2MQV Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_2MQV_001 | 1/B/126:131 | UNCG | geometric HL_8ID2_001 HL_61337.3 | |
| HL_2MQV_002 | 2/B/126:131 | UNCG | geometric HL_3IGI_008 HL_61337.3 | |
| HL_2MQV_003 | 3/B/126:131 | UNCG | geometric HL_6CK5_001 HL_61337.3 | |
| HL_2MQV_004 | 4/B/126:131 | UNCG | geometric HL_6CK5_001 HL_61337.3 | |
| HL_2MQV_005 | 5/B/126:131 | UNCG | geometric HL_3IGI_008 HL_61337.3 | |
| HL_2MQV_006 | 6/B/126:131 | UNCG variation | geometric HL_6DME_002 HL_61337.3 | |
| HL_2MQV_007 | 7/B/126:131 | UNCG variation | geometric HL_2NUE_001 HL_51020.2 | |
| HL_2MQV_008 | 8/B/126:131 | UNCG | geometric HL_3IGI_008 HL_61337.3 | |
| HL_2MQV_009 | 9/B/126:131 | UNCG | geometric HL_4AY2_001 HL_61337.3 | |
| HL_2MQV_010 | 10/B/126:131 | UNCG | geometric HL_6CK5_001 HL_61337.3 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_2MQV_001 | 1/B/97:99, 1/B/154:156 | Isolated non-canonical cWW pair | geometric IL_7A0S_026 IL_01003.3 | |
| IL_2MQV_002 | 1/B/106:112, 1/B/144:147 | No text annotation | ||
| IL_2MQV_003 | 1/B/115:118, 1/B/138:141 | Tandem non-canonical cWW pairs | geometric IL_1D4R_003 IL_15225.2 | |
| IL_2MQV_004 | 1/B/121:123, 1/B/134:135 | Minor groove platform | geometric IL_5ML7_009 IL_34520.3 | |
| IL_2MQV_005 | 2/B/97:99, 2/B/154:156 | Stack and bulge | geometric IL_2ET8_001 IL_53541.1 | |
| IL_2MQV_006 | 2/B/106:112, 2/B/144:147 | No text annotation | ||
| IL_2MQV_007 | 2/B/115:118, 2/B/138:141 | Tandem non-canonical cWW pairs | geometric IL_1D4R_003 IL_15225.2 | |
| IL_2MQV_008 | 2/B/121:123, 2/B/134:135 | Minor groove platform | geometric IL_5ML7_009 IL_34520.3 | |
| IL_2MQV_009 | 3/B/96:99, 3/B/154:157 | Tandem non-canonical cWW pairs | geometric IL_5C5W_001 IL_71194.2 | |
| IL_2MQV_010 | 3/B/106:112, 3/B/144:147 | No text annotation | ||
| IL_2MQV_011 | 3/B/115:118, 3/B/138:141 | Tandem non-canonical cWW pairs | geometric IL_1D4R_003 IL_15225.2 | |
| IL_2MQV_012 | 3/B/121:123, 3/B/134:135 | Minor groove platform | geometric IL_5ML7_009 IL_34520.3 | |
| IL_2MQV_013 | 4/B/96:99, 4/B/154:157 | No text annotation | geometric IL_6AZ4_001 NA | |
| IL_2MQV_014 | 4/B/106:112, 4/B/144:147 | No text annotation | ||
| IL_2MQV_015 | 4/B/115:118, 4/B/138:141 | Tandem non-canonical cWW pairs | geometric IL_1D4R_003 IL_15225.2 | |
| IL_2MQV_016 | 4/B/121:123, 4/B/134:135 | Minor groove platform | geometric IL_5ML7_009 IL_34520.3 | |
| IL_2MQV_017 | 5/B/96:99, 5/B/154:157 | No text annotation | ||
| IL_2MQV_018 | 5/B/106:112, 5/B/144:147 | No text annotation | ||
| IL_2MQV_019 | 5/B/115:118, 5/B/138:141 | Tandem non-canonical cWW pairs | geometric IL_1D4R_003 IL_15225.2 | |
| IL_2MQV_020 | 5/B/121:123, 5/B/134:135 | Minor groove platform | geometric IL_5ML7_009 IL_34520.3 | |
| IL_2MQV_021 | 6/B/96:99, 6/B/154:157 | No text annotation | geometric IL_4PHY_003 IL_49140.1 | |
| IL_2MQV_022 | 6/B/106:112, 6/B/144:147 | No text annotation | ||
| IL_2MQV_023 | 6/B/115:118, 6/B/138:141 | Tandem non-canonical cWW pairs | geometric IL_1D4R_003 IL_15225.2 | |
| IL_2MQV_024 | 6/B/121:123, 6/B/134:135 | Minor groove platform | geometric IL_5ML7_009 IL_34520.3 | |
| IL_2MQV_025 | 7/B/96:99, 7/B/154:157 | No text annotation | ||
| IL_2MQV_026 | 7/B/106:112, 7/B/144:147 | No text annotation | ||
| IL_2MQV_027 | 7/B/115:118, 7/B/138:141 | Tandem non-canonical cWW pairs | geometric IL_1D4R_003 IL_15225.2 | |
| IL_2MQV_028 | 7/B/121:123, 7/B/134:135 | Minor groove platform | geometric IL_5ML7_009 IL_34520.3 | |
| IL_2MQV_029 | 8/B/96:99, 8/B/154:157 | No text annotation | ||
| IL_2MQV_030 | 8/B/106:112, 8/B/144:147 | No text annotation | ||
| IL_2MQV_031 | 8/B/115:118, 8/B/138:141 | Tandem non-canonical cWW pairs | geometric IL_1D4R_003 IL_15225.2 | |
| IL_2MQV_032 | 8/B/121:123, 8/B/134:135 | Minor groove platform | geometric IL_5ML7_009 IL_34520.3 | |
| IL_2MQV_033 | 9/B/97:99, 9/B/154:156 | No text annotation | geometric IL_8VFS_003 IL_53541.1 | |
| IL_2MQV_034 | 9/B/106:112, 9/B/144:147 | No text annotation | ||
| IL_2MQV_035 | 9/B/115:118, 9/B/138:141 | Tandem non-canonical cWW pairs | geometric IL_1D4R_003 IL_15225.2 | |
| IL_2MQV_036 | 9/B/121:123, 9/B/134:135 | Minor groove platform | geometric IL_5ML7_009 IL_34520.3 | |
| IL_2MQV_037 | 10/B/96:99, 10/B/154:157 | No text annotation | ||
| IL_2MQV_038 | 10/B/106:112, 10/B/144:147 | No text annotation | ||
| IL_2MQV_039 | 10/B/115:118, 10/B/138:141 | Tandem non-canonical cWW pairs | geometric IL_1D4R_003 IL_15225.2 | |
| IL_2MQV_040 | 10/B/121:123, 10/B/134:135 | Minor groove platform | geometric IL_5ML7_009 IL_34520.3 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_2MQV_041 | Major groove platform with extra cWW | ||
| IL_2MQV_042 | Major groove platform with extra cWW | ||
| IL_2MQV_043 | Major groove platform with extra cWW | ||
| IL_2MQV_044 | Major groove platform with extra cWW | ||
| IL_2MQV_045 | Major groove platform with extra cWW | ||
| IL_2MQV_046 | No text annotation | ||
| IL_2MQV_047 | Major groove platform with extra cWW |
Valid loops
No loops found
Problematic loops
No problematic loops
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