Motif IL_85647.3 Version IL_85647.3 of this group appears in releases 1.1 to 1.13

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name for chain		1		2		3		4		5		6		7		8	break		9		10		11		12		13		14		15	1-15	2-14	3-13	4-12	5-6	6-11	7-10	8-9
1	IL_4A1C_008	4A1C	0.2124	0		3	5S rRNA	G	71	U	72	U	73	A	74	G	75	U	76	A	77	C	78	*	G	98	G	99	A	100	A	101	G	102	U	103	C	104	cWW			tHH	ncSH	tWH	tHS	cWW
2	IL_4IOA_007	4IOA	0.1821	0	8x7 Sarcin-Ricin; G-bulge	X	LSU rRNA	G	215	U	216	U	217	A	218	G	219	U	220	A	221	G	222	*	C	230	G	231	A	232	A	233	C	234	C	235	C	236	cWW		tSH	tHH	cSH	tWH	tHS	cWW
3	IL_4A1B_003	4A1B	0.1559	0		1	LSU rRNA	C	80	C	81	C	82	A	83	G	84	U	85	A	86	A	87	*	U	95	G	96	A	97	A	98	C	99	A	100	G	101	cWW	ncWW	tSH	tHH	cSH	tWH	tHS	cWW
4	IL_1Q96_003	1Q96	0.1018	0		C	sarcin/ricin 28S rRNA	C	6	U	7	C	8	A	9	G	10	U	11	A	12	U	13	*	A	18	G	19	A	20\|\|A	A	21\|\|A	C	22\|\|A	C	23	G	24	cWW		tSH	tHH	cSH	tWH	tHS	cWW
5	IL_1Q96_001	1Q96	0.0000	0	8x7 Sarcin-Ricin; G-bulge	A	sarcin/ricin 28S rRNA	C	6	U	7	C	8	A	9	G	10	U	11	A	12	U	13	*	A	18	G	19	A	20	A	21	C	22	C	23	G	24	cWW		tSH		cSH	tWH	tHS	cWW
6	IL_1JBR_001	1JBR	0.0890	0	8x7 Sarcin-Ricin; G-bulge	C+F	RNA (18-mer) + RNA (13-mer)	C	6	U	7	C	8	A	9	G	10	U	11	A	12	C	13	*	G	18	G	19	A	20	A	21	C	22	C	23	G	24	cWW		tSH	tHH	cSH	tWH	tHS	cWW
7	IL_3U5H_122	3U5H	0.1487	0		5	LSU rRNA	C	3018	U	3019	U	3020	A	3021	G	3022	U	3023	A	3024	C	3025	*	G	3030	G	3031	A	3032	A	3033	C	3034	A	3035	G	3036	cWW		tSH	tHH	cSH	tWH	tHS	cWW
8	IL_4A1B_118	4A1B	0.1947	0		1	LSU rRNA	G	3007	U	3008	U	3009	A	3010	G	3011	U	3012	A	3013	C	3014	*	G	3019	G	3020	A	3021	A	3022	C	3023	A	3024	C	3025	cWW		ntSH	tHH		tWH	tHS	cWW
9	IL_2QBG_011	2QBG	0.1920	0		B	LSU rRNA	C	201	U	202	A	203	A	204	G	205	U	206	A	207	C	208	*	G	188	G	189	A	190	A	191	C	192	U	193	G	194	cWW	cwW	tSH	tHH	cSH	tWH	tHS	cWW
10	IL_3V2F_006	3V2F	0.1854	0		A	LSU rRNA	C	201	U	202	C	203	A	204	G	205	U	206	A	207	C	208	*	G	188	G	189	A	190	A	191	C	192	U	193	G	194	cWW	cwW	tSH	tHH	cSH	tWH	tHS	cWW
11	IL_4IOA_006	4IOA	0.2008	0	8x7 Sarcin-Ricin; G-bulge	X	LSU rRNA	C	178	U	179	C	180	A	181	G	182	U	183	A	184	C	185	*	G	165	G	166	A	167	A	168	C	169	U	170	G	171	cWW	cwW	ntSH	tHH	cSH	tWH	tHS	cWW
12	IL_1S72_006	1S72	0.2005	0	8x7 Sarcin-Ricin; G-bulge (H)	0	LSU rRNA	C	171	U	172	C	173	A	174	G	175	U	176	A	177	U	178	*	A	158	G	159	A	160	A	161	C	162	U	163	G	164	cWW	cwW	tSH	tHH	cSH	tWH	tHS	cWW
13	IL_3U5H_148	3U5H	0.2713	1		7	5S rRNA	A	72	C	74	G	75	A	76	G	77	U	78	A	79	G	80	*	C	100	G	101	A	102	A	103	A	104	C	105	U	106	cWW	cWw	tSH	tHH	cSH	tWH	tHS	cWW
14	IL_2QBG_048	2QBG	0.2867	0		B	LSU rRNA	A	1262	U	1263	A	1264	A	1265	G	1266	U	1267	A	1268	A	1269	*	U	2011	G	2012	A	2013	A	2014	A	2015	U	2016	U	2017	cWW	cwW	tSH	tHH	cSH	tWH	tHS	cWW
15	IL_3V2F_046	3V2F	0.2702	0		A	LSU rRNA	A	1262	U	1263	G	1264	A	1265	G	1266	U	1267	A	1268	A	1269	*	U	2011	G	2012	A	2013	A	2014	A	2015	U	2016	U	2017	cWW	cwW	tSH	tHH	cSH	tWH	tHS	cWW
16	IL_4IOA_047	4IOA	0.3485	0	8x7 Sarcin-Ricin; G-bulge	X	LSU rRNA	A	1275	U	1276	G	1277	A	1278	G	1279	U	1280	A	1281	A	1282	*	U	1994	G	1995	A	1996	A	1997	A	1998	U	1999	U	2000	cWW	cwW	tSH		cSH	tWH	tHS	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CUCAGUAU*AGAACCG	2
CUCAGUAC*GGAACUG	2
AUGAGUAA*UGAAAUU	2
GUUAGUAC*GGAAGUC	1
GUUAGUAG*CGAACCC	1
CCCAGUAA*UGAACAG	1
CUCAGUAC*GGAACCG	1
CUUAGUAC*GGAACAG	1
GUUAGUAC*GGAACAC	1
CUAAGUAC*GGAACUG	1
CUCAGUAU*AGAACUG	1
ACCGAGUAG*CGAAACU	1
AUAAGUAA*UGAAAUU	1

Non-Watson-Crick part of the motif

Sequence	Counts
UCAGUA*GAACC	3
UCAGUA*GAACU	3
UUAGUA*GAACA	2
UGAGUA*GAAAU	2
UUAGUA*GAAGU	1
UUAGUA*GAACC	1
CCAGUA*GAACA	1
UAAGUA*GAACU	1
CCGAGUA*GAAAC	1
UAAGUA*GAAAU	1

Release history

Release	1.1	1.2	1.3	1.4	1.5	1.6	1.7	1.8	1.9	1.10	1.11	1.12	1.13
Date	2013-04-08	2013-05-04	2013-06-01	2013-07-01	2013-08-03	2013-08-31	2013-09-28	2013-11-05	2013-12-07	2014-01-04	2014-02-01	2014-03-01	2014-03-29
Status	Updated, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

Parent motif	Common motif instances	Only in IL_85647.3	Only in the parent motif
IL_85647.2 Compare	IL_2QBG_048, IL_1Q96_003, IL_4A1C_008, IL_1Q96_001, IL_1S72_006, IL_3V2F_046, IL_3U5H_148, IL_1JBR_001, IL_4A1B_003, IL_2QBG_011, IL_4A1B_118, IL_3V2F_006, IL_3U5H_122	IL_4IOA_007, IL_4IOA_006, IL_4IOA_047	IL_2ZJR_045, IL_2ZJR_006, IL_2ZJR_007

Children motifs

Child motif	Common motif instances	Only in IL_85647.3	Only in the child motif
IL_85647.4 Compare	IL_2QBG_048, IL_1Q96_003, IL_4A1C_008, IL_1Q96_001, IL_1S72_006, IL_3U5H_148, IL_1JBR_001, IL_4IOA_047, IL_4A1B_003, IL_2QBG_011, IL_4A1B_118, IL_4IOA_006, IL_4IOA_007, IL_3U5H_122	IL_3V2F_046, IL_3V2F_006	IL_1VW3_038, IL_4NVV_006, IL_1VW3_011, IL_4NVV_048

Annotations: (10)
8x7 Sarcin-Ricin; G-bulge (5)
8x7 Sarcin-Ricin; G-bulge (H) (1)
Basepair signature: cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
Heat map statistics: Min 0.06 | Avg 0.23 | Max 0.39

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Coloring options: Nucleotide numbers

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