Description:
Sarcin-ricin parent motif with 15 Nts
Basepair signature:
cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
Free text annotation:
Complete Sarcin-ricin IL motif
Intraclusteral linkage
Min 0.06 | Avg 0.26 | Max 0.46
Help
#D - ordering by discrepancy relative to the exemplar, #S - ordering by similarity (same as in the heat map). More
#D#SLoop idPDBDiscBulges 1 2 3 4 5 6 7 8break 9 10 11 12 13 14 151-152-143-113-123-134-54-125-66-76-117-108-9
1101Q930.00000C6U7C8A9G10U11A12G13*C18G19A20A21C22C23G24cWWntSHtSHtHHcSHtWHtHScWW
293J9W0.13440C241U242G243A244G245U246A247G248*C256G257A258A259A260C261G262cWWtSHtHHcSHtWHtHScWW
3111JBR0.13680C6U7C8A9G10U11A12C13*G18G19A20A21C22C23G24cWWntSHtSHtHHcSHtWHtHScWW
4144V880.15390C3018U3019U3020A3021G3022U3023A3024C3025*G3030G3031A3032A3033C3034A3035G3036cWWtSHtSHtHHcSHtWHtHScWW
5121JBR0.15410C6U7C8A9G10U11A12C13*G18G19A20A21C22C23G24cWWntSHtSHtHHcSHtWHtHScWW
674IOA0.16820G215U216U217A218G219U220A221G222*C230G231A232A233C234C235C236cWWntSHntSHtHHcSHtWHtHScWW
7154V910.17010C3018U3019U3020A3021G3022U3023A3024C3025*G3030G3031A3032A3033C3034A3035G3036cWWtSHtSHtHHcSHtWHtHScWW
884V8P0.17980C80C81C82A83G84U85A86A87*U95G96A97A98C99A100G101cWWtSHtHHcSHtWHtHScWW
9253J7Y0.18970A2306U2307A2308A2309G2310U2311A2312A2313*U2674G2675A2676A2677A2678U2679U2680cWWcWWtSHtHHcSHtWHtHScWW
10215FDU0.19250C190U191C192A193G194U195A196C197*G177G178A179A180C181U182G183cWWcWWtSHtHHcSHtWHtHScWW
1153J920.19390G71U72U73A74G75U76A77C78*G98G99A100A101U102A103C104cWWntSHtHHcSHtWHtHScWW
12163J7P0.19720C4596U4597C4598A4599G4600U4601A4602C4603*G4608G4609A4610A4611C4612C4613G4614cWWntSHtSHtHHcSHtWHtHScWW
13195J7L0.20120C201U202A203A204G205U206A207C208*G188G189A190A191C192U193G194cWWcWWtSHtHHcSHtWHtHScWW
14204IOA0.20220C178U179C180A181G182U183A184C185*G165G166A167A168C169U170G171cWWcWWtSHtHHcSHtWHtHScWW
15175AN90.20530U3354U3355U3356A3357G3358U3359A3360C3361*G3366G3367A3368A3369C3370U3371G3372cWWncWWtSHtHHcSHtWHtHScWW
16224V9F0.21490C171U172C173A174G175U176A177U178*A158G159A160A161C162U163G164cWWcWWntSHtHHcSHtWHtHScWW
17183J9W0.21560C204U205A206A207G208U209A210C211*G191G192A193A194C195U196G197cWWcWWtSHtHHcSHtWHtHScWW
1863J7Q0.22010G71U72U73A74G75U76A77C78*G98G99A100A101U102A103C104cWWntSHtHHcSHtWHtHScWW
19134V8P0.22210G3007U3008U3009A3010G3011U3012A3013C3014*G3019G3020A3021A3022C3023A3024C3025cWWncSWntSHtHHncSHtWHtHScWW
20244V190.22490C1452C1453C1454A1455G1456U1457A1458C1459*G1464G1465A1466C1467A1468A1469G1470cWWncWWntSHntHHcSHtWHtHScWW
2144V8P0.22990G71U72U73A74G75U76A77C78*G98G99A100A101G102U103C104cWWntWHtHHcSHtWHtHScWW
22264V190.23530A638U639G640A641G642U643A644A645*U1004G1005A1006A1007A1008U1009U1010cWWcWWtSHtHHcSHtWHtHScWW
23234U4U0.24641A72C74G75A76G77U78A79G80*C100G101A102A103A104C105U106cWWcWWtSHtHHcSHtWHtHScWW
24275J7L0.25450A1262U1263A1264A1265G1266U1267A1268A1269*U2011G2012A2013A2014A2015U2016U2017cWWcWWtSHtHHcSHtWHtHScWW
2523J790.25500U82U83U84A85G86U87A88A89*U97G98A99A100C101A102A103cWWtSHtSWtHHcSHtWHtHScWW
26285FDU0.25510A1308U1309G1310A1311G1312U1313A1314A1315*U2033G2034A2035A2036A2037U2038U2039cWWcWWtSHtHHcSHtWHtHScWW
2735AJ00.27430C81U82C83A84G85U86A87A88*U96G97A98A99C100A101G102cWWntWWntWHtSHtSHtHHcSHncWHtWHtHScWW
28293J9W0.28560A1302U1303G1304A1305G1306U1307A1308G1309*U2040G2041A2042A2043A2044U2045U2046cWWcWWtSHncSStHHcSHtWHtHScWW
2913J7P0.29780C81U82C83A84G85U86A87A88*U96G97A98A99C100A101G102cWWntWWntWHtSHtSHtHHcSHncWHtWHtHScWW
30315AJ00.30160C4558U4559C4560A4561G4562U4563A4564C4565*G4570G4571A4572A4573C4574C4575G4576cWWtSHtHHtWHtHScWW
31304IOA0.33600A1275U1276G1277A1278G1279U1280A1281A1282*U1994G1995A1996A1997A1998U1999U2000cWWcWWtSHntSHcSHtWHtHScWW
32323J7Y0.38140C3119C3120C3121U3122G3123U3124A3125C3126*G3131G3132A3133C3134A3135A3136G3137cWWncWWtSHntWHtHScWW

3D structures

Complete motif including flanking bases
SequenceCounts
CUCAGUAC*GGAACCG4
AUGAGUAA*UGAAAUU3
GUUAGUAC*GGAAUAC2
CUCAGUAC*GGAACUG2
CUAAGUAC*GGAACUG2
AUAAGUAA*UGAAAUU2
CUCAGUAA*UGAACAG2
CUUAGUAC*GGAACAG2
CCCUGUAC*GGACAAG1
ACCGAGUAG*CGAAACU1
UUUAGUAA*UGAACAA1
GUUAGUAC*GGAAGUC1
AUGAGUAG*UGAAAUU1
UUUAGUAC*GGAACUG1
GUUAGUAG*CGAACCC1
CUGAGUAG*CGAAACG1
CCCAGUAA*UGAACAG1
CUCAGUAG*CGAACCG1
GUUAGUAC*GGAACAC1
CUCAGUAU*AGAACUG1
CCCAGUAC*GGACAAG1
Non-Watson-Crick part of the motif
SequenceCounts
UCAGUA*GAACC5
UGAGUA*GAAAU4
UUAGUA*GAACA4
UCAGUA*GAACU3
UCAGUA*GAACA2
UAAGUA*GAACU2
UUAGUA*GAAUA2
UAAGUA*GAAAU2
CCGAGUA*GAAAC1
UGAGUA*GAAAC1
CCUGUA*GACAA1
UUAGUA*GAACC1
UUAGUA*GAAGU1
CCAGUA*GAACA1
UUAGUA*GAACU1
CCAGUA*GACAA1

Release history

Release2.0
Date2017-04-24
StatusNew id, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Mutual discrepancy heat map legend: