J4_70449.17

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3	break		4		5		6	break		7		8		9		10		11	break		12		13	1-13	3-4	3-9	5-8	6-7	11-12
1	J4_5EL4_030	5EL4	0.4969	3	tRNA junction	3L	tRNA	U	7	A	9	G	10	*	C	25	A	26	G	27	*	U	43	U	44	G	45	G	46	G	49	*	C	65	A	66	cWW	cWW	cHS		ncWWa	cWW
2	J4_5E81_030	5E81	0.3064	3	tRNA junction	3L	tRNA	U	7	A	9	G	10	*	C	25	A	26	G	27	*	U	43	U	44	G	45	G	46	G	49	*	C	65	A	66	cWW	cWW			ncWW	cWW
3	J4_4MGN_001	4MGN	0.3517	3	tRNA junction	B	tRNA-glycine	G	7	A	9	G	10	*	C	24	A	25	C	26	*	G	42	G	43	G	44	G	45	G	48	*	U	64	C	65	cWW	cWW		cWW	cWW	cWW
4	J4_7UQ6_001	7UQ6	0.3353	3		B	tRNA	G	7	A	9	G	10	*	C	24	A	25	C	26	*	G	54	G	55	U	56	C	57	G	60	*	U	76	C	77	cWW	cWW		ncWW	cWW	cWW
5	J4_5HR7_002	5HR7	0.3988	2	tRNA junction	D	tRNA	U	7	C	9	G	10	*	C	25	A	26	C	27	*	G	43	U	44	A	45	A	46	A	48	*	U	64	A	65	cWW	cWW	cHS		cWW	cWW
6	J4_5HR6_001	5HR6	0.3788	2	tRNA junction	C	tRNA	U	6	C	8	G	9	*	C	25	A	26	C	27	*	G	43	U	44	A	45	A	46	A	48	*	U	64	A	65	cWW	cWW	cHS		cWW	cWW
7	J4_1N78_001	1N78	0.4026	2	tRNA junction	C	tRNA(Glu)	A	507	C	509	G	510	*	C	525	G	526	C	527	*	G	543	A	544	A	545	A	546	G	549	*	C	565	U	566	cWW	cWW	cHS	cWW	cWW	cWW
8	J4_2DER_002	2DER	0.2584	2	tRNA junction	D	tRNA	U	7	C	9	G	10	*	C	25	A	26	C	27	*	G	43	U	44	A	45	A	46	A	49	*	U	65	A	66	cWW	cWW	ncHS		cWW	ncWW
9	J4_1IL2_001	1IL2	0.3111	2	tRNA junction	C	tRNA	A	907	A	909	G	910	*	U	925	G	926	G	927	*	C	943	A	944	G	945	A	946	5MC	949	*	G	965	U	966	cWW	cWW	cHS	cWW	cWW	cWW
10	J4_4RDX_003	4RDX	0.2701	3	tRNA junction	C	tRNA	G	7	A	9	G	10	*	C	25	A	26	C	27	*	G	43	G	44	G	45	G	46	G	49	*	U	65	C	66	cWW	cWW	cHS	ncWW	ncWW	cWW
11	J4_7F36_002	7F36	0.3086	3	tRNA junction (H)	F	tRNA	A	7	A	9	G	10	*	C	25	A	26	C	27	*	G	43	G	44	G	45	G	46	G	49	*	U	65	U	66	cWW	cWW	cHS	cWW	cWW	cWW
12	J4_4V9K_004	4V9K	0.3056	3	tRNA junction	AW	tRNA	G	7	A	9	G	10	*	C	25	A	26	C	27	*	G	43	G	44	G	45	G	46	A	49	*	U	65	C	66	cWW	cWW	cHS	cWW	cWW	ncWW
13	J4_6NWY_004	6NWY	0.3194	3	tRNA junction (H)	QV	tRNA	U	7	G	9	G	10	*	C	25	A	26	C	27	*	G	43	G	44	G	45	G	46	G	49	*	U	65	A	66	cWW	cWW	cHS	ncWW	cWW	cWW
14	J4_5L4O_001	5L4O	0.3090	3	tRNA junction	A	tRNA	G	7	G	9	G	10	*	C	25	G	26	U	27	*	A	43	A	44	G	45	A	46	G	49	*	C	65	C	66	cWW	cWW	cHS	ncWW	cWW	cWW
15	J4_1J1U_001	1J1U	0.2685	3	tRNA junction	B	tRNA(Tyr)	G	507	A	509	G	510	*	C	526	G	527	G	528	*	C	544	A	545	U	546	G	547	G	550	*	C	566	C	567	cWW	cWW		cWW	cWW	cWW
16	J4_3KFU_002	3KFU	0.2321	3	tRNA junction	L	tRNA	G	7	A	9	G	10	*	C	25	A	26	G	27	*	U	43	A	44	G	45	G	46	G	49	*	C	65	C	66	cWW	cWW	cHS	ncWw	cWW	cWW
17	J4_1H4S_001	1H4S	0.2276	3	tRNA junction	T	tRNA	G	7	A	9	G	10	*	C	25	A	26	C	27	*	G	43	G	44	G	45	G	46	G	49	*	U	65	C	66	cWW	cWW	cHS	ncWW	cWW	cWW
18	J4_2ZUE_001	2ZUE	0.2436	3	tRNA junction	B	tRNA-Arg	G	907	A	909	G	910	*	C	925	G	926	G	927	*	C	943	A	944	G	945	G	946	C	949	*	G	965	C	966	cWW	cWW	ncHS	cWW	cWW	cWW
19	J4_2AZX_002	2AZX	0.2511	3	tRNA junction	D	72-MER	G	507	G	509	G	510	*	C	525	G	526	U	527	*	A	543	A	544	G	545	G	546	G	549	*	U	565	C	566	cWW	cWW	cHS	cWW	cWW	cWW
20	J4_6GSL_033	6GSL	0.2250	3		3L	tRNA	G	7	A	9	G	10	*	U	26	A	27	C	28	*	G	44	C	45	G	46	G	47	G	50	*	C	66	C	67	ncWW	ncWW	cHS		ncWW	cWW
21	J4_1QU2_001	1QU2	0.2275	3	tRNA junction	T	tRNA	G	7	A	9	G	10	*	C	25	G	26	C	27	*	G	43	A	44	G	45	G	46	G	49	*	U	65	C	66	cWW	cWW		cWW	cWW	cWW
22	J4_1GAX_004	1GAX	0.1465	3	tRNA junction	D	TRNA(VAL)	C	907	A	909	G	910	*	C	924	G	925	C	926	*	G	942	A	943	G	944	G	945	G	948	*	C	964	G	965	ncWW	cWW	cHS	cWW	cWW	cWW
23	J4_1YFG_001	1YFG	0.1831	3	tRNA junction	A	tRNA	G	7	1MG	9	2MG	10	*	C	25	M2G	26	C	27	*	G	43	A	44	U	45	7MG	46	5MC	49	*	G	65	C	66	cWW	cWW		cWW	cWW	cWW
24	J4_5AXM_001	5AXM	0.1411	3	tRNA junction	P	tRNA	U	7	A	9	G	10	*	C	25	G	26	C	27	*	G	43	A	44	G	45	G	46	C	49	*	G	65	A	66	cWW	cWW	cHS	cWW	cWW	cWW
25	J4_6UGG_002	6UGG	0.1563	3		B	tRNA	G	6	A	8	G	9	*	U	25	A	26	C	27	*	G	43	G	44	G	45	G	46	G	49	*	U	65	C	66	cWW	cWW	cHS	cWW	cWW	cWW
26	J4_6JXM_001	6JXM	0.1718	3		B	tRNA	G	7	A	9	G	10	*	C	24	A	25	C	26	*	G	64	G	65	G	66	G	67	G	70	*	U	86	C	87	cWW	cWW	cHS	ncWW	cWW	cWW
27	J4_6UFM_001	6UFM	0.1365	3		A	tRNA	A	7	A	9	G	10	*	C	26	G	27	C	28	*	G	44	A	45	G	46	G	47	G	50	*	C	66	U	67	cWW	cWW	cHS	cWW	cWW	cWW
28	J4_3WQY_001	3WQY	0.1256	3	tRNA junction	C	tRNA	G	1607	A	1609	G	1610	*	C	1625	G	1626	C	1627	*	G	1643	A	1644	G	1645	G	1646	G	1649	*	C	1665	C	1666	cWW	cWW	cHS	cWW	cWW	cWW
29	J4_7EQJ_002	7EQJ	0.0000	3		B	tRNA	U	7	A	9	G	10	*	C	25	A	26	C	27	*	G	43	G	44	G	45	G	46	G	49	*	C	65	A	66	cWW	cWW	cHS	cWW	cWW	cWW
30	J4_7MRL_001	7MRL	0.1287	3		A	tRNA	A	7	A	9	G	10	*	C	25	A	26	U	27	*	A	46	G	47	G	48	G	49	C	52	*	G	68	U	69	cWW	cWW	cHS	cWW	cWW	cWW
31	J4_7UZ0_001	7UZ0	0.1553	3		A	tRNA	G	7	A	9	G	10	*	C	24	A	25	C	26	*	G	58	G	59	G	60	G	61	G	64	*	U	80	C	81	cWW	cWW	ncHS	ncWW	ncWW	cWW
32	J4_3TUP_001	3TUP	0.1631	3	tRNA junction	T	tRNA	G	7	A	9	G	10	*	C	25	A	26	U	27	*	A	43	G	44	U	45	G	46	G	49	*	U	65	C	66	cWW	cWW		ncWW	cWW	ncWW
33	J4_7K98_001	7K98	0.1942	3		C	tRNA	G	7	A	9	G	10	*	C	26	G	27	U	28	*	A	44	A	45	G	46	G	47	G	50	*	C	66	C	67	cWW	cWW	cHS	cWW	cWW	cWW
34	J4_7VNV_001	7VNV	0.2155	3		A	tRNA	G	7	C	9	2MG	10	*	C	25	M2G	26	C	27	*	G	43	A	44	G	45	G	46	5MC	49	*	G	65	C	66	cWW	cWW	cHS	cWW	cWW	cWW
35	J4_5E81_027	5E81	0.1971	3	tRNA junction	2K	tRNA	G	7	G	9	G	10	*	C	26	G	27	U	28	*	A	44	A	45	G	46	G7M	47	G	50	*	C	66	C	67	cWW	cWW	cHS	ncWW	cWW	cWW
36	J4_4V9Q_031	4V9Q	0.1836	3	tRNA junction	DV	tRNA	G	7	G	9	G	10	*	C	25	G	26	U	27	*	A	43	A	44	G	45	G	46	G	49	*	C	65	C	66	cWW	cWW	cHS	cWW	cWW	cWW
37	J4_6CFJ_015	6CFJ	0.2237	3		1x	tRNA	G	7	G	9	G	10	*	C	25	G	26	U	27	*	A	43	A	44	G	45	G	46	G	49	*	C	65	C	66	cWW	cWW	cHS	cWW	cWW	cWW
38	J4_4WT8_034	4WT8	0.2508	3	tRNA junction	D4	tRNA	G	7	G	9	G	10	*	C	26	G	27	U	28	*	A	44	A	45	G	46	G	47	G	50	*	C	66	C	67	ncWW	ncWW	cHS	cWW	cWW	ncWW
39	J4_4TUE_004	4TUE	0.2868	3	tRNA junction	QV	tRNA	G	6	G	8	G	9	*	C	25	G	26	U	27	*	A	43	A	44	G	45	G	46	G	49	*	C	65	C	66	cWW	cWW	cHS	cWW	cWW	cWW
40	J4_4WJ4_001	4WJ4	0.1987	3	tRNA junction	B	tRNA	A	7	A	9	G	10	*	C	25	A	26	A	27	*	U	43	G	44	G	45	G	46	C	49	*	G	65	U	66	cWW	cWW	cHS	ncWW	cWW	cWW
41	J4_7E8O_002	7E8O	0.2544	3		X	tRNA	A	7	A	9	G	10	*	C	24	C	25	C	26	*	G	42	U	43	U	44	G	45	G	48	*	U	64	U	65	cWW	cWW		ncWW	ncWW	cWW
42	J4_7LYF_001	7LYF	0.2833	3		A	Dengue virus SLA	A	7	A	9	G	10	*	C	25	A	26	G	27	*	C	106	G	107	G	108	G	109	C	112	*	G	128	U	129	cWW	ncWW			cWW	cWW
43	J4_3AMU_002	3AMU	0.2626	3	tRNA junction	B	tRNA	G	7	A	9	G	10	*	C	25	G	26	C	27	*	G	43	C	44	G	45	G	46	G	49	*	C	65	C	66	ncWW	cWW	cHS		cWW	cWW
44	J4_1FIR_001	1FIR	0.2473	3	tRNA junction	A	tRNA	A	7	A	9	2MG	10	*	C	25	A	26	PSU	27	*	A	43	G	44	G	45	7MG	46	5MC	49	*	G	65	U	66	cWW	cWW	cHS	cWW	cWW	cWW
45	J4_1F7U_001	1F7U	0.3298	3	tRNA junction	B	TRNA(ARG)	G	907	1MG	909	2MG	910	*	C	925	M2G	926	PSU	927	*	A	943	A	944	G	945	A	946	5MC	949	*	G	965	C	966	cWW	cWW	cHS		cWW	cWW
46	J4_3EPH_001	3EPH	0.2720	3	tRNA junction	E	tRNA	A	7	G	9	G	10	*	C	25	A	26	G	27	*	U	43	U	44	G	45	G	46	C	49	*	G	65	U	66	cWW	cWW			ncWW	cWW
47	J4_3FOZ_002	3FOZ	0.2913	3		D	tRNA(Phe)	A	7	A	9	G	10	*	C	25	A	26	G	27	*	C	43	G	44	U	45	G	46	C	49	*	G	65	U	66	cWW	cWW			cWW	cWW
48	J4_5CCB_001	5CCB	0.5817	3	tRNA junction	N	tRNA	A	7	A	9	G	10	*	C	25	A	26	U	27	*	A	43	G	44	G	45	G	46	C	49	*	G	65	U	66	cWW	cWW	ncHS	cWW	cWW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GUAGCACGGGGUCG*UC	4
UUCGCACGUAACA*UA	3
GUGGCGUAAGGUCG*CC	3
UUAGCAGUUGGUCG*CA	2
AUAGCAUAGGGUCC*GU	2
GUAGCACGGUCGCG*UC	1
AUCGCGCGAAACG*CU	1
AUAGUGGCAGAU5MC*GU	1
AUAGCACGGGGUCG*UU	1
GUAGCACGGGGUCA*UC	1
UUGGCACGGGGUCG*UA	1
G(4SU)GGCGUAAGAUCG*CC	1
GUAGCGGCAUGUCG*CC	1
GUAGCAGUAGGUCG*CC	1
GUAGCACGGGGGCG*UC	1
GUAGCGGCAGGUCC*GC	1
GUGGCGUAAGGUUG*UC	1
GUAGUACGCGGUCG*CC	1
GUAGCGCGAGGUCG*UC	1
CUAGCGCGAGGUCG*CG	1
GU(1MG)2MGC(M2G)CGAU(7MG)(H2U)(5MC)5MC*GC	1
UUAGCGCGAGGUCC*GA	1
GUAGUACGGGGUCG*UC	1
AUAGCGCGAGGUCG*CU	1
GUAGCGCGAGGCCG*CC	1
UUAGCACGGGGUCG*CA	1
GUAGCAUAGUGUCG*UC	1
GUAGCGUAAGGUCG*CC	1
G(4SU)C2MGC(M2G)CGAGG(9QV)(5MC)5MC*GC	1
G(4SU)GGCGUAAG(G7M)UCG*CC	1
G(4SU)GGCGUAAGGUCG*CC	1
AUAGCAAUGGGUCC*GU	1
AUAGCCCGUUGUCG*UU	1
AUAGCAGCGGGUCC*GU	1
GUAGCGCGCGGUCG*CC	1
AUA2MGCAPSUAGG(7MG)(H2U)(5MC)5MC*GU	1
GU(1MG)2MGC(M2G)PSUAAGA(H2U)U5MC*GC	1
AUGGCAGUUGGUCC*GU	1
AUAGCAGCGUGUCC*GU	1

Non-Watson-Crick part of the motif

Sequence	Counts
UAAGGGUC*	12
UAGAGGUC*	6
UCAUAAC*	3
UGGAGGUC*	3
UAAUGGUC*	2
UAAGUGUC*	2
UAAGUCGC*	1
UCGAAAC*	1
UAGAGAU*	1
UGAGGGUC*	1
(4SU)GGAGAUC*	1
UAGAUGUC*	1
UAAAGGUC*	1
UAAGGGGC*	1
UGGAGGUU*	1
UAACGGUC*	1
U(1MG)(M2G)AU(7MG)(H2U)(5MC)*	1
UAGAGGCC*	1
(4SU)C(M2G)AGG(9QV)(5MC)*	1
(4SU)GGAG(G7M)UC*	1
(4SU)GGAGGUC*	1
UACUUGUC*	1
UAGCGGUC*	1
UAAGG(7MG)(H2U)(5MC)*	1
U(1MG)(M2G)AGA(H2U)U*	1
UGAUGGUC*	1

Release history

Release	3.59	3.60	3.61	3.62	3.63	3.64	3.65	3.66
Date	2022-06-22	2022-07-20	2022-08-17	2022-09-14	2022-10-12	2022-11-09	2022-12-07	2023-01-04
Status	Updated, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Sequence	Counts
GUAGCACGGGGUCG*UC	4
UUCGCACGUAACA*UA	3
GUGGCGUAAGGUCG*CC	3
UUAGCAGUUGGUCG*CA	2
AUAGCAUAGGGUCC*GU	2
GUAGCACGGUCGCG*UC	1
AUCGCGCGAAACG*CU	1
AUAGUGGCAGAU5MC*GU	1
AUAGCACGGGGUCG*UU	1
GUAGCACGGGGUCA*UC	1
UUGGCACGGGGUCG*UA	1
G(4SU)GGCGUAAGAUCG*CC	1
GUAGCGGCAUGUCG*CC	1
GUAGCAGUAGGUCG*CC	1
GUAGCACGGGGGCG*UC	1
GUAGCGGCAGGUCC*GC	1
GUGGCGUAAGGUUG*UC	1
GUAGUACGCGGUCG*CC	1
GUAGCGCGAGGUCG*UC	1
CUAGCGCGAGGUCG*CG	1
GU(1MG)2MGC(M2G)CGAU(7MG)(H2U)(5MC)5MC*GC	1
UUAGCGCGAGGUCC*GA	1
GUAGUACGGGGUCG*UC	1
AUAGCGCGAGGUCG*CU	1
GUAGCGCGAGGCCG*CC	1
UUAGCACGGGGUCG*CA	1
GUAGCAUAGUGUCG*UC	1
GUAGCGUAAGGUCG*CC	1
G(4SU)C2MGC(M2G)CGAGG(9QV)(5MC)5MC*GC	1
G(4SU)GGCGUAAG(G7M)UCG*CC	1
G(4SU)GGCGUAAGGUCG*CC	1
AUAGCAAUGGGUCC*GU	1
AUAGCCCGUUGUCG*UU	1
AUAGCAGCGGGUCC*GU	1
GUAGCGCGCGGUCG*CC	1
AUA2MGCAPSUAGG(7MG)(H2U)(5MC)5MC*GU	1
GU(1MG)2MGC(M2G)PSUAAGA(H2U)U5MC*GC	1
AUGGCAGUUGGUCC*GU	1
AUAGCAGCGUGUCC*GU	1

Sequence	Counts
UAAGGGUC*	12
UAGAGGUC*	6
UCAUAAC*	3
UGGAGGUC*	3
UAAUGGUC*	2
UAAGUGUC*	2
UAAGUCGC*	1
UCGAAAC*	1
UAGAGAU*	1
UGAGGGUC*	1
(4SU)GGAGAUC*	1
UAGAUGUC*	1
UAAAGGUC*	1
UAAGGGGC*	1
UGGAGGUU*	1
UAACGGUC*	1
U(1MG)(M2G)AU(7MG)(H2U)(5MC)*	1
UAGAGGCC*	1
(4SU)C(M2G)AGG(9QV)(5MC)*	1
(4SU)GGAG(G7M)UC*	1
(4SU)GGAGGUC*	1
UACUUGUC*	1
UAGCGGUC*	1
UAAGG(7MG)(H2U)(5MC)*	1
U(1MG)(M2G)AGA(H2U)U*	1
UGAUGGUC*	1

Motif J4_70449.17 Version J4_70449.17 of this group appears in releases 3.59 to 3.66 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif J4_70449.17 Version J4_70449.17 of this group appears in releases 3.59 to 3.66

Download

Csv

Json