IL_35765.1

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4		5	break		6		7		8		9		10	1-9	1-10	2-3	2-8	2-9	3-7	3-8	4-5	4-6	4-7	5-6	8-9
1	IL_4V9F_020➜	4V9F	0.5997	0	AAA cross-strand stack	0	LSU rRNA	C	663	U	664	A	665	A	666	C	667	*	G	679	G	680	G	681	A	682	G	683		cWW			ntWH					tHS	cWW
2	IL_5J7L_258➜	5J7L	0.6126	0	AAA cross-strand stack	DA	LSU rRNA	U	606	U	607	A	608	A	609	C	610	*	G	618	G	619	G	620	A	621	G	622		cWW			ntWH					tHS	cWW
3	IL_5FDU_016➜	5FDU	0.5743	0		1A	LSU rRNA	U	629	U	630	A	631	A	632	G	633	*	C	643	G	644	G	645	A	646	G	647		cWW			ntWH					tHS	cWW
4	IL_4YAZ_006➜	4YAZ	0.5070	0	Triple sheared	R	Cyclic di-GMP-I riboswitch	U	16	A	17	A	18	A	19	C	20	*	G	35	G	36	G	37	C	38	G	39		cWW			ntSH					tHS	cWW
5	IL_3UCZ_001➜	3UCZ	0.4781	0		R	RNA (92-MER)	C	22	A	23	A	24	A	25	C	26	*	G	41	G	42	A	43	C	44	G	45		cWW			ntSH					tHS	cWW
6	IL_4V91_034➜	4V91	0.4643	0		1	LSU rRNA	U	834	G	835	A	836	A	837	G	838	*	U	855	G	856	G	857	A	858	G	859		cWW	ncSH		tSH		tHS			tHS	cWW
7	IL_4V88_273➜	4V88	0.4512	0		A5	LSU rRNA	U	834	G	835	A	836	A	837	G	838	*	U	855	G	856	G	857	A	858	G	859		cWW			tSH		tHS			tHS	cWW
8	IL_3J79_032➜	3J79	0.4395	0		A	LSU rRNA	U	953	G	954	A	955	A	956	G	957	*	U	974	G	975	G	976	A	977	G	978		cWW			tSH		tHS			tHS	cWW
9	IL_5J7L_263➜	5J7L	0.4358	0	Triple sheared	DA	LSU rRNA	U	703	G	704	A	705	A	706	G	707	*	U	724	G	725	G	726	A	727	G	728		cWW			tSH		tHS			tHS	cWW
10	IL_5FDU_021➜	5FDU	0.4208	0		1A	LSU rRNA	U	750	G	751	A	752	A	753	G	754	*	U	771	G	772	G	773	A	774	G	775		cWW			tSH		tHS			tHS	cWW
11	IL_4V9F_027➜	4V9F	0.4170	0	Triple sheared	0	LSU rRNA	U	794	G	795	A	796	A	797	G	798	*	U	815	G	816	G	817	A	818	A	819		cWW	ncSH		tSH		tHS			tHS	cWW
12	IL_5AJ0_063➜	5AJ0	0.4365	0		A2	LSU rRNA	C	1533	G	1534	A	1535	A	1536	G	1537	*	U	1554	G	1555	G	1556	A	1557	G	1558		cWW			ntSH		tHS			tHS	cWW
13	IL_3J9W_086➜	3J9W	0.3617	0		BA	LSU rRNA	U	750	G	751	A	752	A	753	G	754	*	U	771	G	772	G	773	A	774	G	775		cWW			tSH		tHS			tHS	cWW	cSH
14	IL_5J7L_310➜	5J7L	0.3619	0	Triple sheared	DA	LSU rRNA	U	1720	G	1721	A	1722	G	1723	G	1724	*	U	1736	G	1737	G	1738	A	1739	G	1740		cWW			tSH		tHS			ntHS	cWW
15	IL_3IWN_002➜	3IWN	0.4110	0	Triple sheared	A	C-di-GMP riboswitch	C	12	A	13	A	14	A	15	C	16	*	G	31	G	32	A	33	C	34	G	35		cWW			ntSH					tHS	cWW
16	IL_3J79_064➜	3J79	0.4163	0		A	LSU rRNA	U	1800	G	1801	A	1802	A	1803	C	1804	*	G	2028	G	2029	G	2030	A	2031	A	2032	ntSH	cWW			tSH		tHS			tHS	cWW
17	IL_4V91_072➜	4V91	0.4236	0		1	LSU rRNA	U	1645	G	1646	A	1647	A	1648	U	1649	*	A	1806	G	1807	G	1808	A	1809	A	1810		cWW			tSH		tHS			tHS	cWW
18	IL_4V88_316➜	4V88	0.3614	0		A5	LSU rRNA	U	1645	G	1646	A	1647	A	1648	U	1649	*	A	1806	G	1807	G	1808	A	1809	A	1810		cWW			tSH		tHS			tHS	cWW
19	IL_3J9W_142➜	3J9W	0.3008	0		BA	LSU rRNA	C	1911	G	1912	A	1913	A	1914	U	1915	*	A	1885	G	1886	G	1887	A	1888	G	1889		cWW			tSH		tHS			tHS	cWW
20	IL_5AJ0_106➜	5AJ0	0.3684	0		A2	LSU rRNA	C	2568	G	2569	A	2570	U	2571	C	2572	*	G	2731	G	2732	G	2733	A	2734	G	2735		cWW			tSH		tHS			ntHS	cWW
21	IL_3J7P_085➜	3J7P	0.2999	0		5	LSU rRNA	C	2589	G	2590	A	2591	U	2592	C	2593	*	G	2752	G	2753	G	2754	A	2755	G	2756		cWW			tSH		tHS		ntHW	tHS	cWW	ncSH
22	IL_2A64_006➜	2A64	0.3372	0	Triple sheared	A	ribonuclease P RNA	C	378	G	379	A	380	A	381	G	382	*	C	347	G	348	G	349	A	350	G	351		cWW			ntSH		tHS			tHS	cWW
23	IL_4IOA_070➜	4IOA	0.3275	0	Triple sheared	X	LSU rRNA	C	1865	G	1866	A	1867	A	1868	A	1869	*	U	1848	G	1849	G	1850	A	1851	G	1852		cWW			ntSH		tHS			tHS	cWW
24	IL_5FDU_076➜	5FDU	0.3193	0		1A	LSU rRNA	C	1904	G	1905	A	1906	A	1907	C	1908	*	G	1887	G	1888	G	1889	A	1890	G	1891		cWW			tSH		tHS			tHS	cWW
25	IL_5A2Q_089➜	5A2Q	0.2944	0		2	SSU rRNA	A	1788	G	1789	A	1790	A	1791	G	1792	*	C	1742	G	1743	G	1744	A	1745	U	1746		cWW			tSH		tHS			tHS	cWW	ncSH
26	IL_4BTS_349➜	4BTS	0.3200	0		DA	SSU rRNA	G	1672	A	1673	A	1674	A	1675	A	1676	*	U	1649	G	1650	G	1651	A	1652	C	1653		cWW			tSH		tHS			tHS	cWW
27	IL_2A64_005➜	2A64	0.3133	0	Triple sheared	A	ribonuclease P RNA	C	284	G	285	A	286	A	287	G	288	*	C	297	G	298	G	299	A	300	G	301		cWW			tSH		tHS			tHS	cWW
28	IL_3DHS_004➜	3DHS	0.3860	0	Triple sheared	A	RNase P RNA	C	284	G	285	A	286	A	287	G	288	*	C	297	G	298	G	299	A	300	G	301		cWW	cSH		tSH		ntHS			tHS	cWW
29	IL_4V8P_427➜	4V8P	0.4261	0		F1	LSU rRNA	U	3217	U	3218	A	3219	A	3220	C	3221	*	G	3189	A	3190	G	3191	C	3192	G	3193		cWW			ntSH		ntHS			tHS	cWW
30	IL_3JAM_085➜	3JAM	0.4381	0		2	SSU rRNA	A	1717	G	1718	A	1719	A	1720	U	1721	*	A	1676	G	1677	G	1678	A	1679	U	1680		cWW			ntSS		tHS			tHS	cWW
31	IL_4V88_474➜	4V88	0.4394	0	Triple sheared	A6	SSU rRNA	A	1719	G	1720	A	1721	A	1722	U	1723	*	A	1678	G	1679	G	1680	A	1681	U	1682		cWW			ntSW		tHS			tHS	cWW
32	IL_3J7A_080➜	3J7A	0.4331	0		A	SSU rRNA	G	2011	G	2012	A	2013	A	2014	A	2015	*	U	1975	G	1976	G	1977	A	1978	C	1979		cWW			ntSW		tHS			tHS	cWW	ncSS
33	IL_1U6B_002➜	1U6B	0.2713	0	Triple sheared	B	197-MER	G	56	A	57	A	58	A	59	C	60	*	G	84	C	85	A	86	A	87	C	88		cWW			tSH		tHS				cWW
34	IL_3J7P_233➜	3J7P	0.2530	0		S2	SSU rRNA	U	1733	G	1734	A	1735	G	1736	G	1737	*	U	1797	C	1798	G	1799	A	1800	A	1801		cWW	ncSH		tSH		tHS			ncWW	cWW
35	IL_4V9F_085➜	4V9F	0.2911	0	Triple sheared	0	LSU rRNA	C	2515	G	2516	A	2517	C	2518	C	2519	*	G	2501	C	2502	A	2503	A	2504	G	2505		cWW			tSH		tHS				cWW
36	IL_4V4Q_235➜	4V4Q	0.3594	0		CA	SSU rRNA	C	1259	G	1260	A	1261	C	1262	C	1263	*	G	1272	C	1273	A	1274	A	1275	G	1276		cWW			tSH		tHS				cWW
37	IL_3J9W_050➜	3J9W	0.2551	0		AA	SSU rRNA	C	1268	G	1269	A	1270	A	1271	A	1272	*	U	1281	U	1282	A	1283	A	1284	G	1285		cWW			ntSH		tHS			ntHS	cWW
38	IL_5AJ3_006➜	5AJ3	0.2161	0		A	SSU rRNA	C	97	A	98	A	99	A	100	A	101	*	U	81	C	82	C	83	A	84	G	85		cWW			tSH		tHS				cWW
39	IL_5J7L_274➜	5J7L	0.1808	0	Triple sheared	DA	LSU rRNA	C	898	A	899	A	900	C	901	C	902	*	G	875	C	876	A	877	A	878	G	879		cWW			tSH		ntHS				cWW
40	IL_4WFL_001➜	4WFL	0.0000	0	Triple sheared	A	LSRP RNA	C	91	G	92	A	93	C	94	A	95	*	U	72	C	73	G	74	A	75	G	76		cWW			tSH		tHS				cWW
41	IL_3J7Y_046➜	3J7Y	0.2014	0		A	LSU rRNA	C	2872	A	2873	A	2874	A	2875	G	2876	*	C	2856	U	2857	A	2858	A	2859	G	2860		cWW			tSH		tHS			tHS	cWW
42	IL_3J9W_164➜	3J9W	0.2140	0		BA	LSU rRNA	C	2509	G	2510	A	2511	C	2512	G	2513	*	C	2495	C	2496	A	2497	A	2498	G	2499		cWW			tSH		tHS				cWW
43	IL_5J7L_338➜	5J7L	0.1643	0	Triple sheared	DA	LSU rRNA	C	2480	G	2481	A	2482	C	2483	G	2484	*	C	2466	C	2467	A	2468	A	2469	G	2470		cWW			tSH		tHS				cWW
44	IL_4V8P_412➜	4V8P	0.2059	0		F1	LSU rRNA	C	2837	G	2838	A	2839	C	2840	G	2841	*	C	2823	C	2824	A	2825	A	2826	G	2827		cWW			tSH		tHS				cWW
45	IL_5AJ0_150➜	5AJ0	0.2031	0		A2	LSU rRNA	C	4388	G	4389	A	4390	C	4391	G	4392	*	C	4374	C	4375	A	4376	A	4377	G	4378		cWW			tSH		ntHS				cWW
46	IL_4V19_048➜	4V19	0.2640	0		A	LSU rRNA	C	1301	G	1302	A	1303	C	1304	A	1305	*	U	1287	C	1288	U	1289	A	1290	G	1291		cWW			tSH		ntHS				cWW
47	IL_4IOA_089➜	4IOA	0.2444	0	Triple sheared	X	LSU rRNA	C	2459	G	2460	G	2461	C	2462	G	2463	*	C	2445	C	2446	G	2447	A	2448	G	2449		cWW			tSH		ntHS				cWW
48	IL_5FDU_097➜	5FDU	0.2612	0		1A	LSU rRNA	C	2492	G	2493	G	2494	C	2495	G	2496	*	C	2478	C	2479	G	2480	A	2481	G	2482		cWW			tSH		ntHS				cWW
49	IL_3J79_103➜	3J79	0.3328	0		A	LSU rRNA	C	3208	G	3209	A	3210	C	3211	G	3212	*	C	3194	C	3195	A	3196	A	3197	G	3198		cWW			tSH		tHS				cWW
50	IL_4V88_353➜	4V88	0.3670	0		A5	LSU rRNA	C	2849	G	2850	A	2851	C	2852	A	2853	*	U	2835	C	2836	A	2837	A	2838	G	2839		cWW			tSH		tHS				cWW
51	IL_4V91_115➜	4V91	0.3673	0		1	LSU rRNA	C	2849	G	2850	A	2851	C	2852	A	2853	*	U	2835	C	2836	A	2837	A	2838	G	2839		cWW			tSH		tHS				cWW
52	IL_5AN9_039➜	5AN9	0.3967	0		N	LSU rRNA	C	3182	G	3183	A	3184	C	3185	G	3186	*	C	3168	C	3169	A	3170	A	3171	G	3172		cWW			tSH		ntHS				cWW
53	IL_3J7P_122➜	3J7P	0.3720	0		5	LSU rRNA	C	4426	G	4427	A	4428	C	4429	G	4430	*	C	4412	C	4413	A	4414	A	4415	G	4416		cWW			tSH		tHS				cWW
54	IL_5AJ0_056➜	5AJ0	0.3475	0		A2	LSU rRNA	C	1432	C	1433	G	1434	A	1435	G	1436	*	C	1413	C	1414	G	1415	A	1416	G	1417		ncSW			tSH		tHS			ncWW	cWW
55	IL_3J7P_168➜	3J7P	0.3983	0		S2	SSU rRNA	G	207	G	208	A	209	U	210	G	211	*	C	188	U	189	G	190	A	191	C	192		cWW			tSH		tHS			ncWW	cWW
56	IL_3J7P_223➜	3J7P	0.5860	0		S2	SSU rRNA	C	1559	U	1560	A	1561	C	1562	G	1563	*	C	1572	G	1573	C	1574	G	1575	G	1576		cWW		ncWW	ncWW	ncWW		ncWH			cWW
57	IL_3J7A_061➜	3J7A	0.7444	1		A	SSU rRNA	C	1440	C	1441	U	1442	C	1444	U	1445	*	A	1628	G	1629	A	1630	G	1631	G	1632		cWW					ncWW				cWW
58	IL_3J7A_047➜	3J7A	0.7122	0		A	SSU rRNA	U	1059	G	1060	A	1061	A	1062	G	1063	*	C	1079	G	1080	U	1081	A	1082	A	1083		cWW			tSH		ntWW			tHS	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CGACG*CCAAG	7
UGAAG*UGGAG	6
CGAAG*CGGAG	3
CGGCG*CCGAG	2
CGAUC*GGGAG	2
AGAAU*AGGAU	2
CGACC*GCAAG	2
CGACA*UCAAG	2
UGAAU*AGGAA	2
CAAAC*GGACG	2
CAAAA*UCCAG	1
CAACC*GCAAG	1
CCUGCU*AGAGG	1
UGAAG*CGUAA	1
CGAAA*UUAAG	1
CGACA*UCGAG	1
CAAAG*CUAAG	1
UGAGG*UCGAA	1
CGACA*UCUAG	1
GGAUG*CUGAC	1
CUACG*CGCGG	1
CCGAG*CCGAG	1
UUAAC*GAGCG	1
CGAAG*UGGAG	1
UGAGG*UGGAG	1
UGAAG*UGGAA	1
UAAAC*GGGCG	1
UUAAC*GGGAG	1
UUAAG*CGGAG	1
UGAAC*GGGAA	1
CGAAU*AGGAG	1
CUAAC*GGGAG	1
GGAAA*UGGAC	1
GAAAA*UGGAC	1
AGAAG*CGGAU	1
CGAAA*UGGAG	1
CGAAC*GGGAG	1
GAAAC*GCAAC	1

Non-Watson-Crick part of the motif

Sequence	Counts
GAA*GGA	21
GAC*CAA	11
UAA*GGA	3
GAU*GGA	2
GGC*CGA	2
AAA*GAC	2
GAC*CUA	1
AAA*UAA	1
UAC*GCG	1
GAA*GUA	1
CUGC*GAG	1
GAC*CGA	1
GAU*UGA	1
CGA*CGA	1
GAA*UAA	1
AAA*GGA	1
GAG*GGA	1
AAA*GGC	1
UAA*AGC	1
AAA*CAA	1
AAA*CCA	1
GAG*CGA	1
AAC*CAA	1

Release history

Release	2.0
Date	2017-04-24
Status	New id, 2 parents

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Motif IL_35765.1 Version IL_35765.1 of this group appears in releases 2.0 to 2.0 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_35765.1 Version IL_35765.1 of this group appears in releases 2.0 to 2.0

Download

Csv

Json