#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3break 4 5 61-62-53-4
1 IL_1S72_0621S720.87394Intercalated tWH (H)0 LSU rRNAC2031U2032U2034*A1747U1748G1752cWWcWW
2 IL_2QBG_0652QBG0.86014B23S rRNAC1990U1991U1993*A1669C1670G1674cWWcWW
3 IL_1VW3_0491VW30.88154A21S ribosomal RNAC1890U1891U1893*A1621C1622G1626cWWcWW
4 IL_4QCN_0634QCN0.89084A23S Ribosomal RNAC2012U2013U2015*A1716C1717G1721cWWcWW
5 IL_2QEK_0022QEK0.81181A+BHIV-1 subtype F DIS genomic RNAC15A16C17*G7A9G10cWWcWW
6 IL_4KYY_0024KYY0.77710Isolated non-canonical cWW pairA+BRNA 17-merU8U9G10*U8U9G10cWWcWW
7 IL_3J7A_0193J7A0.32500Isolated cWH basepair (H)A SSU rRNAU412A413C414*G395G396A397cWWcWHcWW
8 IL_4BPP_0204BPP0.29970A18S RRNAU397A398C399*G380G381A382cWWcWHcWW
9 IL_3U5F_0223U5F0.33310618S rRNAU406A407C408*G389G390A391cWWcWHcWW
10 IL_420D_001420D0.29170B+ARNA (16-mer)A26A27U28*A5G6U7cWWcWHcWW
11 IL_420D_002420D0.30630A+BRNA (16-mer)A10A11U12*A21G22U23cWWcWHcWW
12 IL_4KTG_0034KTG0.30090B+ERNA (19-mer)G209G210C211*G209G210C211cWWcWHcWW
13 IL_3W3S_0033W3S0.26800Isolated cWH basepairBSelenocysteine transfer RNAA47|||NG47|||OC47|||P*G47|||AG47|||BU47|||CcWWcWHcWW
14 IL_4KTG_0044KTG0.35120E+BRNA (19-mer)G206G207C208*G212G213C214cWWcWHcWW
15 IL_4KTG_0024KTG0.35340B+ERNA (19-mer)G206G207C208*G212G213C214cWWcWHcWW
16 IL_4KTG_0014KTG0.24870E+BRNA (19-mer)G215G216C217*G203G204C205cWWcWHcWW
17 IL_4KTG_0054KTG0.24790B+ERNA (19-mer)G215G216C217*G203G204C205cWWcWHcWW
18 IL_1VX6_1451VX60.26051B5S ribosomal RNAG82G83G85*C92G93C94cWWcWHcWW
19 IL_2AW7_0112AW70.22170A16S ribosomal RNAG144G145G146*C176G177C178cWWcWHcWW
20 IL_3U5F_0703U5F0.24190618S rRNAC1323G1324A1325*U1290G1291G1292cWWcWHcWW
21 IL_3U5F_0443U5F0.26020618S rRNAC848C849A850*U822G823G824cWWncWHcWW
22 IL_4KQ0_0044KQ00.12940Isolated cWH basepairB+ERNA (19-mer)C12G13G14*C6G7G8cWWcWHcWW
23 IL_4KQ0_0024KQ00.12920Isolated cWH basepairE+BRNA (19-mer)C12G13G14*C6G7G8cWWcWHcWW
24 IL_4BPP_0124BPP0.10150A18S RRNAC144G145A146*U156G157G158cWWcWHcWW
25 IL_3CZW_0023CZW0.00000Isolated cWH basepairXRNA (16-mer)U10G11A12*U7||||2_555G8||||2_555A9||||2_555cWWcWHcWW
26 IL_3CZW_0013CZW0.00000Isolated cWH basepairXRNA (16-mer)U10||||2_555G11||||2_555A12||||2_555*U7G8A9cWWcWHcWW
27 IL_2R22_0012R220.06850A+BRNA (13-mer)U6G7A8*U19G20A21cWWcWHcWW
28 IL_3SJ2_0033SJ20.10400Isolated cWH basepairA+BRNA (19-mer) + RNA (17-mer)C13G14G15*C7G8G9cWWcWHcWW
29 IL_3SJ2_0023SJ20.11450Isolated cWH basepairB+ARNA (17-mer)C10G11G12*C10G11G12cWWcWHcWW
30 IL_3SJ2_0013SJ20.11300Isolated cWH basepairB+ARNA (17-mer)C13G14G15*C7G8G9cWWcWHcWW
31 IL_4KQ0_0034KQ00.14100Isolated cWH basepairE+BRNA (19-mer)C9G10G11*C9G10G11cWWcWHcWW
32 IL_4E5C_0014E5C0.15950Isolated cWH basepairA+BRNA (19-mer)C9G10G11*C9G10G11cWWcWHcWW
33 IL_4KQ0_0014KQ00.15210Isolated cWH basepairE+BRNA (19-mer)C15G16G17*C3G4G5cWWcWHcWW
34 IL_4KQ0_0054KQ00.15140Isolated cWH basepairB+ERNA (19-mer)C15G16G17*C3G4G5cWWcWHcWW
35 IL_3R1D_0023R1D0.18630Isolated cWH basepairB+ARNA (11-mer)C5G6G7*C5G6G7cWWcWHcWW
36 IL_406D_002406D0.34670Isolated cWH basepairA+ERNA (17-mer)U8||AG9||AG10||A*U25||AG26||AG27||AcWWncWHcWW
37 IL_3U5F_0233U5F0.62290618S rRNAA420A421G422*C411A412U413cWWcWW
38 IL_3NJ7_0013NJ70.62360A+BRNA (10-mer)C3A4G5*C6A7G8cWWcWW
39 IL_4IOA_0294IOA0.60430Isolated near basepair (H)X LSU rRNAU917A918U919*A883C884A885cWWcWW
40 IL_3U5H_0723U5H0.74582525S rRNAG1623G1624A1625*U1818U1819C1822cWWncWWcWW
41 IL_3U5H_1513U5H0.7192185.8S rRNAU64A65A66*U93C94A96cWWncWScWW
42 IL_4CUV_1574CUV0.7954145.8S RRNAU64A65A66*U93C94A96cWWntHSncWW
43 IL_1VX6_1471VX60.77671C5.8S ribosomal RNAC68A69A70*U96C97G99cWWncWScWW

3D structures

Complete motif including flanking bases
SequenceCounts
CGG*CGG10
GGC*GGC5
UAC*GGA3
UGA*UGA3
AAU*AGU2
CGA*UGG2
UAA*UCGA2
CUGU*AUUCGG1
CUGU*ACUAGG1
CUGU*ACUCGG1
CUGU*ACUCUG1
CAC*GAAG1
UUG*UUG1
AGC*GGU1
GGUG*CGC1
GGG*CGC1
CCA*UGG1
UGG*UGG1
AAG*CAU1
CAG*CAG1
UAU*ACA1
GGA*UUUUC1
CAA*UCAG1
Non-Watson-Crick part of the motif
SequenceCounts
G*G23
A*G5
A*A2
A*CG2
UG*UUCG1
UG*CUAG1
UG*CUCG1
UG*CUCU1
A*AA1
U*U1
GU*G1
C*G1
A*C1
G*UUU1
A*CA1

Release history

Release1.18
Date2014-10-07
Status> 2 parents

Parent motifs

Parent motifCommon motif instancesOnly in IL_85638.1Only in the parent motif
IL_82444.4
Compare
IL_4KQ0_001, IL_4KQ0_002, IL_4KQ0_003, IL_420D_002, IL_4KQ0_005, IL_420D_001, IL_4BPP_020, IL_4KTG_004, IL_4KTG_005, IL_2AW7_011, IL_4KTG_001, IL_4KTG_002, IL_4KTG_003, IL_4KQ0_004, IL_406D_002, IL_3U5F_044, IL_3R1D_002, IL_3W3S_003, IL_3U5F_023, IL_3U5F_022, IL_1VX6_147, IL_1VX6_145, IL_3NJ7_001, IL_4E5C_001, IL_4CUV_157, IL_4IOA_029, IL_3U5H_072, IL_3U5H_151, IL_4BPP_012, IL_3SJ2_002, IL_3SJ2_003, IL_3SJ2_001, IL_3U5F_070, IL_3J7A_019, IL_2R22_001, IL_3CZW_001, IL_3CZW_002IL_4KYY_002, IL_1VW3_049, IL_2QBG_065, IL_4QCN_063, IL_2QEK_002, IL_1S72_062IL_1GID_006, IL_2XXA_011, IL_4QCN_025, IL_1X8W_005, IL_1GID_013
IL_53587.1
Compare
IL_1VW3_049, IL_1S72_062, IL_2QBG_065, IL_4KYY_002, IL_4QCN_063IL_4KQ0_001, IL_4KQ0_002, IL_4KQ0_003, IL_4KQ0_004, IL_4KQ0_005, IL_420D_001, IL_4BPP_020, IL_4KTG_004, IL_4KTG_005, IL_2AW7_011, IL_4KTG_001, IL_4KTG_002, IL_4KTG_003, IL_420D_002, IL_406D_002, IL_3U5F_044, IL_3R1D_002, IL_3W3S_003, IL_3U5F_023, IL_3U5F_022, IL_1VX6_147, IL_1VX6_145, IL_3NJ7_001, IL_4E5C_001, IL_4BPP_012, IL_4IOA_029, IL_3U5H_072, IL_3U5F_070, IL_4CUV_157, IL_3SJ2_002, IL_3SJ2_003, IL_3SJ2_001, IL_3U5H_151, IL_3J7A_019, IL_3CZW_002, IL_3CZW_001, IL_2QEK_002, IL_2R22_001IL_1S72_046, IL_4CUV_084, IL_2QBG_045, IL_3U5H_062, IL_4TS2_003, IL_3U5F_093, IL_4IOA_043, IL_4QCN_041, IL_4CUV_064, IL_1VX6_063, IL_4QCN_030, IL_3U5H_085, IL_1VW3_035, IL_3LOA_003, IL_3U5H_052, IL_1VW3_070, IL_4A1B_081
IL_92602.1
Compare
IL_2QEK_002IL_4KQ0_001, IL_4KQ0_002, IL_4KQ0_003, IL_4KQ0_004, IL_4KQ0_005, IL_420D_001, IL_4BPP_020, IL_4KTG_004, IL_4KTG_005, IL_2AW7_011, IL_4KTG_001, IL_4KTG_002, IL_4KTG_003, IL_420D_002, IL_1S72_062, IL_406D_002, IL_3U5F_044, IL_3R1D_002, IL_3W3S_003, IL_3U5F_023, IL_3U5F_022, IL_1VW3_049, IL_2QBG_065, IL_4QCN_063, IL_1VX6_147, IL_1VX6_145, IL_3NJ7_001, IL_4E5C_001, IL_4BPP_012, IL_4IOA_029, IL_3U5H_072, IL_3U5F_070, IL_4CUV_157, IL_3SJ2_002, IL_3SJ2_003, IL_3SJ2_001, IL_4KYY_002, IL_3U5H_151, IL_3J7A_019, IL_3CZW_002, IL_3CZW_001, IL_2R22_001IL_4CUV_026, IL_4CUV_020, IL_4CUX_091, IL_3KTW_002, IL_3J7A_032, IL_1FJG_010, IL_2AW7_052, IL_4A1B_112, IL_2O3X_004, IL_1NLC_001, IL_1U6B_001, IL_4A1B_115, IL_3U5F_041, IL_4A1B_052, IL_1O9M_004, IL_2O3V_001, IL_4IOA_078, IL_1O9M_003, IL_3U5H_109, IL_1S72_047, IL_4J5V_002, IL_4J5V_001, IL_4CUX_069, IL_4J5V_007, IL_4J5V_006, IL_4J5V_005, IL_3SZX_001, IL_4KNQ_001, IL_4KNQ_002, IL_1VX6_134, IL_4KNQ_004, IL_4KNQ_005, IL_4IOA_044, IL_3J7A_066, IL_405D_002, IL_405D_001, IL_4CUV_139, IL_1ZH5_001, IL_4CUV_133, IL_1YZ9_001, IL_1VX2_007, IL_1VX6_122, IL_1YZ9_002, IL_3J7A_083, IL_2FQN_004, IL_2QBG_096, IL_4BPP_015, IL_4A1C_009, IL_4E59_001, IL_4CUX_089, IL_4CUV_156, IL_4A1B_048, IL_2QBG_018, IL_1VW3_079, IL_3NJ6_002, IL_1T0E_002, IL_4A1B_041, IL_4CUX_040, IL_3U5H_076, IL_1FJG_056, IL_3U5F_050, IL_1VX2_002, IL_1NLC_002, IL_3J7A_079, IL_3J7A_042, IL_4A1B_083, IL_4QCN_079, IL_3J7A_072, IL_3J7A_073, IL_4CUX_015, IL_3U5F_015, IL_3BNL_001, IL_3TD1_006, IL_3J7A_074, IL_4E48_005, IL_4E48_004, IL_1VWW_002, IL_4E48_006, IL_4E48_001, IL_4E48_003, IL_3BNL_004, IL_1VWW_114, IL_4NGF_002, IL_1FJG_058, IL_1VX6_034, IL_1VX6_115, IL_3TD0_005, IL_2QBG_085, IL_4BPP_001, IL_1VX6_110, IL_4IOA_054, IL_1VX6_118, IL_3J7A_077, IL_4IOA_030, IL_1U6B_005, IL_1VW3_009, IL_3U5H_008, IL_4FNJ_002, IL_2QEK_001, IL_1VX2_008, IL_1FJG_044, IL_3U5F_043, IL_1VW3_001, IL_1ZEV_004, IL_1ZEV_005, IL_1ZEV_006, IL_1ZX7_008, IL_1ZEV_002, IL_1ZEV_003, IL_1U9S_007, IL_2O3V_004, IL_3TD0_002, IL_4JK0_005, IL_4CUX_003, IL_3U5H_087, IL_4K31_003, IL_3BNQ_001, IL_1VX6_049, IL_4M4O_001, IL_1VX2_031, IL_4J5V_003, IL_4BPP_073, IL_4BPP_070, IL_3NJ7_002, IL_4K31_002, IL_4K31_001, IL_4E48_002, IL_4BPP_079, IL_4CUV_074, IL_4IOA_104, IL_4A1B_061, IL_2AW7_009, IL_4CUV_039, IL_3CUN_002, IL_2QBG_020, IL_1MFQ_003, IL_4K31_004, IL_4BPP_037, IL_4IOA_109, IL_4IOA_025, IL_4CUV_086, IL_4KYY_003, IL_4QCN_052, IL_4CUX_034, IL_1MZP_001, IL_4BPP_082, IL_4BPP_083, IL_1VWW_074, IL_1KFO_002, IL_3U5F_034, IL_4JK0_004, IL_3U5F_036, IL_1VX2_062, IL_1VW3_092, IL_3UMY_001, IL_1VX6_054, IL_1VX6_052, IL_4BPP_002, IL_4BPP_068, IL_1VW3_068, IL_1FJG_062, IL_3U5F_084, IL_3U5F_087, IL_3U5H_149, IL_4A1B_013, IL_3TD1_001, IL_1VX2_033, IL_3U5F_082, IL_3U5H_022, IL_3U5H_028, IL_3U5F_002, IL_3U5F_089, IL_1VW3_016, IL_3BNQ_006, IL_2QBG_083, IL_3U5H_017, IL_4CUX_022, IL_4CUX_023, IL_1MFQ_002, IL_4IOA_091, IL_3BNP_001, IL_3J7A_028, IL_3D0U_006, IL_1VX2_079, IL_3BNP_004, IL_3RG5_001, IL_4TS2_004, IL_1VWW_165, IL_3BNT_006, IL_3BNT_001, IL_4QCN_094, IL_3IVK_004, IL_157D_002, IL_4KYY_001, IL_4KZD_003, IL_1MWL_004, IL_4M6D_011, IL_1MWL_001, IL_1VX2_086, IL_3U5F_063, IL_4CUV_118, IL_4BPP_088, IL_4CUV_052, IL_3U5H_036, IL_4AOB_005, IL_2AW7_064, IL_2AW7_063, IL_2AW7_062, IL_1VW3_031, IL_3RW6_004, IL_3U5H_133, IL_3DIR_006, IL_3J7A_036, IL_2ZKO_001, IL_3SYW_002, IL_3SYW_003, IL_3SYW_001, IL_1VW3_015, IL_157D_001, IL_1FJG_006, IL_3J7A_038, IL_3J7A_039, IL_4QCN_033, IL_3MEI_002, IL_1VX6_073, IL_1VX6_071, IL_1RPU_001, IL_4A1B_015, IL_1KFO_003, IL_1VX6_078, IL_2FQN_001, IL_4A1B_071, IL_4CUV_047, IL_1VX6_019, IL_4CUV_049, IL_4A1B_034, IL_4IOA_013, IL_4IOA_010, IL_3U5H_128, IL_2OE5_001, IL_1VWW_156, IL_4IOA_019, IL_3U5H_121, IL_1VX6_006, IL_1VW3_043, IL_3U5F_065, IL_2Q1R_002, IL_3U5F_061, IL_3U5H_044, IL_1S72_024, IL_3U5H_049, IL_4CUX_083, IL_1VWW_143, IL_3NJ6_001, IL_3J7A_043, IL_4BPP_058, IL_3SZX_002, IL_3SZX_003, IL_4CUX_044, IL_1T0D_002, IL_3GLP_002, IL_1VWW_024, IL_3J7A_049, IL_3GLP_001, IL_4BPP_056, IL_1XJR_003, IL_4QCN_080, IL_3TD0_006, IL_3TD0_001, IL_4CUV_032, IL_4A1B_028, IL_4FNJ_001, IL_4A1B_027, IL_4A1B_024, IL_4CUV_008, IL_1ZX7_002, IL_4BPP_038, IL_4BPP_034, IL_1VX2_029, IL_5MSF_001, IL_3U5H_114, IL_4CUV_030, IL_3U5H_116, IL_1VX2_021, IL_3U5H_118, IL_4A1B_107, IL_1UN6_005, IL_1ZEV_001, IL_3U5H_051, IL_2QBG_034, IL_3U5F_072, IL_2QBG_030, IL_2Q1R_001, IL_4A1B_104, IL_4M4O_002, IL_1VWW_032, IL_4QCN_014, IL_4QCN_017, IL_1VX6_088, IL_3J7A_054, IL_3FO4_001, IL_4CUX_073, IL_4JK0_002, IL_4CUV_120, IL_1VWW_038, IL_4CUV_122, IL_4JK0_001, IL_1S72_095

Children motifs

This motif has no children motifs.
Annotations
  • (25)
  • Isolated cWH basepair (14)
  • Intercalated tWH (H) (1)
  • Isolated cWH basepair (H) (1)
  • Isolated near basepair (H) (1)
  • Isolated non-canonical cWW pair (1)
  • Basepair signature
    cWW-cWH-cWW
    Heat map statistics
    Min 0.00 | Avg 0.54 | Max 1.12
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