HL_53597.1

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4		5		6		7		8	1-8	2-7	3-5
1	HL_7PMQ_003	7PMQ	0.4622	0		F	RNA (42-MER)	G	8	U	9	U	10	U	11	C	12	G	13	A	14	C	15	cWW
2	HL_3W3S_002	3W3S	0.3831	1	tRNA anticodon loop	B	Selenocysteine transfer RNA	A	31	C	32	U	33	C	35	A	36	A	37	A	38	U	39	cWW	ncWW
3	HL_2AKE_002	2AKE	0.2389	1	tRNA anticodon loop	B	tRNA	A	31	C	32	U	33	C	35	A	36	G	37	A	38	U	39	cWW
4	HL_1J1U_002	1J1U	0.2528	1	tRNA anticodon loop	B	tRNA(Tyr)	A	532	C	533	U	534	U	536	A	537	G	538	A	539	U	540	cWW	ncWW
5	HL_2AZX_005	2AZX	0.0000	1	tRNA anticodon loop	D	72-MER	A	531	C	532	U	533	C	535	A	536	G	537	A	538	U	539	cWW
6	HL_6UFM_002	6UFM	0.1398	1	tRNA anticodon loop	A	tRNA	G	32	C	33	U	34	A	36	U	37	A	38	A	39	C	40	cWW
7	HL_4TUE_034	4TUE	0.1591	1	tRNA anticodon loop	QV	tRNA	G	31	C	32	U	33	A	35	U	36	A	37	A	38	C	39	cWW
8	HL_4V9Q_214	4V9Q	0.2046	1	tRNA anticodon loop	DV	tRNA	G	31	C	32	U	33	A	35	U	36	A	37	A	38	C	39	cWW
9	HL_4V50_137	4V50	0.1983	1	tRNA anticodon loop	CW	PHE TRNA (UNMODIFIED BASES)	G	31	C	32	U	33	A	35	U	36	A	37	A	38	C	39	cWW	ncWW
10	HL_4WT8_216	4WT8	0.2056	1	tRNA anticodon loop	D4	tRNA	G	32	C	33	U	34	A	36	U	37	A	38	A	39	C	40	cWW
11	HL_4V90_033	4V90	0.2073	1	tRNA anticodon loop	AV	tRNA	A	31	U	32	U	33	A	35	A	36	A	37	A	38	U	39	cWW
12	HL_6UFG_007	6UFG	0.1902	1	tRNA anticodon loop	B	tRNA	G	32	C	33	U	34	A	36	U	37	A	38	A	39	C	40	cWW	ncWW
13	HL_7U2I_104	7U2I	0.1743	1		1w	tRNA	C	31	U	32	U	33	C	35	C	36	A	37	A	38	G	39	cWW
14	HL_5IBB_210	5IBB	0.2414	1	tRNA anticodon loop	1L	tRNA	C	31	C	32	U	33	A	35	C	36	A	37	A	38	G	39	cWW	ncWW
15	HL_4V9I_039	4V9I	0.2670	1	tRNA anticodon loop	AY	tRNA	U	31	C	32	U	33	G	35	A	36	A	37	A	38	A	39	cWW
16	HL_6ORD_036	6ORD	0.2388	1	tRNA anticodon loop	QY	tRNA	C	31	U	32	U	33	G	35	C	36	A	37	A	38	G	39	cWW
17	HL_4R4V_001	4R4V	0.2701	1	Varkud satellite (VS) ribozyme helix 1	A	VS ribozyme RNA	C	626	G	627	U	628	G	630	U	631	C	632	G	633	G	634	cWW	tSH
18	HL_3TUP_002	3TUP	0.3045	1	tRNA anticodon loop	T	tRNA	A	31	C	32	U	33	A	35	A	36	A	37	A	38	U	39	cWW
19	HL_7K98_002	7K98	0.3076	1		C	tRNA	C	32	C	33	U	34	A	36	A	37	A	38	A	39	G	40	cWW	ntSH
20	HL_4YCO_002	4YCO	0.2352	1	tRNA anticodon loop	D	tRNA	A	31	U	32	U	33	A	35	A	36	A	37	A	38	U	39	cWW
21	HL_1U0B_002	1U0B	0.2162	1	tRNA anticodon loop	A	tRNA	A	31	U	32	U	33	C	35	A	36	A	37	A	38	U	39	cWW
22	HL_5T83_002	5T83	0.2108	1	Guanidine riboswitch aptamer P2 hairpin	A	Guanidine-I riboswitch	U	56	U	57	U	58	A	60	C	61	A	62	A	63	A	64	cWW		ntSHa
23	HL_3WFS_002	3WFS	0.3233	1	tRNA anticodon loop	A	tRNA	A	31	C	32	U	33	A	35	A	36	A	37	A	38	U	39	ncWW	ncWW
24	HL_7QR3_001	7QR3	0.2372	1		C	chimpanzee CPEB3 ribozyme	G	19	U	20	U	21	A	23	C	24	G	25	U	26	C	27	cWW		ntSHa
25	HL_7QR4_001	7QR4	0.2565	1		B	RNA CPEB3 ribozyme	G	19	U	20	U	21	A	23	C	24	G	25	U	26	C	27	cWW
26	HL_4V9K_034	4V9K	0.2758	1	tRNA anticodon loop	AW	tRNA	A	31	C	32	U	33	A	35	U	36	A	37	A	38	U	39	cWW	ncWW
27	HL_3MJA_001	3MJA	0.3939	2		B	Domain 3 of the cricket paralysis virus intergenic region IRES RNA	A	6184	U	6185	U	6186	G	6189	U	6190	A	6191	G	6192	U	6193	cWW
28	HL_4V83_139	4V83	0.4504	2		CV	domain 3 of PSIC IGR IRES RNA	A	6160	U	6161	U	6162	G	6165	U	6166	G	6167	G	6168	U	6169	cWW	ncWW
29	HL_7KGA_001	7KGA	0.5063	2		A	Flavivirus DB element	U	22	C	23	A	24	C	27	C	28	U	29	A	30	G	31	cWW	ncWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GCUCAUAAC	4
ACUCCAGAU	2
GCUGAUAAC	2
AUUGAAAAU	2
ACUGAAAAU	2
GUUCACGUC	2
GUUUCGAC	1
ACUUCAAAU	1
ACUGUAGAU	1
CUUCCCAAG	1
CCUUACAAG	1
UCUCGAAAA	1
CUUGGCAAG	1
CGUCGUCGG	1
CCUGAAAAG	1
AUUGCAAAU	1
UUUCACAAA	1
ACUCAUAAU	1
AUUAGGUAGU	1
AUUAAGUGGU	1
UCAAGCCUAG	1

Non-Watson-Crick part of the motif

Sequence	Counts
CUCAUAA	5
CUGAAAA	3
CUCCAGA	2
CUGAUAA	2
UUGAAAA	2
UUCACGU	2
UUUCGA	1
CUUCAAA	1
CUGUAGA	1
UUCCCAA	1
CUUACAA	1
CUCGAAA	1
UUGGCAA	1
GUCGUCG	1
UUGCAAA	1
UUCACAA	1
UUAGGUAG	1
UUAAGUGG	1
CAAGCCUA	1

Release history

Release	3.77	3.78	3.79
Date	2023-12-06	2024-01-03	2024-01-03
Status	New id, > 2 parents	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Motif HL_53597.1 Version HL_53597.1 of this group appears in releases 3.77 to 3.79 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif HL_53597.1 Version HL_53597.1 of this group appears in releases 3.77 to 3.79

Download

Csv

Json