#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3break 4 5 61-51-62-52-63-43-5
1 IL_7KJT_0017KJT0.27580Isolated non-canonical cWWA tRNAG2C3C4*G69C70C71cWWncWW
2 IL_4AOB_0054AOB0.21890Isolated non-canonical cWWA SAM-I riboswitchC78G79U80*G71A72G73cWWncWWcWW
3 IL_7MLW_0017MLW0.18810Isolated non-canonical cWWFGuanidine-I riboswitchU4C5G6*C57A58A59cWWcWWacWW
4 IL_5TBW_1105TBW0.16500Isolated non-canonical cWW1 LSU rRNAC2889A2890U2891*G2912C2913G2914cWWncWWacWW
5 IL_8C3A_1188C3A0.16100Isolated non-canonical cWW1 LSU rRNAC2861A2862U2863*G2884C2885G2886cWWncWWcWW
6 IL_4YHW_0024YHW0.17720Isolated non-canonical cWWD+FU4 snRNA fragment + U6 snRNA fragmentA11C12G13*C68C69U70cWWcWW
7 IL_4YHW_0014YHW0.15660Isolated non-canonical cWWE+CU6 snRNA fragmentC68C69U70*A11C12G13cWWcWW
8 IL_8VTW_0338VTW0.19760Isolated non-canonical cWW1A LSU rRNAU963C964C965*G952A953G954cWWcWWcWW
9 IL_7A0S_0317A0S0.20830Isolated non-canonical cWWX LSU rRNAU974C975C976*G963A964G965cWWcWWcWW
10 IL_8E0F_0028E0F0.23440Isolated non-canonical cWWC+DRNA (32-mer)G14A15G16*C17C18C19cWWcWWcWW
11 IL_8E4X_0018E4X0.22350Isolated non-canonical cWWC+DRNA (32-mer)G14A15G16*C17C18C19cWWcWWcWW
12 IL_5C5W_0025C5W0.23940Isolated non-canonical cWWARNA (19-mer)U9||AC10||AA11||A*U9||A||5_556C10||A||5_556A11||A||5_556cWWcWW
13 IL_1Y27_0011Y270.26460Isolated non-canonical cWWXPurine riboswitchC43A44A45*U25C26G27cWWcWWcWW
14 IL_1Z7F_0061Z7F0.26850Isolated non-canonical cWWB+CRNA (16-mer)A10A11U12*A21C22U23cWWcWWcWW
15 IL_7ECK_0137ECK0.22450Isolated non-canonical cWWJ+IDNA/RNA (5'-R(*GP*GP*AP*CP*U)-D(P*(CBR))-R(P*GP*AP*AP*UP*CP*C)-3')A8A9U10*A3C4U5cWWncWWacWW
16 IL_7ECK_0157ECK0.21600Isolated non-canonical cWWI+JDNA/RNA (5'-R(*GP*GP*AP*CP*U)-D(P*(CBR))-R(P*GP*AP*AP*UP*CP*C)-3')A8A9U10*A3C4U5ncWWncWWacWW
17 IL_7ECN_0017ECN0.23000Isolated non-canonical cWWB+ARNA (12-mer)G8A9C10*G3C4C5cWWcWW
18 IL_7ECN_0027ECN0.30710Isolated non-canonical cWWA+BRNA (12-mer)G8A9C10*G3C4C5cWWcWW
19 IL_7VFT_0047VFT0.35990Isolated non-canonical cWWARNA (23-mer)C8A9G10*C14||||12_555A15||||12_555G16||||12_555cWWcWW
20 IL_7VFT_0027VFT0.35990Isolated non-canonical cWWARNA (23-mer)C8||||12_555A9||||12_555G10||||12_555*C14A15G16cWWcWW
21 IL_4V9F_0774V9F0.41360Isolated near basepair0 LSU rRNAG2237A2238C2239*G2136A2137C2138cWWncWW
22 IL_3NJ7_0033NJ70.48980Isolated near basepairC+DRNA (10-mer)C3A4G5*C6A7G8cWWcWW
23 IL_3NJ7_0043NJ70.48670Isolated near basepairD+CRNA (10-mer)C3A4G5*C6A7G8cWWcWW
24 IL_8C3A_4148C3A0.46260Isolated non-canonical cWWCM SSU rRNAA418A419G420*C409A410U411cWWcWW
25 IL_4V88_4064V880.46480Isolated near basepairA6 SSU rRNAA420A421G422*C411A412U413cWWcWW
26 IL_5H1K_0015H1K0.37200Isolated non-canonical cWWC+DU4 snRNA (13-mer)G7A8C9*G7A8C9cWWcWW
27 IL_7VFT_0037VFT0.34360Isolated non-canonical cWWARNA (23-mer)C11A12G13*C11||||12_555A12||||12_555G13||||12_555cWWcWW
28 IL_4J50_0024J500.31400Isolated non-canonical cWWA+BRNA (19-mer)C10A11G12*C10A11G12cWWcWW
29 IL_8C3A_4748C3A0.33380Isolated non-canonical cWWCM SSU rRNAU1637A1638C1639*G1735A1736A1737cWWncWwcWW
30 IL_5ED1_0025ED10.25610Isolated non-canonical cWWB+CRNA (23-mer)G13A14C15*G9A10C11cWWcWwcWW
31 IL_4V88_4194V880.33670Isolated non-canonical cWWA6 SSU rRNAC646G647G648*C686G687G688cWWcWW
32 IL_5UNE_0045UNE0.30030Isolated non-canonical cWWA+BRNA (47-MER)U16A17G18*C27A28G29cWWcWwcWW
33 IL_7LYF_0027LYF0.29810Isolated non-canonical cWWA tRNAU46G47G48*C84A85A86cWWncWWncWW
34 IL_4LFB_0064LFB0.37450Isolated non-canonical cWWA SSU rRNAC67G68G69*C99A101G102cWWcWWcWW
35 IL_5J7L_0615J7L0.34010Isolated non-canonical cWWAA SSU rRNAC1412A1413U1414*G1486G1487G1488cWWcWWcWW
36 IL_4LFB_0594LFB0.36900Isolated non-canonical cWWA SSU rRNAC1412A1413U1414*G1486G1487G1488cWWcWWcWW
37 IL_5TBW_0425TBW0.33690Isolated non-canonical cWW1 LSU rRNAU1039A1040U1041*A1009G1010A1011cWWcWWcWW
38 IL_8C3A_0458C3A0.35340Isolated non-canonical cWW1 LSU rRNAU1035A1036U1037*A1005G1006A1007cWWcWWcWW
39 IL_8C3A_4598C3A0.38230Isolated non-canonical cWWCM SSU rRNAC1308G1309A1310*U1275G1276G1277cWWcWW
40 IL_5TBW_3785TBW0.33681Isolated non-canonical cWWAS 5S rRNAC94A95U96*A84G85G87cWWcWWcWW
41 IL_8C3A_1498C3A0.32791Isolated non-canonical cWW3 5S rRNAC94A95U96*A84G85G87cWWcWWcWW
42 IL_4R4V_0064R4V0.34502Isolated non-canonical cWWAVS ribozyme RNAG724A725C726*G749G752C753cWWcWWcWW
43 IL_5UNE_0075UNE0.29740Isolated non-canonical cWWA+BRNA (47-MER)G31G32C33*G12G13C14cWWncWW
44 IL_5UNE_0035UNE0.27260Isolated non-canonical cWWB+ARNA (47-MER)G31G32C33*G12G13C14cWWcWW
45 IL_8AF0_0018AF00.17730Isolated non-canonical cWWD+CRNA (19-mer)A37C38G39*C31C32U33cWWcWW
46 IL_4V88_4674V880.28570Isolated non-canonical cWWA6 SSU rRNAU1650A1651C1652*G1748A1749A1750cWWcWwcWW
47 IL_6CZR_4116CZR0.30990Isolated non-canonical cWW1a SSU rRNAC1395A1396U1397*G1464G1465G1466cWWcWWncWWa
48 IL_8D29_0018D290.32220Isolated non-canonical cWWCRNA (34-MER)G4A5U6*A29G30C31cWWcWWncWW
49 IL_5MSF_0015MSF0.28191Isolated non-canonical cWWRRNA (18-mer)C13||||P_1A14||||P_1C15||||P_1*G3||||P_1G4||||P_1G6||||P_1cWWcWWcWW
50 IL_3DIL_0063DIL0.30950Isolated non-canonical cWWARNA (174-MER)G115G116G117*C137A138C139cWWcWWcWW
51 IL_3D0U_0063D0U0.29500Isolated non-canonical cWWALysine Riboswitch RNAG112G113G114*C134A135C136cWWcWWcWW
52 IL_5TBW_1275TBW0.32670Isolated non-canonical cWW1 LSU rRNAC3233A3234C3235*G3252G3253G3254cWWcWWcWW
53 IL_4M4O_0024M4O0.27620Isolated non-canonical cWWBRNA (59-MER)G46A47C48*G12G13C14cWWcWWcWW
54 IL_8C3A_0748C3A0.29360Isolated non-canonical cWW1 LSU rRNAG1782A1783C1784*G1657G1658C1659cWWcWWcWW
55 IL_2R8S_0012R8S0.30750Isolated non-canonical cWWRP4-P6 RNA RIBOZYME DOMAING110G111G112*C208A210C211cWWcWWcWW
56 IL_5TBW_0685TBW0.31940Isolated non-canonical cWW1 LSU rRNAG1786A1787C1788*G1661G1662C1663cWWcWWcWW
57 IL_4V88_4724V880.36000Isolated non-canonical cWWA6 SSU rRNAG1727A1728C1729*G1672G1673C1674cWWcWWcWW
58 IL_3IVK_0023IVK0.35190Isolated non-canonical cWWMclass I ligase productA102A103C104*G87G88U89cWWcWWcWWncWW
59 IL_3HHN_0043HHN0.31120Isolated non-canonical cWWEClass I ligase ribozyme, self-ligation productA102A103C104*G87G88U89cWWcWWcWW
60 IL_6CZR_1186CZR0.35930Isolated non-canonical cWW1a SSU rRNAC68G69G70*C94A95G96cWWncWWcWW
61 IL_4M6D_0114M6D0.32130Isolated non-canonical cWWHaptamerG46A47C48*G12G13C14ncWWcWWcWW
62 IL_5UNE_0065UNE0.42850Isolated non-canonical cWWB+ARNA (47-MER)U16A17G18*C27A28G29cWWcWwcWW
63 IL_4M4O_0014M4O0.28620Isolated non-canonical cWWBRNA (59-MER)A52C53G54*C6A7U8cWWcWWacWW
64 IL_7A0S_0207A0S0.22740Isolated non-canonical cWWX LSU rRNAG767U768C769*G754C755C756cWWcWWcWW
65 IL_5TBW_0215TBW0.25050Isolated non-canonical cWW1 LSU rRNAG792C793U794*G668U669C670cWWcWWcWW
66 IL_8C3A_0238C3A0.23370Isolated non-canonical cWW1 LSU rRNAG788C789U790*G666U667C668cWWcWWcWW
67 IL_8C3A_0498C3A0.25250Isolated non-canonical cWW1 LSU rRNAA1116U1117U1118*A1132C1133U1134cWWcWWcWW
68 IL_5TBW_0465TBW0.30610Isolated non-canonical cWW1 LSU rRNAA1120U1121U1122*A1136C1137U1138cWWcWWcWW
69 IL_4LFB_0104LFB0.25650Isolated non-canonical cWWA SSU rRNAC186C187C188*G190|||KU190|||LG191cWWcWWcWW
70 IL_4LFB_0634LFB0.28780Isolated non-canonical cWWA SSU rRNAG1464C1465C1466*G1435U1436C1437cWWcWWcWW
71 IL_6CZR_1716CZR0.35310Isolated non-canonical cWW1a SSU rRNAG1442C1443C1444*G1418U1419C1420cWWncWWcWW
72 IL_7ECP_0017ECP0.22110Isolated non-canonical cWWB+ARNA (12-mer)G8U9C10*G3C4C5cWWcWWcWW
73 IL_7ECP_0027ECP0.28540Isolated non-canonical cWWB+ARNA (12-mer)G3C4C5*G8U9C10cWWcWWcWW
74 IL_3RW6_0043RW60.30250Isolated non-canonical cWWHconstitutive transport element(CTE)of Mason-Pfizer monkey virus RNAC33U34G35*C24C25G26cWWcWWcWW
75 IL_4V9F_0174V9F0.23840Isolated non-canonical cWW0 LSU rRNAC558U559U560*A597C598G599cWWcWWcWW
76 IL_4WF9_0834WF90.19220Isolated non-canonical cWWX LSU rRNAC2111C2112U2113*A2260A2261G2262cWWncWWacWW
77 IL_4WF9_0204WF90.21290Isolated non-canonical cWWX LSU rRNAC851U852G853*C717C718G719cWWcWWcWW
78 IL_8VTW_0168VTW0.22890Isolated non-canonical cWW1A LSU rRNAC806U807G808*C672C673G674cWWcWWcWW
79 IL_5J7L_2595J7L0.23030Isolated non-canonical cWWDA LSU rRNAC806U807G808*C672C673G674cWWcWWcWW
80 IL_7A0S_0147A0S0.21070Isolated non-canonical cWWX LSU rRNAC819U820A821*U685C686G687cWWcWWcWW
81 IL_5TBW_0275TBW0.24070Isolated non-canonical cWW1 LSU rRNAC938U939G940*C803C804G805cWWcWWcWW
82 IL_8C3A_0298C3A0.24610Isolated non-canonical cWW1 LSU rRNAC934U935G936*C799C800G801cWWncWWcWW
83 IL_5TBW_1035TBW0.27540Isolated non-canonical cWW1 LSU rRNAG2824C2825U2826*G2863A2864U2865cWWcWWacWW
84 IL_5TBW_0445TBW0.31310Isolated non-canonical cWW1 LSU rRNAG1087U1088G1089*C1069U1070U1071cWWncWwcWW
85 IL_8C3A_0478C3A0.24930Isolated non-canonical cWW1 LSU rRNAG1083U1084G1085*C1065U1066U1067cWWncWwcWW
86 IL_4V88_4654V880.26800Isolated non-canonical cWWA6 SSU rRNAG1642U1643C1644*G1757U1758C1759cWWcWW
87 IL_5J7L_3635J7L0.23480Isolated non-canonical cWWAA SSU rRNAG1405U14065MC1407*G1494U1495C1496cWWcWW
88 IL_8C3A_4728C3A0.22690Isolated non-canonical cWWCM SSU rRNAG1629U1630C1631*G1744U1745C1746cWWcWW
89 IL_8C3A_0088C3A0.26780Isolated non-canonical cWW1 LSU rRNAC124U125G126*C140C141G142cWWcWWcWW
90 IL_5TBW_0085TBW0.29630Isolated non-canonical cWW1 LSU rRNAC125U126G127*C141C142G143cWWcWWcWW
91 IL_4V9F_0234V9F0.25380Isolated non-canonical cWW0 LSU rRNAC899U900G901*C763C764G765cWWcWWcWW
92 IL_4V88_4444V880.27420Isolated non-canonical cWWA6 SSU rRNAG1464C1465G1466*C1173C1174U1175cWWncBWcWW
93 IL_8C3A_4508C3A0.31610Isolated non-canonical cWWCM SSU rRNAG1450C1451G1452*C1158C1159U1160cWWncBWcWW
94 IL_7MLW_0067MLW0.31530Isolated non-canonical cWWFGuanidine-I riboswitchC71U72U73*A92C93G94cWWcWW
95 IL_5D0B_0015D0B0.23840Isolated non-canonical cWWFRNA (17-mer)A37A38U39*A31C32U33cWWcWWcWW
96 IL_6CZR_1226CZR0.36060Isolated non-canonical cWW1a SSU rRNAG196U197G198*C181C182C183cWWcWWncWW
97 IL_4V83_2354V830.32160Isolated non-canonical cWWCVdomain 3 of PSIC IGR IRES RNAG6173U6174G6175*C6153U6154C6155cWWncwWcWW
98 IL_4ZC7_0014ZC70.21820Isolated non-canonical cWWA+BRNA duplexG5U6C7*G42U43C44cWWncwWcWW
99 IL_3TD0_0013TD00.22780Isolated non-canonical cWWA+BRNA (23-mer)G5U6C7*G42U43C44cWWncWwcWW
100 IL_4ZC7_0044ZC70.23300Isolated non-canonical cWWB+ARNA duplexG28U29C30*G19U20C21cWWncwWcWW
101 IL_4V88_3854V880.26280Isolated non-canonical cWWA6 SSU rRNAA471U472A473*U35C36U37cWWcWWcWW
102 IL_8C3A_3938C3A0.20420Isolated non-canonical cWWCM SSU rRNAA469U470A471*U35C36U37cWWcWWcWW
103 IL_1ZZ5_0041ZZ50.23910Isolated non-canonical cWWC+DRNA (15-mer) + RNA (14-mer)G10U11C12*G24U25C26cWWncWwcWW
104 IL_1ZZ5_0021ZZ50.26020Isolated non-canonical cWWA+BRNA (15-mer) + RNA (14-mer)G10U11C12*G24U25C26cWWncWwcWW
105 IL_4PDQ_0014PDQ0.27940Isolated non-canonical cWWA+BRNA (23-mer)G5U6C7*G42U43C44cWWcWW
106 IL_4LFB_0694LFB0.25030Isolated non-canonical cWWA SSU rRNAG1405U14065MC1407*G1494U1495C1496cWWncWwcWW
107 IL_5Z1I_0015Z1I0.27040Isolated non-canonical cWWARNA (21-mer)G5U6C7*G19||||8_555U20||||8_555C21||||8_555cWWcWwcWW
108 IL_5Z1I_0045Z1I0.27040Isolated non-canonical cWWARNA (21-mer)G5||||8_555U6||||8_555C7||||8_555*G19U20C21cWWcWwcWW
109 IL_4P43_0044P430.20110Isolated non-canonical cWWB+ARNA (23-mer)G28U29C30*G19U20C21cWWcWwcWW
110 IL_6IA2_0026IA20.12520Isolated non-canonical cWWB+ARNA (19-mer)G11||AA12G13*C7C8C9cWWcWWcWW
111 IL_6IA2_0056IA20.10990Isolated non-canonical cWWB+ARNA (19-mer)G2A3G4*C16C17C18cWWcWWcWW
112 IL_8C3A_1308C3A0.10710Isolated non-canonical cWW1 LSU rRNAC3134A3135C3136*G3249C3250G3251cWWncWWcWW
113 IL_1Z7F_0051Z7F0.15770Isolated non-canonical cWWC+BRNA (16-mer)A26A27U28*A5C6U7cWWcWWcWW
114 IL_7KFN_0017KFN0.17820Isolated non-canonical cWWB+CGli1 8AZ 23mer RNA + Gli1 1W5 23mer RNAG14A15G16*C8C9C10cWWcWWcWW
115 IL_5ED2_0045ED20.17860Isolated non-canonical cWWE+FRNA (23-mer)G14A15G16*C8C9C10cWWcWWcWW
116 IL_8C3A_4528C3A0.19510Isolated non-canonical cWWCM SSU rRNAG1198U1199C1200*G1434U1435U1436ncWWncWwcWW
117 IL_3SZX_0033SZX0.13590Isolated non-canonical cWWB+ARNA (19-mer)C7U8G9*C13U14G15cWWncWwcWW
118 IL_4E48_0054E480.14300Isolated non-canonical cWWB+ARNA (20-mer)C25U26G27*C14U15G16cWWcWW
119 IL_5MWI_0035MWI0.14270Isolated non-canonical cWWARNA G(CUG)8C duplexC8U9G10*C17||||4_555U18||||4_555G19||||4_555cWWcWW
120 IL_5MWI_0065MWI0.14270Isolated non-canonical cWWARNA G(CUG)8C duplexC8||||4_555U9||||4_555G10||||4_555*C17U18G19cWWcWW
121 IL_3GM7_0013GM70.13880Isolated non-canonical cWWG+HRNA (18-mer)C1U2G3*C16U17G18cWWcWW
122 IL_2ZKO_0012ZKO0.14870Isolated non-canonical cWWC+DRNA (21-mer)U9U10A11*U9U10A11cWWcWW
123 IL_4V88_4464V880.16630Isolated non-canonical cWWA6 SSU rRNAG1213U1214C1215*G1448U1449U1450cWWncWwcWW
124 IL_4JGN_0024JGN0.11860Isolated non-canonical cWWERNA (20-mer)C514||||4_555U515||||4_555G516||||4_555*C508U509G510cWWncWwcWW
125 IL_4JGN_0044JGN0.11860Isolated non-canonical cWWERNA (20-mer)C514U515G516*C508||||4_555U509||||4_555G510||||4_555cWWncWwcWW
126 IL_4E48_0064E480.19170Isolated non-canonical cWWA+BRNA (20-mer)C17U18G19*C22U23G24cWWncWwcWW
127 IL_4KNQ_0024KNQ0.18260Isolated non-canonical cWWBRNA (20-mer)C213||||4_555C214||||4_555G215||||4_555*C207C208G209cWWcWW
128 IL_4KNQ_0044KNQ0.18260Isolated non-canonical cWWBRNA (20-mer)C213C214G215*C207||||4_555C208||||4_555G209||||4_555cWWcWW
129 IL_7OFZ_0017OFZ0.13740Isolated non-canonical cWWCRNA (19-mer)C9||||7_555C10||||7_555G11||||7_555*C9C10G11cWWcWW
130 IL_7ZLQ_0017ZLQ0.13590Isolated non-canonical cWWCRNA (13-mer)G5C6C7*G5||||8_555C6||||8_555C7||||8_555cWWcWW
131 IL_7OFW_0017OFW0.15460Isolated non-canonical cWWCRNA (18-mer)C9C10G11*C9||||7_555C10||||7_555G11||||7_555cWWcWW
132 IL_3SZX_0023SZX0.14600Isolated non-canonical cWWA+BRNA (19-mer)C10U11G12*C10U11G12cWWncWwcWW
133 IL_4NGF_0024NGF0.15380Isolated non-canonical cWWH+GRNA (17-mer)G7U8C9*G7U8C9cWWncWwcWW
134 IL_3GM7_0033GM70.16330Isolated non-canonical cWWG+HRNA (18-mer)C7U8G9*C10U11G12cWWncWwcWW
135 IL_3GM7_0063GM70.12320Isolated non-canonical cWWH+GRNA (18-mer)C1U2G3*C16U17G18cWWncWwcWW
136 IL_3SZX_0013SZX0.16530Isolated non-canonical cWWB+ARNA (19-mer)C13U14G15*C7U8G9cWWcWW
137 IL_4E48_0034E480.13880Isolated non-canonical cWWB+ARNA (20-mer)C31U32G33*C8U9G10cWWcWW
138 IL_5VCI_0025VCI0.13050Isolated non-canonical cWWA+BRNA (22-mer) + RNA (12-mer)C4U5G6*C7U8G9cWWncWwcWW
139 IL_5MWI_0075MWI0.14820Isolated non-canonical cWWARNA G(CUG)8C duplexC5||||4_555U6||||4_555G7||||4_555*C20U21G22cWWcWW
140 IL_5MWI_0025MWI0.14820Isolated non-canonical cWWARNA G(CUG)8C duplexC5U6G7*C20||||4_555U21||||4_555G22||||4_555cWWcWW
141 IL_1UN6_0051UN60.19710Isolated non-canonical cWWF5S RIBOSOMAL RNAC95U96G97*C79U80G81cWWncWwcWW
142 IL_4E48_0024E480.16290Isolated non-canonical cWWA+BRNA (20-mer)C5U6G7*C34U35G36cWWcWW
143 IL_4E48_0014E480.18690Isolated non-canonical cWWB+ARNA (20-mer)C37U38G39*C2U3G4cWWcWW
144 IL_4E48_0044E480.18230Isolated non-canonical cWWA+BRNA (20-mer)C11U12G13*C28U29G30cWWncWwcWW
145 IL_5MWI_0045MWI0.16290Isolated non-canonical cWWARNA G(CUG)8C duplexC11U12||AG13*C14||||4_555U15||A||4_555G16||||4_555cWWcWW
146 IL_5MWI_0055MWI0.16290Isolated non-canonical cWWARNA G(CUG)8C duplexC11||||4_555U12||A||4_555G13||||4_555*C14U15||AG16cWWcWW
147 IL_3GM7_0053GM70.15950Isolated non-canonical cWWH+GRNA (18-mer)C4U5G6*C13U14G15cWWcWW
148 IL_3GM7_0043GM70.19340Isolated non-canonical cWWH+GRNA (18-mer)C7U8G9*C10U11G12cWWncWwcWW
149 IL_3GM7_0023GM70.14210Isolated non-canonical cWWH+GRNA (18-mer)C13U14G15*C4U5G6cWWcWW
150 IL_4E59_0014E590.13470Isolated non-canonical cWWA+BRNA duplex containing CCG repeatsC2C3G4*C2C3G4cWWncBWcWW
151 IL_1KFO_0061KFO0.13630Isolated non-canonical cWWARNA (19-mer)G1||||8_555A2||||8_555A3||||8_555*5BU16C17C18cWWcWWcWW
152 IL_1KFO_0051KFO0.13630Isolated non-canonical cWWARNA (19-mer)G1A2A3*5BU16||||8_555C17||||8_555C18||||8_555cWWcWWcWW
153 IL_3MEI_0023MEI0.12390Isolated non-canonical cWWA+BRNA (23-mer)G8C9C10*G13C14C15cWWncBWcWW
154 IL_5CCB_0015CCB0.12540Isolated non-canonical cWWN tRNAA37A38U39*A31C32U33cWWcWWcWW
155 IL_4V88_4174V880.09250Isolated non-canonical cWWA6 SSU rRNAA973A974C975*G624C625U626cWWcWWcWW
156 IL_8C3A_4278C3A0.09490Isolated non-canonical cWWCM SSU rRNAA958A959C960*G622C623U624cWWcWWcWW
157 IL_6OL3_0026OL30.00000Isolated non-canonical cWWC VA RNAG53A54C55*G78C79C80cWWcWWcWW
158 IL_8C3A_0858C3A0.08250Isolated non-canonical cWW1 LSU rRNAA2084A2085C2086*G1936C1937U1938cWWcWWcWW
159 IL_4P3T_0054P3T0.14001Isolated non-canonical cWWA+BRNA (23-mer)G16A18G19*C30C31C32cWWcWWcWW
160 IL_1YZ9_0011YZ90.12300Isolated non-canonical cWWD+CRNA (11-mer)A15C16U17*A4C5U6cWWncBWcWW
161 IL_1YZ9_0021YZ90.11820Isolated non-canonical cWWE+FRNA (11-mer)A4C5U6*A15C16U17cWWncBWcWW
162 IL_6IA2_0046IA20.12200Isolated non-canonical cWWA+BRNA (19-mer)G11A12G13*C7C8C9cWWcWWcWW
163 IL_1Z7F_0021Z7F0.09290Isolated non-canonical cWWARNA (16-mer)A10A11U12*A5||||6_765C6||||6_765U7||||6_765cWWcWWcWW
164 IL_1Z7F_0011Z7F0.09290Isolated non-canonical cWWARNA (16-mer)A10||||6_765A11||||6_765U12||||6_765*A5C6U7cWWcWWcWW
165 IL_5AOX_0015AOX0.17280Isolated non-canonical cWWCALU JO CONSENSUS RNAC18A19C20*G9C10G11cWWcWWcWW
166 IL_1U9S_0071U9S0.14420Isolated non-canonical cWWARIBONUCLEASE PC191A192C193*G177C178G179cWWcWWcWW
167 IL_5Y85_0065Y850.11220Isolated non-canonical cWWC+DRNA (18-mer) + DNA/RNA (50-MER)G13A14C15*G4C5C6cWWcWWcWW
168 IL_7ECO_0067ECO0.17740Isolated non-canonical cWWF+ERNA (12-mer)G3U4C5*G8U9C10cWWcWW
169 IL_5AY2_0035AY20.17500Isolated non-canonical cWWB+ARNA (12-mer)A3C4U5*A8C9U10cWWcWW
170 IL_5AY2_0015AY20.18740Isolated non-canonical cWWA+BRNA (12-mer)A3C4U5*A8C9U10cWWcWW
171 IL_1ZH5_0011ZH50.17490Isolated non-canonical cWWD+CRNA (9-mer)C3U4G5*C3U4G5cWWncWwcWW
172 IL_4J39_0014J390.19600CC cWWBRNA (19-mer)G9||||4_555C10||||4_555C11||||4_555*G9C10C11cWWcWW
173 IL_4JGN_0034JGN0.17930Isolated near basepairERNA (20-mer)C511U512G513*C511||||4_555U512||||4_555G513||||4_555cWWncwWcWW
174 IL_4KNQ_0034KNQ0.18960Isolated non-canonical cWWBRNA (20-mer)C210C211G212*C210||||4_555C211||||4_555G212||||4_555cWWcWW
175 IL_7ECO_0057ECO0.18310Isolated non-canonical cWWE+FRNA (12-mer)G3U4C5*G8U9C10cWWcWW
176 IL_6SX2_0016SX20.25890Isolated non-canonical cWWC+DRNA (19-mer)U9U10A11*U9U10A11cWWncWwcWW
177 IL_4V88_3984V880.32260Isolated non-canonical cWWA6 SSU rRNAA257C258U259*A206U207U208cWWcWWcWW
178 IL_8C3A_4068C3A0.27390Isolated non-canonical cWWCM SSU rRNAA204U205U206*A255C256U257cWWcWWcWW
179 IL_2O3V_0012O3V0.23260Isolated non-canonical cWWB+ARNA (23-mer)G42U43C44*G5U6C7cWWcWwcWW
180 IL_7XPL_0017XPL0.20060Isolated non-canonical cWWG+HBMG3 RNA strand A + BMG3 RNA strand BC22U23U24*A6U7G8cWWcWwcWW
181 IL_4P3T_0014P3T0.18300Isolated non-canonical cWWB+ARNA (23-mer)G42U43C44*G5U6C7cWWncWwcWW
182 IL_4JGN_0054JGN0.17770Isolated non-canonical cWWERNA (20-mer)C505||||4_555U506||||4_555G507||||4_555*C517U518G519cWWcWwcWW
183 IL_4JGN_0014JGN0.17770Isolated non-canonical cWWERNA (20-mer)C505U506G507*C517||||4_555U518||||4_555G519||||4_555cWWcWwcWW
184 IL_3U4M_0013U4M0.20800Isolated non-canonical cWWB LSU rRNAC2179U2180U2181*A2108U2109G2110cWWcWwcWW
185 IL_5ZTM_0025ZTM0.18590Isolated non-canonical cWWCnon-coding mRNA sequence roX2G157U158U159*A123U124C125cWWcWwcWW
186 IL_2O3Y_0012O3Y0.18680Isolated non-canonical cWWB+ARNA (23-mer)G42U43C44*G5U6C7cWWcWwcWW
187 IL_3TD0_0063TD00.16660Isolated non-canonical cWWA+BRNA (23-mer)G19U20C21*G28U29C30cWWcWwcWW
188 IL_2OE5_0012OE50.15780Isolated non-canonical cWWA+BRNA (16-mer) + RNA (17-mer)G1405U1406C1407*G1494U1495C1496cWWcWwcWW
189 IL_2OE8_0012OE80.15600Isolated non-canonical cWWA+BRNA (16-mer) + RNA (17-mer)G1405U1406C1407*G1494U1495C1496cWWcWwcWW
190 IL_4P3T_0064P3T0.14970Isolated non-canonical cWWB+ARNA (23-mer)G28U29C30*G19U20C21cWWcWwcWW
191 IL_4KYY_0034KYY0.17270Isolated non-canonical cWWB+ARNA 17-merG5U6U7*A11U12C13cWWcWwcWW
192 IL_4K31_0044K310.18050Isolated non-canonical cWWB+CRNA (23-mer)G19U20C21*G5U6C7cWWcWwcWW
193 IL_4K31_0014K310.18770Isolated non-canonical cWWC+BRNA (23-mer)G19U20C21*G5U6C7cWWcWwcWW
194 IL_4KYY_0014KYY0.16410Isolated non-canonical cWWA+BRNA 17-merG5U6U7*A11U12C13cWWcWwcWW
195 IL_4U35_0014U350.17640Isolated non-canonical cWWB+ARNA (7-mer)G9U10G11*C4SUR5C6cWWcWwcWW
196 IL_3BNN_0053BNN0.22240Isolated non-canonical cWWD+CA site of human ribosomeG17U18C19*G3U4C5cWWcWwcWW
197 IL_3BNR_0123BNR0.20700Isolated non-canonical cWWD+CA site of human mitochondrial ribosome, chain threeG3U4C5*G19U20C21cWWcWwcWW
198 IL_3BNN_0083BNN0.21450Isolated non-canonical cWWD+CA site of human ribosomeG3U4C5*G17U18C19cWWcWwcWW
199 IL_2O3Y_0042O3Y0.18420Isolated non-canonical cWWA+BRNA (23-mer)G19U20C21*G28U29C30cWWcWwcWW
200 IL_5B2P_0015B2P0.22550Isolated non-canonical cWWBGuide RNAG48U49A50*U24U25C26cWWcWwcWW
201 IL_4P3U_0064P3U0.21390Isolated non-canonical cWWA+BRNA (23-mer)G19U20C21*G28U29C30cWWcWwcWW
202 IL_4P3U_0074P3U0.18760Isolated non-canonical cWWC+DRNA (23-mer)G5U6C7*G42U43C44cWWncWwcWW
203 IL_4P43_0014P430.20740Isolated non-canonical cWWB+ARNA (23-mer)G42U43C44*G5U6C7cWWcWwcWW
204 IL_5WTI_0025WTI0.25860Isolated non-canonical cWWBRNA (123-MER)G18U19C20*G10U11C12cWWcWwcWW
205 IL_4TS2_0044TS20.27010Isolated non-canonical cWWX+YSpinach aptamer RNA, bimolecular constructG20U21G22*C77U78C79cWWcWwcWW
206 IL_8C3A_0378C3A0.24420Isolated non-canonical cWW1 LSU rRNAU950U951U952*A961U962A963cWWcWwcWW
207 IL_5TBW_0345TBW0.25800Isolated non-canonical cWW1 LSU rRNAU954U955U956*A965U966A967cWWcWwcWW
208 IL_1MFQ_0021MFQ0.22660Isolated non-canonical cWWA SRP RNAG120U121U122*A228U229C230cWWcWwcWW
209 IL_8C3A_1248C3A0.26480Isolated non-canonical cWW1 LSU rRNAA3012U3013U3014*A2984U2985U2986cWWcWwcWW
210 IL_5TBW_1155TBW0.24270Isolated non-canonical cWW1 LSU rRNAA3040U3041U3042*A3012U3013U3014cWWcWwcWW
211 IL_1U6B_0051U6B0.27900Isolated non-canonical cWWB197-MERC100U101U102*A117U118G119cWWcWwcWW
212 IL_2O3V_0042O3V0.26450Isolated non-canonical cWWA+BRNA (23-mer)G19U20C21*G28U29C30cWWcWwcWW
213 IL_3BNT_0013BNT0.29630Isolated non-canonical cWWAA site of human mitochondrial ribosomeG18||||4_665U19||||4_665C20||||4_665*G4U5C6cWWcWwcWW
214 IL_3BNT_0063BNT0.29630Isolated non-canonical cWWAA site of human mitochondrial ribosomeG18U19C20*G4||||4_665U5||||4_665C6||||4_665cWWcWwcWW
215 IL_7L0Z_0017L0Z0.26540Isolated non-canonical cWWGRNA (69-MER)C58U59C60*G10U11G12cWWcWwcWW
216 IL_3BNR_0073BNR0.23480Isolated non-canonical cWWD+CA site of human mitochondrial ribosome, chain threeG17U18C19*G5U6C7cWWcWwcWW
217 IL_2ET8_0042ET80.26790Isolated non-canonical cWWA+BRNA (22-mer)G18U19C20*G27U28C29cWWcWwcWW
218 IL_5TBW_1225TBW0.27790Isolated non-canonical cWW1 LSU rRNAU3280U3281U3282*A3168U3169A3170cWWcWwcWW
219 IL_4KNQ_0054KNQ0.25210Isolated non-canonical cWWBRNA (20-mer)C204||||4_555C205||||4_555G206||||4_555*C216C217G218cWWcwWcWW
220 IL_4KNQ_0014KNQ0.25210Isolated non-canonical cWWBRNA (20-mer)C204C205G206*C216||||4_555C217||||4_555G218||||4_555cWWcwWcWW
221 IL_1T0E_0021T0E0.22940Isolated non-canonical cWWC+ARNA (17-mer)G14U15C16*G10||AU11C12cWWcWwcWW
222 IL_1ZX7_0041ZX70.22640Isolated non-canonical cWWD+CRNA (14-mer)G24U25C26*G10U11C12cWWcWwcWW
223 IL_1ZX7_0061ZX70.27210Isolated non-canonical cWWF+ERNA (14-mer)G24U25C26*G10U11C12cWWcWwcWW
224 IL_8FEQ_0018FEQ0.21710Isolated non-canonical cWWAAARNA 16mer with two separated s(2)UU11||||4_555SUR12||||4_555C13||||4_555*G4SUR5A6cWWcWwcWW
225 IL_8FEQ_0028FEQ0.21710Isolated non-canonical cWWAAARNA 16mer with two separated s(2)UU11SUR12C13*G4||||4_555SUR5||||4_555A6||||4_555cWWcWwcWW
226 IL_4P3U_0124P3U0.20480Isolated non-canonical cWWD+CRNA (23-mer)G28U29C30*G19U20C21cWWncWwcWW
227 IL_7Y2B_0037Y2B0.21020Isolated non-canonical cWWSRNA (13-mer)C3||||5_555U4||||5_555G5||||5_555*C9U10G11cWWcWW
228 IL_7Y2B_0017Y2B0.21020Isolated non-canonical cWWSRNA (13-mer)C3U4G5*C9||||5_555U10||||5_555G11||||5_555cWWcWW
229 IL_1RPU_0011RPU0.20580Isolated non-canonical cWWD+CRNA (21-mer)U9||AC10||AA11||A*U9||AC10||AA11||AcWWncBWcWW
230 IL_5TBW_1125TBW0.20220Isolated non-canonical cWW1 LSU rRNAG2918A2919U2920*A2926C2927C2928cWWcWWcWW
231 IL_8C3A_1208C3A0.22670Isolated non-canonical cWW1 LSU rRNAG2890A2891U2892*A2898C2899C2900cWWcWWcWW
232 IL_7A0S_0117A0S0.30660Isolated non-canonical cWWX LSU rRNAA584U585G586*C573C574U575cWWcWWcWW
233 IL_8VTW_0148VTW0.27530Isolated non-canonical cWW1A LSU rRNAA575U576G577*C564C565U566cWWcWWcWW
234 IL_4WF9_0174WF90.28070Isolated non-canonical cWWX LSU rRNAA618U619G620*C607C608U609cWWcWWcWW
235 IL_5J7L_2575J7L0.31630Isolated non-canonical cWWDA LSU rRNAA575U576G577*C564C565U566cWWcWWcWW
236 IL_4V9F_0474V9F0.22950Isolated non-canonical cWW0 LSU rRNAC1303U1304C1305*G1349U1350G1351cWWcWwcWW
237 IL_3LOA_0023LOA0.25310Isolated non-canonical cWWA+BRNA (21-mer) + RNA (23-mer)G14055BU1406C1407*G1494U1495C1496cWWcWwcWW
238 IL_6E7L_0036E7L0.23040Isolated non-canonical cWWARNA (22-mer)C17U18G19*C4||||7_375U5||||7_375G6||||7_375ncWWcWWcWwcWW
239 IL_6E7L_0016E7L0.23040Isolated non-canonical cWWARNA (22-mer)C17||||7_375U18||||7_375G19||||7_375*C4U5G6ncWWcWWcWwcWW
240 IL_5MWI_0085MWI0.25110Isolated non-canonical cWWARNA G(CUG)8C duplexC2||||4_555U3||||4_555G4||||4_555*C23U24G25cWWcWwcWW
241 IL_5MWI_0015MWI0.25110Isolated non-canonical cWWARNA G(CUG)8C duplexC2U3G4*C23||||4_555U24||||4_555G25||||4_555cWWcWwcWW
242 IL_6CZR_1576CZR0.26750Isolated non-canonical cWW1a SSU rRNAG1175U1176C1177*G1044U1045C1046cWWncWwcWW
243 IL_4LFB_0474LFB0.24610Isolated non-canonical cWWA SSU rRNAG1193U1194C1195*G1061U1062C1063cWWcWwcWW
244 IL_5J7L_0505J7L0.28030Isolated non-canonical cWWAA SSU rRNAG1193U1194C1195*G1061U1062C1063cWWcWwcWW
245 IL_5VCI_0015VCI0.32240Isolated non-canonical cWWA+BRNA (22-mer) + RNA (12-mer)C1U2G3*C10U11G12cWWcWwcWW
246 IL_4PCJ_0014PCJ0.31530Isolated non-canonical cWWAtrCUG-3('5)C1U2G3*C33U34G35cWWcWwcWW
247 IL_4KZD_0034KZD0.26990Isolated non-canonical cWWRRNA (84-MER)C66U67C68*G17U18G19cWWcWwcWW
248 IL_7MDL_0017MDL0.33690Isolated non-canonical cWWERNA (90-MER)C66||AU67||AU67||A|A*A5||A|BU6||AG7||AcWWcWwcWW
249 IL_8G9Z_0018G9Z0.35270Isolated non-canonical cWWESelenocysteine transfer RNAC66||AU67||AU67||A|A*A5||A|BU6||AG7||AcWWcWwcWW
250 IL_1MZP_0011MZP0.29850Isolated non-canonical cWWBfragment of 23S rRNAC50U51U52*A4U5G6cWWcWwcWW
251 IL_3RG5_0023RG50.27850Isolated non-canonical cWWBSelenocysteine transfer RNAC66U67U67|||A*A5|||BU6G7cWWcWwcWW
252 IL_7A0S_0787A0S0.28250Isolated non-canonical cWWX LSU rRNAU2211U2212G2213*C2068U2069G2070cWWcWwcWW
253 IL_8VTW_0828VTW0.29840Isolated non-canonical cWW1A LSU rRNAU2232U2233G2234*C2085U2086G2087cWWcWwcWW
254 IL_5J7L_3265J7L0.26950Isolated non-canonical cWWDA LSU rRNAU2085U2086G2087*C2232U2233G2234cWWcWwcWW
255 IL_8C3A_4318C3A0.30130Isolated non-canonical cWWCM SSU rRNAU733U734U735*A783U784G785cWWcWwcWW
256 IL_4V88_4244V880.30710Isolated non-canonical cWWA6 SSU rRNAU748U749U750*A799U800G801cWWcWwcWW
257 IL_4PCJ_0024PCJ0.32300Isolated non-canonical cWWAtrCUG-3('5)C30U31G32*C4PSU5G6cWWcWW
258 IL_4V88_4334V880.30660Isolated non-canonical cWWA6 SSU rRNAU917U918A919*U893U894G895ncWWcWwcWW
259 IL_5J7L_2735J7L0.34530Isolated non-canonical cWWDA LSU rRNAA905U906G907*U870U871U872cWWcWwcWW
260 IL_4V88_4264V880.41851Isolated non-canonical cWWA6 SSU rRNAG819U821U822*A850U851C852cWWcWwcWW
261 IL_4V88_4574V880.62412Isolated non-canonical cWWA6 SSU rRNAU1369U1372C1373*G1352U1353G1354cWWcWwcWW
262 IL_5B2P_0025B2P0.59311Isolated non-canonical cWWBGuide RNAG28U30G31*C44U45C46cWWcWwcWW
263 IL_8C3A_0648C3A0.57491Isolated non-canonical cWW1 LSU rRNAU1394U1396G1397*C1406U1407G1408cWWcWwcWW

3D structures

Complete motif including flanking bases
SequenceCounts
GUC*GUC43
CUG*CUG37
CUG*CCG9
AAU*ACU8
CCG*CCG8
GAG*CCC7
CUU*AUG7
CAG*CAG6
GAC*GGC5
GCC*GCC4
GAC*GCC4
ACU*ACU4
GUU*AUC4
AUG*CCU4
GAC*GAC3
CAU*GGG3
GGG*CAC3
AUU*ACU3
GCC*GUC3
CAC*GCG3
AAC*GCU3
UUU*AUA3
CUC*GUG3
UUG*CUG3
CAU*GCG2
ACG*CCU2
UCC*GAG2
UCA*UCA2
AAG*CAU2
UAC*GAA2
UAG*CAG2
CGG*CAG2
UAU*AGA2
CAU*AGUG2
GGC*GGC2
AAC*GGU2
GUC*GCC2
GCU*GUC2
CUU*ACG2
GUG*CUU2
GU(5MC)*GUC2
GCG*CCU2
GUG*CUC2
AUA*UCU2
GUC*GUU2
UUA*UUA2
GAA*(5BU)CC2
AUU*AUU2
U(SUR)C*G(SUR)A2
GAU*ACC2
UUU*AUG2
CGU*GAG1
UCG*CAA1
CCU*ACG1
CAA*UCG1
CGG*CGG1
UGG*CAA1
CGA*UGG1
GAC*GCAGC1
GAU*AGC1
CAC*GGAG1
CAC*GGG1
ACG*CAU1
CCC*GUG1
CCU*AAG1
CUA*UCG1
GCU*GAU1
GUG*CCC1
GAAG*CCC1
ACU*AUU1
GUG*C(SUR)C1
GUA*UUC1
GC*GUC1
CUG*C(PSU)G1
UUA*UUG1
AUG*UUU1
GUUU*AUC1
UUAUC*GUG1
GUUG*CUC1
UUUG*CUG1
Non-Watson-Crick part of the motif
SequenceCounts
U*U117
A*C32
U*C24
C*C23
A*A15
A*G14
G*A7
C*U7
C*A6
G*G4
UU*U3
A*GU2
(SUR)*(SUR)2
A*CAG1
A*GA1
AA*C1
U*(SUR)1
(5BU)*U1
U*(PSU)1
UAU*U1

Release history

Release3.88
Date2024-09-11
StatusNew id, > 2 parents

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Isolated non-canonical cWW (257)
  • Isolated near basepair (5)
  • CC cWW (1)
  • Basepair signature
    cWW-cWW-cWW
    Heat map statistics
    Min 0.00 | Avg 0.33 | Max 0.94
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