+E	RNA (17-mer)	C	415	C	416	*	G	408	G	412	cWW	cWW
123	IL_1R3E_001	1R3E	0.1500	3	Multiple bulged bases	E+D	RNA (17-mer)	C	415	C	416	*	G	408	G	412	cWW	cWW
124	IL_3U5H_142	3U5H	0.2254	2		5	LSU rRNA	C	3349	C	3350	*	G	3353	G	3356	cWW	cWW
125	IL_4CUV_101	4CUV	0.1682	1		1	LSU rRNA	A	2811	C	2812	*	G	2409	U	2411	cWW	cWW
126	IL_4A1B_095	4A1B	0.1569	1		1	LSU rRNA	A	2799	C	2800	*	G	2404	U	2406	cWW	cWW
127	IL_1S72_030	1S72	0.1562	1	Single bulged U (H)	0	LSU rRNA	C	847	C	848	*	G	834	G	836	cWW	cWW
128	IL_3U5H_098	3U5H	0.1591	1		5	LSU rRNA	A	2811	C	2812	*	G	2409	U	2411	cWW	cWW
129	IL_1VW3_018	1VW3	0.2163	1		A	LSU rRNA	U	606	A	607	*	U	654	A	656	cWW	cWW
130	IL_4CUV_150	4CUV	0.1751	1		3	5S rRNA	C	15	U	16	*	A	63	G	65	cWW	cWW
131	IL_4A1B_124	4A1B	0.2464	1		1	LSU rRNA	U	3179	C	3180	*	G	3158	A	3160	cWW	cWW
132	IL_1VW3_069	1VW3	0.3371	1		A	LSU rRNA	A	2287	U	2288	*	A	2304	U	2306	cWW	cWW
133	IL_4CUV_056	4CUV	0.3091	1		1	LSU rRNA	U	1324	U	1325	*	A	1180	A	1182	cWW	cWW
134	IL_3U5H_055	3U5H	0.3490	1		5	LSU rRNA	U	1324	U	1325	*	A	1180	A	1182	cWW	cWW
135	IL_4IOA_034	4IOA	0.3071	1	Single bulged U	X	LSU rRNA	C	1160	U	1161	*	A	1022	G	1024	cWW	cWW
136	IL_3OWZ_001	3OWZ	0.3119	1		A	Glycine riboswitch	U	27	C	28	*	G	12	A	14	cWW	cWW
137	IL_2QBG_069	2QBG	0.2587	1		B	LSU rRNA	C	1727	C	1728	*	G	1731	G	1733	cWW	cWW
138	IL_4NVV_021	4NVV	0.3024	1		A	LSU rRNA	C	744	C	745	*	G	810	G	812	cWW	cWW
139	IL_4IOA_015	4IOA	0.3449	1	Single bulged A	X	LSU rRNA	C	710	C	711	*	G	776	G	778	cWW	cWW
140	IL_4CUV_119	4CUV	0.5801	2		1	LSU rRNA	C	2881	U	2882	*	A	2940	G	2943	cWW	cWW
141	IL_4A1B_113	4A1B	0.5910	2		1	LSU rRNA	C	2869	U	2870	*	A	2928	G	2931	cWW	cWW
142	IL_3U5H_115	3U5H	0.5478	2		5	LSU rRNA	C	2881	U	2882	*	A	2940	G	2943	cWW	cWW
143	IL_1S72_086	1S72	0.5292	2		0	LSU rRNA	C	2547	C	2548	*	G	2606	G	2609	cWW	cWW
144	IL_3U5H_125	3U5H	0.4238	2		5	LSU rRNA	C	3063	U	3064	*	A	3077	G	3080	cWW	cWW
145	IL_4CUV_130	4CUV	0.4262	2		1	LSU rRNA	C	3063	U	3064	*	A	3077	G	3080	cWW	cWW
146	IL_1VW3_087	1VW3	0.4767	2		A	LSU rRNA	U	2962	U	2963	*	A	3047	G	3050	cWW	cWW
147	IL_4CUX_053	4CUX	0.3693	1		2	SSU rRNA	C	1066	C	1067	*	G	1051	G	1053	cWW	ncWW
148	IL_3DIR_001	3DIR	0.3560	1		A	Lysine riboswitch	C	78	C	79	*	G	12	G	14	cWW	cWW
149	IL_3D0U_001	3D0U	0.2976	1	Single bulged C	A	Lysine riboswitch	C	75	C	76	*	G	9	G	11	cWW	cWW
150	IL_397D_001	397D	0.3154	3	Multiple bulged bases	B+A	RNA (12-mer)	C	39	U	40	*	A	22	G	26	cWW	cWW
151	IL_1S03_005	1S03	0.2654	1	Single bulged U	B	47-MER	C	41	U	42	*	A	6	G	8	cWW	cWW
152	IL_1S72_040	1S72	0.2763	1		0	LSU rRNA	C	1253	C	1254	*	G	1108	G	1110	cWW	cWW
153	IL_4NVV_080	4NVV	0.2287	1		A	LSU rRNA	C	2454	C	2455	*	G	2089	G	2091	cWW	cWW
154	IL_2QBG_080	2QBG	0.2472	1		B	LSU rRNA	C	2442	C	2443	*	G	2067	G	2069	cWW	cWW
155	IL_4IOA_075	4IOA	0.2461	1	Single bulged U	X	LSU rRNA	C	2421	C	2422	*	G	2050	G	2052	cWW	cWW
156	IL_1VW3_064	1VW3	0.2554	1		A	LSU rRNA	C	2708	U	2709	*	A	1967	G	1969	cWW	cWW
157	IL_4A1B_010	4A1B	0.2876	2		1	LSU rRNA	C	177	U	178	*	A	240	G	243	cWW	cWW
158	IL_4A1B_031	4A1B	0.2475	1		1	LSU rRNA	C	776	C	777	*	G	804	G	806	cWW	cWW
159	IL_3U5H_025	3U5H	0.2715	1		5	LSU rRNA	C	752	C	753	*	G	779	G	781	cWW	cWW
160	IL_6MSF_001	6MSF	0.2919	1	Single bulged A	R	RNA (14-mer)	G	12\|\|\|\|P_1	G	13\|\|\|\|P_1	*	C	2\|\|\|\|P_1	C	4\|\|\|\|P_1	cWW	cWW
161	IL_1S72_074	1S72	0.2757	1	Single bulged U (H)	0	LSU rRNA	C	2477	U	2478	*	A	2108	G	2110	cWW	cWW
162	IL_4A1C_003	4A1C	0.2848	1		3	5S rRNA	U	15	A	16	*	U	62	A	64	cWW	cWW
163	IL_1VW3_019	1VW3	0.2635	1		A	LSU rRNA	U	611	G	612	*	C	619	A	621	cWW	cWW
164	IL_4CUV_037	4CUV	0.3044	1		1	LSU rRNA	C	886	G	887	*	C	873	G	875	cWW	cWW
165	IL_4A1B_076	4A1B	0.3050	1		1	LSU rRNA	C	1733	A	1734	*	U	1758	G	1760	cWW	ncWW
166	IL_3U5H_034	3U5H	0.3648	1		5	LSU rRNA	C	886	G	887	*	C	873	G	875	cWW	cWW
167	IL_4A1B_039	4A1B	0.3934	1		1	LSU rRNA	C	911	G	912	*	C	898	G	900	cWW	cWW
168	IL_1FJG_043	1FJG	0.3932	1		A	SSU rRNA	C	1060	G	1061	*	C	1195	G	1197	cWW	cWW
169	IL_2AW7_051	2AW7	0.3975	1		A	SSU rRNA	U	1060	G	1061	*	C	1195	A	1197	cWW	cWW
170	IL_4LGT_002	4LGT	0.3455	1	Single bulged A	E	stem-loop of 23S rRNA	C	2591	G	2592	*	C	2601	G	2603	cWW	cWW
171	IL_2NOK_003	2NOK	0.3590	1		A+B	RNA (24-mer) + RNA (20-mer)	U	61	C	62	*	G	105	G	107	cWW	cWW
172	IL_2NOK_006	2NOK	0.4517	1		C+D	RNA (24-mer) + RNA (20-mer)	U	61	C	62	*	G	105	G	107	cWW	cWW
173	IL_4A1B_121	4A1B	0.5271	2		1	LSU rRNA	U	3052	U	3053	*	A	3066	G	3069	cWW	cWW
174	IL_2QBG_104	2QBG	0.4826	2		B	LSU rRNA	U	2695	U	2696	*	A	2711	G	2714	cWW	cWW
175	IL_4A1B_123	4A1B	0.4752	1		1	LSU rRNA	U	3247	C	3248	*	G	3144	G	3146	cWW	cWW
176	IL_1X8W_001	1X8W	0.5388	1		A	Group I catalytic intron	G	110	G	111	*	C	209	C	211	cWW	cWW
177	IL_4CUV_065	4CUV	0.5186	1		1	LSU rRNA	C	1420	G	1421	*	C	1385	G	1387	cWW	cWW
178	IL_1MFQ_005	1MFQ	0.4583	1	Single bulged A	A	SRP RNA	C	220	C	221	*	G	175	G	177	cWW	cWW
179	IL_4BPP_021	4BPP	0.4844	1		A	SSU rRNA	C	402	A	403	*	U	412	G	414	cWW	cWW
180	IL_4CUV_023	4CUV	0.4058	1		1	LSU rRNA	U	512	G	513	*	C	577	G	579	ncWW	cWW
181	IL_4BPP_067	4BPP	0.4104	1		A	SSU rRNA	C	1252	G	1253	*	C	1397	G	1399	cWW	cWW
182	IL_4CUV_094	4CUV	0.3950	1		1	LSU rRNA	C	2237	G	2238	*	C	2204	G	2206		cWW
183	IL_4A1B_105	4A1B	0.4862	1		1	LSU rRNA	A	2774	G	2775	*	C	2760	U	2762	cWW	cWW
184	IL_1NBS_009	1NBS	0.5063	2	Major groove intercalation	B	RNase P class B	U	181	G	182	*	U	228	A	231	cWW	cWW
185	IL_1NBS_002	1NBS	0.4869	2	Major groove intercalation (H)	A	RNase P class B	U	181	G	182	*	U	228	A	231	cWW	cWW
186	IL_3U5H_093	3U5H	0.5158	1		5	LSU rRNA	C	2237	G	2238	*	C	2204	G	2206	cWW	cWW
187	IL_4A1B_050	4A1B	0.4008	1		1	LSU rRNA	U	1117	C	1118	*	G	1094	G	1096	cWW	cWW
188	IL_1U9S_003	1U9S	0.4242	2	Major groove intercalation	A	RNase P class A	U	116	G	117	*	C	224	A	227	cWW	cWW
189	IL_2QBG_035	2QBG	0.3849	1		B	LSU rRNA	U	1159	G	1160	*	C	994	A	996	cWW	cWW
190	IL_4NVV_037	4NVV	0.3321	1		A	LSU rRNA	U	1205	G	1206	*	C	1040	A	1042	cWW	cWW
191	IL_4A1B_088	4A1B	0.4140	1		1	LSU rRNA	C	2232	G	2233	*	C	2199	G	2201	cWW	cWW
192	IL_4IOA_031	4IOA	0.3565	1	Single bulged C	X	LSU rRNA	U	1170	A	1171	*	U	1005	A	1007	cWW	cWW
193	IL_1S72_064	1S72	0.3455	1	Single bulged A (H)	0	LSU rRNA	C	1826	G	1827	*	C	2021	G	2023	cWW	cWW
194	IL_3B31_001	3B31	0.3621	1	Single bulged A	A	RNA (29-MER)	C	6194	G	6195	*	C	6181	G	6183	cWW	cWW
195	IL_2QUX_002	2QUX	0.3803	1	Single bulged A	F	RNA (25-MER)	C	20	G	21	*	C	5	G	7	cWW	cWW
196	IL_3U5F_069	3U5F	0.3321	1		6	SSU rRNA	C	1280	G	1281	*	C	1426	G	1428	cWW	cWW
197	IL_1F7Y_002	1F7Y	0.3119	1		B	16S RIBOSOMAL RNA FRAGMENT	G	21	G	22	*	C	46	C	48	cWW	cWW
198	IL_4A1B_116	4A1B	0.2691	1		1	LSU rRNA	C	2948	G	2949	*	C	2958	G	2960	cWW	cWW
199	IL_3U5H_119	3U5H	0.2866	1		5	LSU rRNA	C	2960	G	2961	*	C	2970	G	2972	cWW	cWW
200	IL_1S72_088	1S72	0.2641	1		0	LSU rRNA	C	2626	G	2627	*	C	2636	G	2638	cWW	cWW
201	IL_3MEI_001	3MEI	0.2851	1	Single bulged U	A+B	RNA (23-mer)	C	7	G	8	*	C	15	G	17	cWW	cWW
202	IL_1VW3_082	1VW3	0.2641	1		A	LSU rRNA	C	2858	G	2859	*	C	2868	G	2870	cWW	cWW
203	IL_2QBG_099	2QBG	0.2497	1		B	LSU rRNA	C	2591	G	2592	*	C	2601	G	2603	cWW	cWW
204	IL_4NVV_097	4NVV	0.2484	1		A	LSU rRNA	C	2603	G	2604	*	C	2613	G	2615	cWW	cWW
205	IL_4CUV_123	4CUV	0.2491	1		1	LSU rRNA	C	2960	G	2961	*	C	2970	G	2972	cWW	cWW
206	IL_4CUX_066	4CUX	0.2970	1		2	SSU rRNA	C	1280	G	1281	*	C	1426	G	1428	cWW	cWW
207	IL_4BPP_009	4BPP	0.4026	2		A	SSU rRNA	A	291	G	292	*	U	109	U	112	cWW	cWW
208	IL_4A1B_006	4A1B	0.4097	1		1	LSU rRNA	G	158	G	159	*	U	260	C	262	cWW	cWW
209	IL_1FJG_007	1FJG	0.4288	2	Multiple bulged bases (H)	A	SSU rRNA	G	231	G	232	*	U	129	C	131	cWW	cWW
210	IL_3U5H_065	3U5H	0.5458	1		5	LSU rRNA	C	1411	G	1412	*	U	1398	G	1400	cWW	cWW
211	IL_1S72_067	1S72	0.5534	2	Major groove intercalation (H)	0	LSU rRNA	U	1897	G	1898	*	U	1939	A	1942	cWW	cWW
212	IL_4CUV_093	4CUV	0.4733	2		1	LSU rRNA	U	2200	G	2201	*	U	2241	A	2244	cWW	cWW
213	IL_2QBG_073	2QBG	0.5446	2		B	LSU rRNA	U	1841	G	1842	*	U	1898	A	1901	cWW	cWW
214	IL_3U5H_092	3U5H	0.5540	2		5	LSU rRNA	U	2200	G	2201	*	U	2241	A	2244	cWW	cWW
215	IL_1VW3_055	1VW3	0.4669	2		A	LSU rRNA	U	1749	G	1750	*	U	1799	A	1802	cWW	cWW
216	IL_3UCZ_003	3UCZ	0.4709	2		R	Cyclic di-GMP-I riboswitch	G	56	G	57	*	U	81	C	84	cWW	cWW
217	IL_1FUF_003	1FUF	0.5164	2	Multiple bulged bases	A+B	RNA (14-mer)	G	9	G	10	*	U	19	C	22	cWW	cWW
218	IL_1FUF_002	1FUF	0.5051	2	Multiple bulged bases	B+A	RNA (14-mer)	G	23	G	24	*	U	5	C	8	cWW	cWW
219	IL_2QBG_089	2QBG	0.4893	1		B	LSU rRNA	G	2414	G	2415	*	U	2401	C	2403	cWW	cWW
220	IL_2AW7_019	2AW7	0.4560	1		A	SSU rRNA	U	375	G	376	*	U	387	A	389	cWW	cWW
221	IL_1FJG_016	1FJG	0.4129	1		A	SSU rRNA	U	375	G	376	*	U	387	A	389	cWW	cWW
222	IL_4A1B_023	4A1B	0.5178	1		1	LSU rRNA	G	493	G	494	*	U	484	C	486	cWW	cWW
223	IL_3IWN_004	3IWN	0.4774	2	Multiple bulged bases	A	Cyclic di-GMP-I riboswitch	G	46	G	47	*	U	76	C	79	cWW	cWW
224	IL_3DIR_005	3DIR	0.5124	1		A	Lysine riboswitch	G	84	G	85	*	U	109	C	111	cWW	cWW
225	IL_1S72_010	1S72	0.4883	1	Single bulged G (H)	0	LSU rRNA	G	274	G	275	*	U	374	C	376	cWW	cWW
226	IL_4NVV_104	4NVV	0.5467	1		A	LSU rRNA	G	2848	G	2849	*	U	2888	C	2890	cWW	cWW
227	IL_3Q1Q_004	3Q1Q	0.4000	2		B	RNase P class A	G	108	G	109	*	C	205	C	208	cWW	cWW
228	IL_1S72_096	1S72	0.4719	1	Single bulged A (H)	0	LSU rRNA	G	2860	G	2861	*	C	2895	C	2897	cWW	cWW
229	IL_3UCZ_002	3UCZ	0.5927	1		R	Cyclic di-GMP-I riboswitch	G	86	G	87	*	C	52	C	54	cWW	cWW
230	IL_3IWN_003	3IWN	0.6481	1	Major groove intercalation	A	Cyclic di-GMP-I riboswitch	G	81	G	82	*	C	42	C	44	cWW	cWW
231	IL_4BPP_025	4BPP	0.3406	1		A	SSU rRNA	A	473	G	474	*	C	498	U	500	cWW	cWW
232	IL_1VW3_041	1VW3	0.2905	1		A	LSU rRNA	U	1394	U	1395	*	A	1370	A	1372	cWW	cWW
233	IL_3U5F_026	3U5F	0.3514	1		6	SSU rRNA	A	481	U	482	*	A	505	U	507	cWW	cWW
234	IL_4BPP_024	4BPP	0.3519	1		A	SSU rRNA	U	439	C	440	*	G	450	A	452	cWW	cWW
235	IL_1VW3_028	1VW3	0.3238	1		A	LSU rRNA	A	828	A	829	*	U	797	U	799	cWW	cWW
236	IL_1VW3_088	1VW3	0.1978	1		A	LSU rRNA	A	2970	A	2971	*	U	3038	U	3040	cWW	cWW
237	IL_3DHS_002	3DHS	0.2194	1		A	RNase P class B	G	395	C	396	*	G	51	C	53	cWW	cWW
238	IL_3U5H_026	3U5H	0.2137	1		5	LSU rRNA	A	755	U	756	*	A	775	U	777	cWW	cWW
239	IL_4IOA_057	4IOA	0.2372	1	Single bulged C	X	LSU rRNA	A	1534	C	1535	*	G	1488	U	1490	cWW	cWW
240	IL_4CUX_001	4CUX	0.2095	1		2	SSU rRNA	U	600	A	601	*	U	24	A	26	cWW	cWW
241	IL_4CUV_002	4CUV	0.2503	1		1+4	LSU rRNA + 5.8S rRNA	C	7	C	8	*	G	150	G	152	cWW	cWW
242	IL_3U5H_002	3U5H	0.2017	1		5+8	LSU rRNA + 5.8S rRNA	C	7	C	8	*	G	150	G	152	cWW	cWW
243	IL_1VW3_004	1VW3	0.2007	1		A	LSU rRNA	C	96	U	97	*	A	378	G	380	cWW	cWW
244	IL_2PN4_003	2PN4	0.2257	1		A+B	RNA (24-mer) + RNA (20-mer)	U	61	C	62	*	G	105	G	107	cWW	cWW
245	IL_3W3S_002	3W3S	0.1472	1	Single bulged U	B	Selenocysteine transfer RNA	C	26	C	27	*	G	43	G	44	cWW	cWW
246	IL_4BPP_064	4BPP	0.1940	1		A	SSU rRNA	C	1411	C	1412	*	G	1240	G	1242	cWW	cWW
247	IL_2AW7_048	2AW7	0.1568	1		A	SSU rRNA	C	1208	C	1209	*	G	1048	G	1050	cWW	cWW
248	IL_4CUV_076	4CUV	0.1562	1		1	LSU rRNA	C	1669	C	1670	*	G	1778	G	1780	cWW	cWW
249	IL_2A64_003	2A64	0.1518	1	Single bulged U	A	RNase P class B	C	77	C	78	*	G	66	G	68	cWW	cWW
250	IL_3DHS_003	3DHS	0.2065	1		A	RNase P class B	C	77	C	78	*	G	66	G	68	cWW	cWW
251	IL_1U63_002	1U63	0.1684	1		B	49 NT FRAGMENT OF MRNA FOR L1	U	16	C	17	*	G	28	A	30	cWW	cWW
252	IL_4BPP_053	4BPP	0.1444	1		A	SSU rRNA	U	1100	C	1101	*	G	1091	A	1093	cWW	cWW
253	IL_1VW3_067	1VW3	0.1643	2		A	LSU rRNA	C	2256	U	2257	*	A	1988	G	1991	cWW	cWW
254	IL_3U5H_077	3U5H	0.1388	1		5	LSU rRNA	C	1669	C	1670	*	G	1778	G	1780	cWW	cWW
255	IL_4A1B_084	4A1B	0.1849	1		1	LSU rRNA	C	2124	C	2125	*	G	2318	G	2320	cWW	cWW
256	IL_4A1B_072	4A1B	0.3480	1		1	LSU rRNA	U	1693	C	1694	*	G	1804	G	1806	cWW	cWW
257	IL_4CUV_059	4CUV	0.2247	1		1	LSU rRNA	C	1296	C	1297	*	G	1207	G	1209	cWW	cWW
258	IL_2ZY6_002	2ZY6	0.2516	1	Single bulged U	A	phenylalanyl transfer RNA	C	24	C	25	*	G	10	G	12	cWW	cWW
259	IL_4A1B_059	4A1B	0.2673	1		1	LSU rRNA	C	1323	C	1324	*	G	1234	G	1236	cWW	cWW
260	IL_3U5H_058	3U5H	0.2561	1		5	LSU rRNA	C	1296	C	1297	*	G	1207	G	1209	cWW	cWW
261	IL_3GX5_001	3GX5	0.1956	1		A	SAM-I riboswitch	C	40	C	41	*	G	13	G	15	cWW	cWW
262	IL_1FJG_040	1FJG	0.1627	1	Single bulged U (H)	A	SSU rRNA	C	1208	C	1209	*	G	1048	G	1050	cWW	cWW
263	IL_4BPP_013	4BPP	0.1269	1		A	SSU rRNA	C	192	C	193	*	G	181	G	183	cWW	cWW
264	IL_3U5F_024	3U5F	0.1831	1		6	SSU rRNA	U	463	A	464	*	U	439	A	441	cWW	cWW
265	IL_4BPP_022	4BPP	0.2064	1		A	SSU rRNA	C	455	A	456	*	U	431	G	433	cWW	cWW
266	IL_4B5R_001	4B5R	0.1999	1	Single bulged A (H)	A	SAM-I riboswitch	C	40	C	41	*	G	13	G	15	cWW	cWW
267	IL_3U5F_066	3U5F	0.1805	1		6	SSU rRNA	C	1440	C	1441	*	G	1268	G	1270	cWW	cWW
268	IL_4AOB_001	4AOB	0.2615	1	Single bulged A	A	SAM-I riboswitch	C	40	C	41	*	G	13	G	15	cWW	cWW
269	IL_1S72_077	1S72	0.2249	1	Single bulged A (H)	0	LSU rRNA	G	2279	A	2280	*	U	2290	C	2292	cWW	cWW
270	IL_3U5H_103	3U5H	0.2293	1		5	LSU rRNA	G	2614	G	2615	*	C	2625	C	2627	cWW	cWW
271	IL_4A1B_131	4A1B	0.2305	1		1	LSU rRNA	C	3320	U	3321	*	A	3297	G	3299	cWW	cWW
272	IL_4C7O_004	4C7O	0.2915	1	Single bulged G	E	SRP RNA	A	15	A	16	*	U	27	U	29	cWW	cWW
273	IL_2AW7_002	2AW7	0.3185	1		A	SSU rRNA	A	44	G	45	*	C	396	U	398	cWW	cWW
274	IL_4L8H_001	4L8H	0.3281	1	Single bulged A	R	RNA operator hairpin	A	16	G	17	*	C	4	U	6	cWW	cWW
275	IL_1JZV_002	1JZV	0.3005	1	Single bulged A	A+B	RNA (8-mer) + RNA (9-mer)	G	4	A	5	*	U	12	C	14	cWW	cWW
276	IL_1JZV_005	1JZV	0.3071	1		C+D	RNA (8-mer) + RNA (9-mer)	G	24	A	25	*	U	32	C	34	cWW	cWW
277	IL_2AW7_026	2AW7	0.3429	1		A	SSU rRNA	C	470	U	471	*	A	460	G	462	cWW	cWW
278	IL_2AW7_008	2AW7	0.3875	1		A	SSU rRNA	G	75	G	76	*	U	93	C	95	cWW	cWW
279	IL_1ET4_004	1ET4	0.3980	1		B	RNA APTAMER, 35-MER	C	318	C	319	*	G	326	G	328	cWW	cWW
280	IL_1ET4_002	1ET4	0.4026	1	Major groove intercalation	A	RNA APTAMER, 35-MER	C	218	C	219	*	G	226	G	228	cWW	cWW
281	IL_1MJI_001	1MJI	0.4462	2		C	5S rRNA fragment	C	30	C	31	*	G	51	G	54	cWW	cWW
282	IL_4FAW_004	4FAW	0.4478	1		A	Group II catalytic intron D1-D4-3	A	99	A	100	*	U	82	U	84	cWW	cWW
283	IL_1GID_005	1GID	0.4620	1		A	P4-P6 RNA RIBOZYME DOMAIN	A	192	C	193	*	G	129	U	131	cWW	cWW
284	IL_4CUX_063	4CUX	0.4109	1		2	SSU rRNA	C	1440	C	1441	*	G	1268	G	1270	cWW	cWW
285	IL_4A1B_051	4A1B	0.4602	2		1	LSU rRNA	G	1111	A	1112	*	U	1101	C	1104	cWW	cWW
286	IL_3U5H_050	3U5H	0.4459	1		5	LSU rRNA	G	1083	A	1084	*	U	1074	C	1076	cWW	cWW
287	IL_4CUV_051	4CUV	0.4865	1		1	LSU rRNA	G	1083	A	1084	*	U	1074	C	1076	cWW	cWW
288	IL_3U5F_009	3U5F	0.3663	2		6	SSU rRNA	A	300	A	301	*	U	113	U	116	cWW	cWW
289	IL_2AW7_042	2AW7	0.3614	1		A	SSU rRNA	G	922	A	923	*	U	1393	C	1395	cWW	cWW
290	IL_3U5F_058	3U5F	0.4504	1		6	SSU rRNA	G	1146	A	1147	*	U	1630	C	1632	cWW	cWW
291	IL_1FJG_035	1FJG	0.4464	1	Single bulged A (H)	A	SSU rRNA	G	922	A	923	*	U	1393	C	1395	cWW	cWW
292	IL_4BPP_054	4BPP	0.4465	1		A	SSU rRNA	G	1119	A	1120	*	U	1602	C	1604	cWW	cWW
293	IL_2XXA_010	2XXA	0.3992	1		G	SSRP RNA	G	17	C	18	*	G	82	C	84	cWW	cWW	ncWw
294	IL_1GID_012	1GID	0.4538	1	Single bulged U	B	P4-P6 RNA RIBOZYME DOMAIN	A	192	C	193	*	G	129	U	131	cWW	cWW
295	IL_4NVV_047	4NVV	0.4463	1		A	LSU rRNA	G	1275	C	1276	*	G	1264	C	1266	cWW	cWW
296	IL_3U5H_039	3U5H	0.4467	1		5	LSU rRNA	A	1099	U	1100	*	A	983	U	985	cWW	cWW
297	IL_4CUX_017	4CUX	0.4599	1		2	SSU rRNA	A	288	U	289	*	A	265	U	267		ncWW	ncwW
298	IL_3IVK_003	3IVK	0.5040	1		C	class I ligase product	A	112	C	113	*	G	46	U	48	cWW	ncWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CC*GUG	29
CC*GAG	16
CG*CAG	15
GC*GAC	12
AC*GUU	11
GC*GUC	10
CC*GCG	9
GA*UAC	9
UC*GUA	8
CG*CUG	8
AC*GAU	6
UG*UAAA	6
AU*AAU	5
GC*GCAU	5
UC*GAA	5
GG*CAC	5
UC*GUG	5
CU*AAG	5
CU*AUG	5
UU*GGA	4
AU*AGU	4
GU*AUC	4
AC*GCU	4
CA*UCG	4
UA*UAA	4
AG*CAU	4
GU*GAC	3
GC*GCAC	3
UA*UCA	3
CU*AACG	3
GG*UGC	3
CC*GUUG	2
GU*GGC	2
GC*GGU	2
GC*GAU	2
GC*GCC	2
AU*AUU	2
UC*GGA	2
CU*GAG	2
UA*UGA	2
GG*CGC	2
CA*UUG	2
UU*GGG	2
CC*GUUCG	2
UU*AUA	2
CU*AUUG	2
UC*GCG	2
UG*CCA	2
GG*UUC	2
GG*UAGC	2
GG*UUUC	2
UG*UGA	2
GG*CUC	2
AA*UAU	2
AA*UGU	2
GU*AAU	1
GU*AAUC	1
GC*GCUC	1
AU*GAU	1
GA*UUC	1
UU*AUG	1
CC*GUCG	1
UU*AUAG	1
CU*AUCUG	1
CU*AAGG	1
UG*CGA	1
UG*CAA	1
UU*AAUG	1
UU*ACUG	1
UG*CAG	1
CUG*CG	1
AG*CUU	1
UG*CAAA	1
GG*CCC	1
AG*UAGU	1
GG*UGAC	1
CG*UAG	1
UG*UCAA	1
GG*UAC	1
GG*UCC	1
GG*CAAC	1
UU*AAA	1
CU*AUAG	1
UA*UUA	1
CC*GAAG	1
GA*UUAC	1
AA*UCGU	1
AAU*AU	1

Non-Watson-Crick part of the motif

Sequence	Counts
*A	102
*U	94
*G	28
*C	28
*CA	9
*AA	9
*UU	6
*AG	4
*AC	3
*UA	3
*AU	2
*CU	2
*UUC	2
*UC	1
*UCU	1
U*	1
*GA	1
*CG	1
A*	1

Release history

Release	1.15
Date	2014-06-20
Status	Updated, 2 parents

Parent motifs

Parent motif	Common motif instances	Only in IL_97217.13	Only in the parent motif
IL_97217.12 Compare	IL_4IOA_002, IL_4FAW_004, IL_4L8H_001, IL_4BPP_022, IL_3SN2_001, IL_4BPP_024, IL_4ANG_001, IL_2AW7_051, IL_4IOA_075, IL_4A1B_059, IL_3U5H_105, IL_4A1B_116, IL_3U5H_103, IL_3DIR_001, IL_4A1B_051, IL_4A1B_050, IL_4A1B_056, IL_2C50_001, IL_3U5H_065, IL_1VW3_064, IL_1VW3_067, IL_3D2V_001, IL_1VW3_060, IL_1S72_040, IL_4NVV_002, IL_4A1B_044, IL_1VW3_069, IL_3Q1Q_004, IL_2AW7_026, IL_3TZR_002, IL_4BPP_021, IL_4A1B_124, IL_2PN4_003, IL_1CSL_002, IL_2QBG_099, IL_4BPP_016, IL_2QBG_069, IL_4BPP_013, IL_4BPP_025, IL_1GID_009, IL_3U5F_059, IL_3U5F_056, IL_1GID_005, IL_1ET4_002, IL_3U5H_077, IL_4A1B_131, IL_1S72_030, IL_1S72_096, IL_4NVV_076, IL_1VW3_028, IL_3B31_001, IL_2XXA_010, IL_3U5H_025, IL_2XXA_012, IL_4IOA_071, IL_2NOK_006, IL_1I9X_001, IL_2NOK_003, IL_2QBG_080, IL_1I9X_002, IL_4IOA_057, IL_3U5H_026, IL_4BPP_075, IL_2QBG_089, IL_3SNP_001, IL_4IOA_031, IL_1FJG_040, IL_2QBG_007, IL_1VW3_004, IL_3U5H_003, IL_3U5H_002, IL_1S72_067, IL_4A1B_072, IL_1S72_088, IL_3DHS_003, IL_2PLY_002, IL_1S72_104, IL_6MSF_001, IL_3U5F_026, IL_1U9S_003, IL_3U5F_024, IL_1VW3_087, IL_3GX5_001, IL_3IWN_004, IL_3IWN_003, IL_1VW3_082, IL_4NVV_104, IL_4BPP_031, IL_3U5H_089, IL_1VW3_088, IL_2OIU_003, IL_2OIU_001, IL_2AW7_042, IL_4BPP_072, IL_4LGT_002, IL_2QBG_035, IL_1VW3_018, IL_1VW3_019, IL_2C4Z_001, IL_3U5H_014, IL_1S72_077, IL_1S72_074, IL_2AW7_001, IL_1S72_070, IL_2AW7_002, IL_3U5H_119, IL_3U5H_152, IL_2QBG_073, IL_3U5F_031, IL_2QBG_023, IL_2QBG_076, IL_3U5H_094, IL_1JZV_002, IL_3OWZ_001, IL_1VW3_091, IL_3U5H_092, IL_3U5H_093, IL_3SUX_001, IL_1R3E_001, IL_3U5H_098, IL_2AW7_008, IL_4BPP_064, IL_4BPP_067, IL_4A1C_003, IL_4A1C_002, IL_2BU1_001, IL_3R2D_001, IL_1DUQ_002, IL_1MJI_001, IL_2AW7_017, IL_4A1B_011, IL_4A1B_010, IL_3U5H_142, IL_3U5H_143, IL_3U5H_140, IL_2AW7_019, IL_4IOA_034, IL_3UCZ_002, IL_3W3S_001, IL_3W3S_002, IL_2QBG_104, IL_3U5F_009, IL_4NVV_040, IL_1FJG_001, IL_1S72_002, IL_2BQ5_001, IL_3U5F_001, IL_3D0U_001, IL_2IZN_001, IL_3U5H_013, IL_2A64_003, IL_2A64_002, IL_2IZM_001, IL_4BPP_009, IL_1MFQ_005, IL_1U63_002, IL_4C7O_004, IL_1VW3_055, IL_4C7O_001, IL_1VW3_052, IL_1FJG_016, IL_3U5H_034, IL_1FJG_014, IL_3U5H_030, IL_2PJP_001, IL_4A1B_123, IL_3U5H_136, IL_4A1B_121, IL_1U9S_001, IL_3DIR_005, IL_3U5H_131, IL_3U5H_039, IL_3U5F_016, IL_1S03_006, IL_1S03_005, IL_1S72_010, IL_3U5F_018, IL_1S72_014, IL_4B5R_001, IL_1R3E_002, IL_1FJG_007, IL_4NVV_037, IL_3IVK_003, IL_4NVV_058, IL_4A1B_095, IL_2IZ9_001, IL_4A1B_091, IL_2ZY6_002, IL_4A1B_039, IL_4LVZ_002, IL_2QBG_070, IL_1ET4_004, IL_4A1B_031, IL_4NVV_097, IL_4A1B_036, IL_4IOA_011, IL_4IOA_016, IL_3U5H_129, IL_1FJG_002, IL_4IOA_015, IL_397D_001, IL_3U5H_125, IL_4NVV_047, IL_3OWZ_005, IL_1VW3_041, IL_1FJG_043, IL_4FRG_002, IL_3MEI_001, IL_1S72_027, IL_1S72_026, IL_3U5F_069, IL_1S72_064, IL_4NVV_021, IL_4NVV_022, IL_3P49_003, IL_4A1B_088, IL_1GID_012, IL_1X8W_001, IL_4A1B_084, IL_4BPP_053, IL_4BPP_055, IL_4BPP_054, IL_3U5F_058, IL_2AW7_048, IL_4NVV_080, IL_1DQH_001, IL_3U5F_066, IL_2AW7_043, IL_4BPP_030, IL_1FJG_035, IL_4A1B_023, IL_1FJG_036, IL_3WBM_001, IL_4IOA_064, IL_4A1B_105, IL_2QUX_002, IL_3UCZ_003, IL_2VPL_002, IL_1GID_002, IL_4A1B_101, IL_4A1B_100, IL_4A1B_076, IL_4NVV_069, IL_3U5H_050, IL_1FUF_002, IL_1FUF_003, IL_3U5H_055, IL_3U5H_058, IL_4A1B_006, IL_2QBG_038, IL_1NBS_009, IL_1F7Y_002, IL_1NBS_001, IL_1NBS_002, IL_4AOB_001, IL_3DHS_002, IL_1NBS_005, IL_1JZV_005	IL_4CUV_042, IL_4CUV_037, IL_4CUV_149, IL_4CUV_101, IL_4CUV_023, IL_4CUV_142, IL_4CUV_146, IL_4CUV_029, IL_4A1B_113, IL_1S72_086, IL_4CUV_093, IL_4CUX_025, IL_4CUV_094, IL_4CUV_097, IL_4CUX_063, IL_4CUX_066, IL_4CUX_001, IL_4CUV_065, IL_4CUV_136, IL_4CUV_134, IL_4CUV_017, IL_4CUV_016, IL_4CUV_158, IL_4CUV_034, IL_4CUV_059, IL_4CUV_150, IL_4CUV_056, IL_4CUV_051, IL_4CUV_076, IL_4CUV_119, IL_3U5H_115, IL_4CUX_031, IL_4CUX_017, IL_4O26_001, IL_4CUV_089, IL_4CUX_053, IL_4CUV_130, IL_4CUV_123, IL_4CUV_002, IL_4CUV_003	IL_1U9S_006, IL_3D0U_005, IL_4IOA_101, IL_2QBG_107
IL_37056.1 Compare	IL_4A1B_113, IL_3U5H_115, IL_1S72_086	IL_4CUX_001, IL_4CUV_149, IL_4A1B_123, IL_4FAW_004, IL_4CUV_023, IL_4L8H_001, IL_4BPP_022, IL_3SN2_001, IL_4BPP_024, IL_4CUV_029, IL_2AW7_051, IL_4IOA_075, IL_4A1B_059, IL_3U5H_105, IL_4A1B_116, IL_3U5H_103, IL_3DIR_001, IL_4A1B_051, IL_4A1B_050, IL_4A1B_056, IL_2C50_001, IL_3U5H_065, IL_1VW3_064, IL_1VW3_067, IL_3D2V_001, IL_1VW3_060, IL_1S72_040, IL_4NVV_002, IL_4A1B_044, IL_4CUX_066, IL_3GX5_001, IL_3U5H_077, IL_4IOA_002, IL_3TZR_002, IL_4CUV_142, IL_4CUV_136, IL_4CUV_134, IL_4A1B_124, IL_4CUV_130, IL_4CUV_158, IL_4NVV_069, IL_2PN4_003, IL_1CSL_002, IL_4CUV_150, IL_4BPP_016, IL_3U5F_024, IL_4BPP_013, IL_4BPP_025, IL_1GID_009, IL_3U5F_059, IL_3U5F_056, IL_1GID_005, IL_1ET4_002, IL_2AW7_026, IL_1S72_030, IL_4CUX_017, IL_4NVV_076, IL_3B31_001, IL_3U5H_089, IL_2XXA_010, IL_3U5H_025, IL_2XXA_012, IL_1VW3_088, IL_4IOA_071, IL_2NOK_006, IL_4CUV_037, IL_4CUV_101, IL_1I9X_001, IL_2NOK_003, IL_2QBG_080, IL_1I9X_002, IL_4IOA_057, IL_3U5H_026, IL_4BPP_075, IL_2QBG_089, IL_3SNP_001, IL_3U5H_143, IL_1FJG_040, IL_2QBG_007, IL_1FJG_043, IL_3U5H_003, IL_3U5H_002, IL_1GID_012, IL_4A1B_072, IL_4CUV_093, IL_1S72_088, IL_4CUV_094, IL_1S72_104, IL_6MSF_001, IL_3U5F_026, IL_1U9S_001, IL_1VW3_087, IL_3Q1Q_004, IL_3IWN_004, IL_3IWN_003, IL_1VW3_082, IL_4NVV_104, IL_2AW7_043, IL_4CUV_017, IL_4CUV_016, IL_2OIU_003, IL_2OIU_001, IL_4BPP_030, IL_4BPP_072, IL_4LGT_002, IL_4CUV_076, IL_4CUX_025, IL_1VW3_018, IL_1VW3_019, IL_2C4Z_001, IL_3U5H_014, IL_1S72_077, IL_1S72_074, IL_1FJG_036, IL_2AW7_001, IL_4BPP_021, IL_1S72_070, IL_2AW7_002, IL_4CUX_031, IL_3U5H_119, IL_3U5H_152, IL_2QBG_073, IL_3U5F_031, IL_4O26_001, IL_2QBG_023, IL_2QBG_076, IL_4CUV_089, IL_3OWZ_005, IL_1VW3_052, IL_1JZV_002, IL_3OWZ_001, IL_1VW3_091, IL_3U5H_092, IL_4CUX_063, IL_3SUX_001, IL_1R3E_001, IL_3U5H_098, IL_4CUV_003, IL_2AW7_008, IL_4BPP_064, IL_4A1B_039, IL_4BPP_067, IL_3U5H_030, IL_4A1C_003, IL_4A1C_002, IL_1VW3_069, IL_2BU1_001, IL_4CUV_146, IL_4CUV_065, IL_3UCZ_003, IL_1DUQ_002, IL_1MJI_001, IL_2AW7_017, IL_4A1B_011, IL_4A1B_010, IL_3U5H_142, IL_1VW3_028, IL_3U5H_140, IL_2AW7_019, IL_4IOA_034, IL_3UCZ_002, IL_3W3S_001, IL_3W3S_002, IL_2QBG_104, IL_3U5F_009, IL_4NVV_040, IL_1FJG_001, IL_1S72_002, IL_3DHS_003, IL_3U5F_001, IL_3D0U_001, IL_3U5H_093, IL_2IZN_001, IL_3U5H_013, IL_2A64_003, IL_2A64_002, IL_2IZM_001, IL_4BPP_009, IL_4CUV_059, IL_1U63_002, IL_4C7O_004, IL_4CUV_056, IL_4C7O_001, IL_1FUF_002, IL_1FJG_016, IL_3U5H_034, IL_1FJG_014, IL_1S72_096, IL_2PJP_001, IL_2BQ5_001, IL_3U5H_136, IL_4A1B_121, IL_3U5H_055, IL_3DIR_005, IL_3U5H_131, IL_3U5H_039, IL_3U5F_016, IL_1S03_006, IL_1S03_005, IL_1S72_010, IL_3U5F_018, IL_4BPP_055, IL_1S72_014, IL_1GID_002, IL_1R3E_002, IL_4CUX_053, IL_4CUV_097, IL_4IOA_011, IL_4NVV_037, IL_3IVK_003, IL_4NVV_058, IL_4ANG_001, IL_4A1B_095, IL_2IZ9_001, IL_4A1B_091, IL_2ZY6_002, IL_4CUV_042, IL_1U9S_003, IL_4LVZ_002, IL_2QBG_070, IL_1ET4_004, IL_4B5R_001, IL_4A1B_031, IL_4NVV_097, IL_4A1B_036, IL_1FJG_007, IL_4IOA_016, IL_3U5H_129, IL_1FJG_002, IL_4IOA_015, IL_397D_001, IL_4A1B_131, IL_4NVV_047, IL_3U5H_094, IL_1VW3_041, IL_1VW3_004, IL_4FRG_002, IL_3MEI_001, IL_3U5H_125, IL_1S72_027, IL_1S72_026, IL_3U5F_069, IL_1S72_064, IL_1MFQ_005, IL_4NVV_021, IL_4NVV_022, IL_3P49_003, IL_4A1B_088, IL_1S72_067, IL_1X8W_001, IL_4A1B_084, IL_4BPP_053, IL_4IOA_031, IL_4BPP_054, IL_3U5F_058, IL_2AW7_048, IL_4NVV_080, IL_4CUV_034, IL_1DQH_001, IL_2QBG_069, IL_3U5F_066, IL_2QBG_099, IL_4CUV_051, IL_4BPP_031, IL_2AW7_042, IL_1FJG_035, IL_4A1B_023, IL_4CUV_119, IL_3WBM_001, IL_4IOA_064, IL_4A1B_105, IL_4CUV_123, IL_2QUX_002, IL_3R2D_001, IL_2VPL_002, IL_4A1B_101, IL_4A1B_100, IL_4A1B_076, IL_2PLY_002, IL_3U5H_050, IL_2QBG_035, IL_1FUF_003, IL_1VW3_055, IL_3U5H_058, IL_4CUV_002, IL_4A1B_006, IL_2QBG_038, IL_1NBS_009, IL_1F7Y_002, IL_1NBS_001, IL_1NBS_002, IL_4AOB_001, IL_3DHS_002, IL_1NBS_005, IL_1JZV_005	IL_1S72_045, IL_2QBG_097, IL_2QBG_022, IL_4BPP_033, IL_4NVV_094, IL_3U5F_033, IL_4OO8_002, IL_3SN2_002, IL_3U5H_031, IL_3SNP_002, IL_1VW3_080, IL_4IOA_092, IL_4IOA_024

Children motifs

Child motif	Common motif instances	Only in IL_97217.13	Only in the child motif
IL_48256.1 Compare	IL_4CUX_001, IL_4CUV_149, IL_4A1B_123, IL_4FAW_004, IL_4CUV_023, IL_4L8H_001, IL_4BPP_022, IL_3SN2_001, IL_4BPP_024, IL_4CUV_029, IL_2AW7_051, IL_4IOA_075, IL_4A1B_059, IL_3U5H_105, IL_4A1B_116, IL_3U5H_103, IL_3DIR_001, IL_4A1B_051, IL_4A1B_050, IL_4A1B_056, IL_2C50_001, IL_3U5H_065, IL_1VW3_064, IL_1VW3_067, IL_3D2V_001, IL_4CUV_101, IL_1S72_040, IL_4A1B_044, IL_4CUX_066, IL_3GX5_001, IL_3U5H_077, IL_4IOA_002, IL_3TZR_002, IL_4CUV_142, IL_4CUV_136, IL_4CUV_134, IL_4A1B_124, IL_4CUV_130, IL_4CUV_158, IL_2PN4_003, IL_1CSL_002, IL_4CUV_150, IL_4BPP_016, IL_3U5F_024, IL_4BPP_013, IL_4BPP_025, IL_1GID_009, IL_3U5F_059, IL_3U5F_056, IL_1GID_005, IL_1ET4_002, IL_2AW7_026, IL_1S72_030, IL_4A1B_113, IL_4CUX_017, IL_4BPP_055, IL_3B31_001, IL_3U5H_089, IL_2XXA_010, IL_2XXA_012, IL_1VW3_088, IL_2AW7_017, IL_2NOK_006, IL_4CUV_037, IL_1I9X_001, IL_2NOK_003, IL_2QBG_080, IL_1I9X_002, IL_4IOA_057, IL_3U5H_026, IL_4BPP_075, IL_2QBG_089, IL_3SNP_001, IL_3U5H_143, IL_1FJG_040, IL_2QBG_007, IL_1FJG_043, IL_3U5H_003, IL_3U5H_002, IL_1GID_012, IL_4A1B_072, IL_4CUV_093, IL_1S72_088, IL_4CUV_094, IL_1S72_104, IL_6MSF_001, IL_3U5F_026, IL_1U9S_001, IL_1VW3_087, IL_3Q1Q_004, IL_3IWN_004, IL_3IWN_003, IL_1VW3_082, IL_2AW7_043, IL_4CUV_017, IL_4CUV_016, IL_2OIU_003, IL_2OIU_001, IL_4BPP_030, IL_4BPP_072, IL_4LGT_002, IL_4CUV_076, IL_4CUX_025, IL_1VW3_018, IL_1VW3_019, IL_2C4Z_001, IL_3U5H_014, IL_1S72_077, IL_1S72_074, IL_1FJG_036, IL_2AW7_001, IL_4BPP_021, IL_2AW7_002, IL_4CUX_031, IL_3U5H_119, IL_3U5H_152, IL_2QBG_073, IL_3U5F_031, IL_4O26_001, IL_2QBG_023, IL_4CUV_089, IL_3OWZ_005, IL_1VW3_052, IL_1JZV_002, IL_3OWZ_001, IL_1VW3_091, IL_3U5H_092, IL_4CUX_063, IL_3SUX_001, IL_1R3E_001, IL_3U5H_098, IL_4CUV_003, IL_2AW7_008, IL_4BPP_064, IL_4A1B_039, IL_4BPP_067, IL_3U5H_030, IL_4A1C_003, IL_4A1C_002, IL_1VW3_069, IL_2BU1_001, IL_4CUV_146, IL_4CUV_065, IL_3UCZ_003, IL_1DUQ_002, IL_3U5H_025, IL_1S72_086, IL_4A1B_011, IL_4A1B_010, IL_3U5H_142, IL_1VW3_028, IL_3U5H_140, IL_2AW7_019, IL_4IOA_034, IL_3UCZ_002, IL_3W3S_001, IL_3W3S_002, IL_2QBG_104, IL_3U5F_009, IL_1FJG_001, IL_1S72_002, IL_4A1B_105, IL_3DHS_003, IL_3U5F_001, IL_3D0U_001, IL_3U5H_093, IL_2IZN_001, IL_3U5H_013, IL_2A64_003, IL_2A64_002, IL_2IZM_001, IL_4BPP_009, IL_4CUV_059, IL_1U63_002, IL_4C7O_004, IL_4CUV_056, IL_4C7O_001, IL_1FUF_002, IL_1FJG_016, IL_3U5H_034, IL_1FJG_014, IL_1S72_096, IL_2PJP_001, IL_2BQ5_001, IL_3U5H_136, IL_4A1B_121, IL_3U5H_055, IL_3DIR_005, IL_3U5H_131, IL_3U5H_039, IL_3U5F_016, IL_1S03_006, IL_1S03_005, IL_1S72_010, IL_3U5F_018, IL_1S72_014, IL_1GID_002, IL_1R3E_002, IL_4CUX_053, IL_4IOA_011, IL_3IVK_003, IL_4A1B_095, IL_2IZ9_001, IL_2ZY6_002, IL_4CUV_042, IL_1U9S_003, IL_4LVZ_002, IL_2QBG_070, IL_1ET4_004, IL_4B5R_001, IL_4A1B_031, IL_4ANG_001, IL_4A1B_036, IL_1FJG_007, IL_4IOA_016, IL_3U5H_129, IL_1FJG_002, IL_4IOA_015, IL_4A1B_131, IL_3U5F_066, IL_1VW3_041, IL_1VW3_004, IL_4FRG_002, IL_3MEI_001, IL_3U5H_125, IL_1S72_027, IL_1S72_026, IL_3U5F_069, IL_1S72_064, IL_1MFQ_005, IL_2QBG_099, IL_3P49_003, IL_4A1B_088, IL_1S72_067, IL_1X8W_001, IL_4A1B_084, IL_4BPP_053, IL_4IOA_031, IL_4BPP_054, IL_3U5F_058, IL_2AW7_048, IL_4CUV_034, IL_1DQH_001, IL_2QBG_069, IL_4CUV_051, IL_4BPP_031, IL_2AW7_042, IL_1FJG_035, IL_4A1B_023, IL_4CUV_119, IL_3WBM_001, IL_4IOA_064, IL_3U5H_115, IL_4CUV_123, IL_2QUX_002, IL_3R2D_001, IL_2VPL_002, IL_4A1B_101, IL_4A1B_100, IL_4A1B_076, IL_2PLY_002, IL_3U5H_050, IL_2QBG_035, IL_1FUF_003, IL_1VW3_055, IL_3U5H_058, IL_4CUV_002, IL_4A1B_006, IL_2QBG_038, IL_1NBS_009, IL_1F7Y_002, IL_1NBS_001, IL_1NBS_002, IL_4AOB_001, IL_3DHS_002, IL_1NBS_005, IL_1JZV_005	IL_4NVV_047, IL_4NVV_080, IL_1VW3_060, IL_4NVV_040, IL_4NVV_002, IL_4NVV_076, IL_4NVV_097, IL_4NVV_058, IL_2QBG_076, IL_4A1B_091, IL_4CUV_097, IL_3U5H_094, IL_4NVV_021, IL_4NVV_022, IL_1MJI_001, IL_4IOA_071, IL_4NVV_104, IL_397D_001, IL_4NVV_037, IL_1S72_070, IL_4NVV_069	IL_1VX6_116, IL_1VX6_014, IL_4QCN_098, IL_1VX6_135, IL_1VWW_017, IL_1VX6_138, IL_1FJG_022, IL_4CUV_108, IL_1VX6_040, IL_1VX6_090, IL_1VX6_093, IL_3J7A_009, IL_1VX2_030, IL_1VWW_014, IL_3J7A_021, IL_4QCN_020, IL_4QCN_044, IL_1VWW_080, IL_4QCN_068, IL_1VX6_016, IL_3J7A_027, IL_4QCN_002, IL_4QCN_065, IL_1VWW_062, IL_1VWW_065, IL_3J7A_052, IL_3J7A_001, IL_1VX2_057, IL_1VX6_061, IL_1VWW_001, IL_3J7A_041, IL_1VWW_101, IL_1VWW_029, IL_1VWW_104, IL_1VX6_066, IL_1VX6_103, IL_1VX6_100, IL_1VWW_123, IL_4QCN_037, IL_1VWW_023, IL_1VX6_105, IL_4KZD_001, IL_1VX6_001, IL_1VX6_026, IL_1VX6_140, IL_1VX6_126, IL_1VWW_158, IL_4BPP_033, IL_1VX6_119, IL_1VWW_134, IL_2AW7_029, IL_1VWW_045, IL_1VX6_033, IL_3J7A_025, IL_1VX2_022, IL_1VX2_024, IL_4IOA_024, IL_1VWW_090, IL_4CUX_030, IL_4QCN_076, IL_4QCN_055, IL_1VX6_044, IL_1VWW_079, IL_3J7A_014, IL_1VX6_036, IL_1VX6_129, IL_3U5F_033, IL_1VWW_155, IL_1VX2_060, IL_3J7A_051, IL_1VWW_056, IL_1VWW_031, IL_1VX6_058, IL_1VWW_118, IL_3J7A_056, IL_4QCN_034, IL_1VX6_032, IL_3J7A_059, IL_1VWW_131, IL_1VX6_057, IL_4QCN_019, IL_1VX6_037, IL_1VX6_053
IL_82822.1 Compare	IL_1VW3_060, IL_4CUV_097, IL_2QBG_076, IL_3U5H_094, IL_1MJI_001, IL_4IOA_071, IL_397D_001, IL_4A1B_091, IL_1S72_070	IL_4CUX_001, IL_4CUV_149, IL_4A1B_123, IL_4FAW_004, IL_4CUV_023, IL_4L8H_001, IL_4BPP_022, IL_3SN2_001, IL_4BPP_024, IL_4CUV_029, IL_2AW7_051, IL_4IOA_075, IL_4A1B_059, IL_3U5H_105, IL_4A1B_116, IL_3U5H_103, IL_3DIR_001, IL_4A1B_051, IL_4A1B_050, IL_4A1B_056, IL_2C50_001, IL_3U5H_065, IL_1VW3_064, IL_1VW3_067, IL_3D2V_001, IL_4CUV_101, IL_1S72_040, IL_4NVV_002, IL_4A1B_044, IL_4CUX_066, IL_3GX5_001, IL_3U5H_077, IL_4IOA_002, IL_3TZR_002, IL_4CUV_142, IL_4CUV_136, IL_4CUV_134, IL_4A1B_124, IL_4CUV_130, IL_4CUV_158, IL_4NVV_069, IL_2PN4_003, IL_1CSL_002, IL_4CUV_150, IL_4BPP_016, IL_3U5F_024, IL_4BPP_013, IL_4BPP_025, IL_1GID_009, IL_3U5F_059, IL_3U5F_056, IL_1GID_005, IL_1ET4_002, IL_2AW7_026, IL_1S72_030, IL_4A1B_113, IL_4CUX_017, IL_4NVV_076, IL_3B31_001, IL_3U5H_089, IL_2XXA_010, IL_2XXA_012, IL_1VW3_088, IL_2AW7_017, IL_2NOK_006, IL_4CUV_037, IL_1I9X_001, IL_2NOK_003, IL_2QBG_080, IL_1I9X_002, IL_4IOA_057, IL_3U5H_026, IL_4BPP_075, IL_2QBG_089, IL_3SNP_001, IL_3U5H_143, IL_1FJG_040, IL_2QBG_007, IL_1FJG_043, IL_3U5H_003, IL_3U5H_002, IL_1GID_012, IL_4A1B_072, IL_4CUV_093, IL_1S72_088, IL_4CUV_094, IL_1S72_104, IL_6MSF_001, IL_3U5F_026, IL_1U9S_001, IL_1VW3_087, IL_3Q1Q_004, IL_3IWN_004, IL_3IWN_003, IL_1VW3_082, IL_4NVV_104, IL_2AW7_043, IL_4CUV_017, IL_4CUV_016, IL_2OIU_003, IL_2OIU_001, IL_4BPP_030, IL_4BPP_072, IL_4LGT_002, IL_4CUV_076, IL_4CUX_025, IL_1VW3_018, IL_1VW3_019, IL_2C4Z_001, IL_3U5H_014, IL_1S72_077, IL_1S72_074, IL_1FJG_036, IL_2AW7_001, IL_4BPP_021, IL_2AW7_002, IL_4CUX_031, IL_3U5H_119, IL_3U5H_152, IL_2QBG_073, IL_3U5F_031, IL_4O26_001, IL_2QBG_023, IL_4NVV_047, IL_4CUV_089, IL_3OWZ_005, IL_1VW3_052, IL_1JZV_002, IL_3OWZ_001, IL_1VW3_091, IL_3U5H_092, IL_4CUX_063, IL_3SUX_001, IL_1R3E_001, IL_3U5H_098, IL_4CUV_003, IL_2AW7_008, IL_4BPP_064, IL_4A1B_039, IL_4BPP_067, IL_3U5H_030, IL_4A1C_003, IL_4A1C_002, IL_1VW3_069, IL_2BU1_001, IL_4CUV_146, IL_4CUV_065, IL_3UCZ_003, IL_1DUQ_002, IL_3U5H_025, IL_1S72_086, IL_4A1B_011, IL_4A1B_010, IL_3U5H_142, IL_1VW3_028, IL_3U5H_140, IL_2AW7_019, IL_4IOA_034, IL_3UCZ_002, IL_3W3S_001, IL_3W3S_002, IL_2QBG_104, IL_3U5F_009, IL_4NVV_040, IL_1FJG_001, IL_1S72_002, IL_4A1B_105, IL_3DHS_003, IL_3U5F_001, IL_3D0U_001, IL_3U5H_093, IL_2IZN_001, IL_3U5H_013, IL_2A64_003, IL_2A64_002, IL_2IZM_001, IL_4BPP_009, IL_4CUV_059, IL_1U63_002, IL_4C7O_004, IL_4CUV_056, IL_4C7O_001, IL_1FUF_002, IL_1FJG_016, IL_3U5H_034, IL_1FJG_014, IL_1S72_096, IL_2PJP_001, IL_2BQ5_001, IL_3U5H_136, IL_4A1B_121, IL_3U5H_055, IL_3DIR_005, IL_3U5H_131, IL_3U5H_039, IL_3U5F_016, IL_1S03_006, IL_1S03_005, IL_1S72_010, IL_3U5F_018, IL_4BPP_055, IL_1S72_014, IL_1GID_002, IL_1R3E_002, IL_4CUX_053, IL_4IOA_011, IL_4NVV_037, IL_3IVK_003, IL_4NVV_058, IL_4A1B_095, IL_2IZ9_001, IL_4ANG_001, IL_2ZY6_002, IL_4CUV_042, IL_1U9S_003, IL_4LVZ_002, IL_2QBG_070, IL_1ET4_004, IL_4B5R_001, IL_4A1B_031, IL_4NVV_097, IL_4A1B_036, IL_1FJG_007, IL_4IOA_016, IL_3U5H_129, IL_1FJG_002, IL_4IOA_015, IL_4A1B_131, IL_3U5F_066, IL_1VW3_041, IL_1VW3_004, IL_4FRG_002, IL_3MEI_001, IL_3U5H_125, IL_1S72_027, IL_1S72_026, IL_3U5F_069, IL_1S72_064, IL_1MFQ_005, IL_4NVV_021, IL_4NVV_022, IL_3P49_003, IL_4A1B_088, IL_1S72_067, IL_1X8W_001, IL_4A1B_084, IL_4BPP_053, IL_4IOA_031, IL_4BPP_054, IL_3U5F_058, IL_2AW7_048, IL_4NVV_080, IL_4CUV_034, IL_1DQH_001, IL_2QBG_069, IL_2QBG_099, IL_4CUV_051, IL_4BPP_031, IL_2AW7_042, IL_1FJG_035, IL_4A1B_023, IL_4CUV_119, IL_3WBM_001, IL_4IOA_064, IL_3U5H_115, IL_4CUV_123, IL_2QUX_002, IL_3R2D_001, IL_2VPL_002, IL_4A1B_101, IL_4A1B_100, IL_4A1B_076, IL_2PLY_002, IL_3U5H_050, IL_2QBG_035, IL_1FUF_003, IL_1VW3_055, IL_3U5H_058, IL_4CUV_002, IL_4A1B_006, IL_2QBG_038, IL_1NBS_009, IL_1F7Y_002, IL_1NBS_001, IL_1NBS_002, IL_4AOB_001, IL_3DHS_002, IL_1NBS_005, IL_1JZV_005	IL_4CUV_143, IL_1FJG_005, IL_4FAW_014, IL_2AW7_005, IL_1VX6_096, IL_2QBG_107, IL_1VWW_081, IL_1S72_042, IL_3U5H_063, IL_2QBG_060, IL_3D0U_005, IL_1S72_022, IL_4QCN_108, IL_2NZ4_007, IL_4C7O_003, IL_4A1B_063, IL_4IOA_101, IL_3U5H_137, IL_1S72_099, IL_4QCN_058, IL_3J7A_076, IL_4QCN_072, IL_1U9S_006, IL_3U5H_019

Annotations: (217)
Single bulged A (20)
Single bulged U (17)
Single bulged A (H) (9)
Single bulged C (7)
Multiple bulged bases (7)
Single bulged U (H) (6)
Major groove intercalation (4)
Single bulged G (H) (4)
Single bulged G (4)
Major groove intercalation (H) (2)
Multiple bulged bases (H) (1)
Basepair signature: cWW-cWW
Heat map statistics: Min 0.04 | Avg 0.44 | Max 1.00

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Coloring options: Nucleotide numbers

Motif IL_97217.13 Version IL_97217.13 of this group appears in releases 1.15 to 1.15 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_97217.13 Version IL_97217.13 of this group appears in releases 1.15 to 1.15

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