RNA 3D Hub //

Motif IL_01312.13 Version IL_01312.13 of this group appears in releases 3.63 to 3.76

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3break 4 5 61-51-62-32-52-63-43-5
1 IL_7RQB_0677RQB0.85614Intercalated tWH1A LSU rRNAC1990U1991U1993*A1669C1670G1674cWWcWW
2 IL_5J7L_3075J7L0.83774Intercalated tWHDA LSU rRNAC1990U1991U1993*A1669C1670G1674cWWcWW
3 IL_4WF9_0654WF90.85434Intercalated tWHX LSU rRNAC2017U2018U2020*A1713C1714G1718cWWcWW
4 IL_4V9F_0624V9F0.84014Intercalated tWH0 LSU rRNAC2031U2032U2034*A1747U1748G1752cWWcWW
5 IL_7RQB_0257RQB0.83961Intercalated cWW1A LSU rRNAC844G845C846*G931A933G934cWWcWW
6 IL_4J50_0014J500.60610Isolated cWH basepairB+ARNA (19-mer)C13A14G15*C7A8G9cWWcWW
7 IL_4J50_0034J500.60590Isolated cWH basepairA+BRNA (19-mer)C13A14G15*C7A8G9cWWcWW
8 IL_1M5K_0041M5K0.56160Isolated cWH basepairBRNA HAIRPIN RIBOZYMEG72G73G74*C79U80U81ncWWcWW
9 IL_3FOZ_0013FOZ0.58920Isolated cWH basepairDtRNA(Phe)G63A64G65*C49U50U51cWWcWW
10 IL_2H1M_0022H1M0.57640Isolated cWH basepairA+BRNA (16-mer)A5G6U7*A26A27U28cWWncHWcWW
11 IL_2H1M_0032H1M0.58530Isolated cWH basepairB+ARNA (16-mer)A21G22U23*A10A11U12cWWncHWcWW
12 IL_4WZM_0014WZM0.58560Isolated cWH basepairB+CRNA template + RNA primerG906G907C908*G917C918C919cWWncHWcWW
13 IL_7A0S_0927A0S0.62111Other ILX LSU rRNAA2579C2580G2582*C2570G2571U2572cWWcWW
14 IL_2ET8_0032ET80.61411Decoding loop relatedA+BRNA (22-mer)G15A17G18*C29A30C31cWWcWW
15 IL_4V88_4484V880.58300A6 SSU rRNAA1234C1235A1236*U1249U1250U1251cWWcWW
16 IL_3MOJ_0023MOJ0.53760A LSU rRNAA2513U2514C2515*G2569G2570U2571ncWWncWWacWW
17 IL_7A0S_0527A0S0.58021X LSU rRNAG1573A1574G1576*U1447A1448C1449cWWncWwcWW
18 IL_4V88_4754V880.42040A6 SSU rRNAG1715C1716G1717*U1684G1685C1686cWWncWWcWW
19 IL_4V88_4574V880.55022Isolated non-canonical cWW pairA6 SSU rRNAG1352U1353G1354*U1369U1372C1373cWWcwWcWW
20 IL_1WNE_0011WNE0.58160C+BRNA (5-mer)G917C918C919*G906G907C908cWWcWW
21 IL_5UNE_0065UNE0.41860Isolated non-canonical cWW pairA+BRNA (47-MER)C27A28G29*U16A17G18cWWcwWcWW
22 IL_5VSU_0025VSU0.41730I U6 snRNAC66C67C68*G78A79G81cWWcWWacWW
23 IL_1NBS_0061NBS0.47240B RNase P class BG125G126C127*G116U117C118cWWncWWcWW
24 IL_4V88_4704V880.34620Isolated non-canonical cWW pairA6 SSU rRNAU1665U1666A1667*U1734U1735G1736cWWcWW
25 IL_7A0S_1077A0S0.35860Isolated non-canonical cWW pairY 5S rRNAU82C83G84*C97C98G99cWWncBWcWW
26 IL_3GLP_0013GLP0.28530A+BRNA (8-mer)C2U3G4*C5||AU6G7cWWcWW
27 IL_4WF9_0184WF90.39340Isolated non-canonical cWW pairX LSU rRNAU705U706G707*U638U639G640cWWcWW
28 IL_4KYY_0024KYY0.39920Isolated non-canonical cWW pairB+ARNA 17-merU8U9G10*U8U9G10cWWcWW
29 IL_5M0H_0025M0H0.38422Multiple bulged bases, near cWWAASH1 E3 (42 nt-TL/TLR)G8U11C12*G34A35C36ncWWcWWcWW
30 IL_4V88_4554V880.33591Isolated non-canonical cWW pairA6 SSU rRNAC1339A1341C1342*G1383A1384G1385cWWncwWcWW
31 IL_5J7L_0085J7L0.32641Single bulged G, near cWWAA SSU rRNAU92U93C95*G75G76A77cWWncWWancWW
32 IL_4V9K_0644V9K0.30610Isolated non-canonical cWW pairAW tRNAC50A51G52*C62C63G64cWWncWWacWW
33 IL_4J50_0024J500.33970Isolated non-canonical cWW pairB+ARNA (19-mer)C10A11G12*C10A11G12cWWcWW
34 IL_4V88_4194V880.34080Isolated non-canonical cWW pairA6 SSU rRNAC646G647G648*C686G687G688cWWcWW
35 IL_5UNE_0015UNE0.22350Isolated non-canonical cWW contactB+ARNA (47-MER)U39G40G41*U7G8A9cWWncWwcWW
36 IL_7RQB_0347RQB0.21290Isolated non-canonical cWW pair (H)1A LSU rRNAG952A953G954*U963C964C965cWWcWWcWW
37 IL_7A0S_0317A0S0.23990Isolated non-canonical cWW pairX LSU rRNAG963A964G965*U974C975C976cWWcWWcWW
38 IL_353D_001353D0.28050A+BRNA (12-mer)G8U9G10*U15G16C17cWWncWWacWW
39 IL_5J7L_2735J7L0.33630Isolated non-canonical cWW pairDA LSU rRNAA905U906G907*U870U871U872cWWcWwcWW
40 IL_4V88_4334V880.31600Isolated non-canonical cWW pairA6 SSU rRNAU917U918A919*U893U894G895ncWWcWwcWW
41 IL_3ICQ_0033ICQ0.33050ERNA (62-MER)G3G4A5*U68U69C70cWWncWWcWW
42 IL_1L9A_0031L9A0.35610Bsignal recognition particle RNA S domainC123G124G125*C225U226G227cWWncWWcWW
43 IL_7A0S_0427A0S0.34270Isolated non-canonical cWW pairX LSU rRNAC1252C1253G1254*C1218C1219G1220cWWncBWcWW
44 IL_5TBW_0085TBW0.29990Isolated non-canonical cWW pair1 LSU rRNAC125U126G127*C141C142G143cWWcWWcWW
45 IL_4V9F_0234V9F0.27620Isolated non-canonical cWW pair0 LSU rRNAC899U900G901*C763C764G765cWWcWWcWW
46 IL_5TBW_0275TBW0.23630Isolated non-canonical cWW pair1 LSU rRNAC938U939G940*C803C804G805cWWcWWcWW
47 IL_7A0S_0147A0S0.22030Isolated non-canonical cWW pairX LSU rRNAC819U820A821*U685C686G687cWWcWWcWW
48 IL_4WF9_0204WF90.17670Isolated non-canonical cWW pairX LSU rRNAC851U852G853*C717C718G719cWWcWWcWW
49 IL_5J7L_2595J7L0.16510Isolated non-canonical cWW pairDA LSU rRNAC806U807G808*C672C673G674cWWcWWcWW
50 IL_7RQB_0177RQB0.175701A LSU rRNAC806U807G808*C672C673G674cWWcWWcWW
51 IL_3RW6_0043RW60.26650Isolated non-canonical cWW pairHconstitutive transport element(CTE)of Mason-Pfizer monkey virus RNAC33U34G35*C24C25G26cWWcWWcWW
52 IL_5UNE_0095UNE0.19360Isolated non-canonical cWW contactA+BRNA (47-MER)U39G40G41*U7G8A9cWWncWW
53 IL_3SZX_0023SZX0.13000Isolated non-canonical cWW pairA+BRNA (19-mer)C10U11G12*C10U11G12cWWncWwcWW
54 IL_4JGN_0024JGN0.09590Isolated non-canonical cWW pairERNA (20-mer)C514||||4_555U515||||4_555G516||||4_555*C508U509G510cWWncWwcWW
55 IL_4JGN_0044JGN0.09590Isolated non-canonical cWW pairERNA (20-mer)C514U515G516*C508||||4_555U509||||4_555G510||||4_555cWWncWwcWW
56 IL_4KNQ_0044KNQ0.00000Isolated non-canonical cWW pairBRNA (20-mer)C213C214G215*C207||||4_555C208||||4_555G209||||4_555cWWcWW
57 IL_4KNQ_0024KNQ0.00000Isolated non-canonical cWW pairBRNA (20-mer)C213||||4_555C214||||4_555G215||||4_555*C207C208G209cWWcWW
58 IL_4E48_0064E480.08730Isolated non-canonical cWW pairA+BRNA (20-mer)C17U18G19*C22U23G24cWWncWwcWW
59 IL_3GM7_0033GM70.14110Isolated non-canonical cWW pairG+HRNA (18-mer)C7U8G9*C10U11G12cWWncWwcWW
60 IL_1UN6_0051UN60.16090Isolated non-canonical cWW pairF5S RIBOSOMAL RNAC95U96G97*C79U80G81cWWncWwcWW
61 IL_4E48_0044E480.18710Isolated non-canonical cWW pairA+BRNA (20-mer)C11U12G13*C28U29G30cWWncWwcWW
62 IL_4E48_0024E480.19980Isolated non-canonical cWW pairA+BRNA (20-mer)C5U6G7*C34U35G36cWWcWW
63 IL_4E48_0014E480.19600Isolated non-canonical cWW pairB+ARNA (20-mer)C37U38G39*C2U3G4cWWcWW
64 IL_3SZX_0013SZX0.17050Isolated non-canonical cWW pairB+ARNA (19-mer)C13U14G15*C7U8G9cWWcWW
65 IL_3GM7_0043GM70.17240Isolated non-canonical cWW pairH+GRNA (18-mer)C7U8G9*C10U11G12cWWncWwcWW
66 IL_3GM7_0023GM70.17110Isolated non-canonical cWW pairH+GRNA (18-mer)C13U14G15*C4U5G6cWWcWW
67 IL_4E59_0014E590.15460Isolated non-canonical cWW pairA+BRNA duplex containing CCG repeatsC2C3G4*C2C3G4cWWncBWcWW
68 IL_4E48_0054E480.24980Isolated non-canonical cWW pairB+ARNA (20-mer)C25U26G27*C14U15G16cWWcWW
69 IL_5MWI_0035MWI0.23630Isolated non-canonical cWW pairARNA G(CUG)8C duplexC8U9G10*C17||||4_555U18||||4_555G19||||4_555cWWcWW
70 IL_5MWI_0065MWI0.23630Isolated non-canonical cWW pairARNA G(CUG)8C duplexC8||||4_555U9||||4_555G10||||4_555*C17U18G19cWWcWW
71 IL_4E48_0034E480.21630Isolated non-canonical cWW pairB+ARNA (20-mer)C31U32G33*C8U9G10cWWcWW
72 IL_1RPU_0011RPU0.26420Isolated non-canonical cWW pairD+CRNA (21-mer)U9||AC10||AA11||A*U9||AC10||AA11||AcWWncBWcWW
73 IL_3GLP_0023GLP0.22830A+BRNA (8-mer)C5U6G7*C2||AU3||AG4ncWwcWW
74 IL_4WF9_0554WF90.29200X LSU rRNAG1465G1466G1467*C1622U1623C1624cWWcWW
75 IL_4Y1M_0054Y1M0.21180Isolated non-canonical cWW pairBE. coli yybP-ykoY riboswitchA103U104A105*U4U5U6cWWncWwcWW
76 IL_7A0S_0117A0S0.24250Isolated non-canonical cWW pairX LSU rRNAA584U585G586*C573C574U575cWWcWWcWW
77 IL_5J7L_2575J7L0.22280Isolated non-canonical cWW pairDA LSU rRNAA575U576G577*C564C565U566cWWcWWcWW
78 IL_4WF9_0174WF90.18180Isolated non-canonical cWW pairX LSU rRNAA618U619G620*C607C608U609cWWcWWcWW
79 IL_7RQB_0157RQB0.193301A LSU rRNAA575U576G577*C564C565U566cWWcWWcWW
80 IL_6E7L_0016E7L0.19950Isolated non-canonical cWW pairARNA (22-mer)C17||||7_375U18||||7_375G19||||7_375*C4U5G6ncWWcWWcWwcWW
81 IL_6E7L_0036E7L0.19950Isolated non-canonical cWW pairARNA (22-mer)C17U18G19*C4||||7_375U5||||7_375G6||||7_375ncWWcWWcWwcWW
82 IL_5MWI_0085MWI0.21670Isolated non-canonical cWW pairARNA G(CUG)8C duplexC2||||4_555U3||||4_555G4||||4_555*C23U24G25cWWcWwcWW
83 IL_5MWI_0015MWI0.21670Isolated non-canonical cWW pairARNA G(CUG)8C duplexC2U3G4*C23||||4_555U24||||4_555G25||||4_555cWWcWwcWW
84 IL_4PCJ_0014PCJ0.24930Isolated non-canonical cWW pairAtrCUG-3('5)C1U2G3*C33U34G35cWWcWwcWW
85 IL_5VCI_0015VCI0.23290Isolated non-canonical cWW pairA+BRNA (22-mer) + RNA (12-mer)C1U2G3*C10U11G12cWWcWwcWW
86 IL_4V88_3984V880.24130Isolated non-canonical cWW pairA6 SSU rRNAA257C258U259*A206U207U208cWWcWWcWW
87 IL_5B2P_0015B2P0.19030Isolated non-canonical cWW pairBGuide RNAG48U49A50*U24U25C26cWWcWwcWW
88 IL_5TBW_1155TBW0.21150Isolated non-canonical cWW pair1 LSU rRNAA3040U3041U3042*A3012U3013U3014cWWcWwcWW
89 IL_2O3V_0042O3V0.22390Isolated non-canonical cWW pairA+BRNA (23-mer)G19U20C21*G28U29C30cWWcWwcWW
90 IL_3BNT_0013BNT0.30140Isolated non-canonical cWW pairAA site of human mitochondrial ribosomeG18||||4_665U19||||4_665C20||||4_665*G4U5C6cWWcWwcWW
91 IL_3BNT_0063BNT0.30140Isolated non-canonical cWW pairAA site of human mitochondrial ribosomeG18U19C20*G4||||4_665U5||||4_665C6||||4_665cWWcWwcWW
92 IL_3BNN_0053BNN0.33660Isolated non-canonical cWW pairD+CA site of human ribosomeG17U18C19*G3U4C5cWWcWwcWW
93 IL_3BNR_0123BNR0.31750Isolated non-canonical cWW pairD+CA site of human mitochondrial ribosome, chain threeG3U4C5*G19U20C21cWWcWwcWW
94 IL_4K31_0044K310.34460Isolated non-canonical cWW pairB+CRNA (23-mer)G19U20C21*G5U6C7cWWcWwcWW
95 IL_4K31_0014K310.34320Isolated non-canonical cWW pairC+BRNA (23-mer)G19U20C21*G5U6C7cWWcWwcWW
96 IL_5WTI_0025WTI0.29280Isolated non-canonical cWW pairBRNA (123-MER)G18U19C20*G10U11C12cWWcWwcWW
97 IL_3BNR_0073BNR0.29730Isolated non-canonical cWW pairD+CA site of human mitochondrial ribosome, chain threeG17U18C19*G5U6C7cWWcWwcWW
98 IL_3TD0_0063TD00.28230Isolated non-canonical cWW pairA+BRNA (23-mer)G19U20C21*G28U29C30cWWcWwcWW
99 IL_2OE5_0012OE50.29680Isolated non-canonical cWW pairA+BRNA (16-mer) + RNA (17-mer)G1405U1406C1407*G1494U1495C1496cWWcWwcWW
100 IL_4P3T_0064P3T0.28790Isolated non-canonical cWW pairB+ARNA (23-mer)G28U29C30*G19U20C21cWWcWwcWW
101 IL_2O3Y_0042O3Y0.28210Isolated non-canonical cWW pairA+BRNA (23-mer)G19U20C21*G28U29C30cWWcWwcWW
102 IL_4KYY_0034KYY0.27960Isolated non-canonical cWW pairB+ARNA 17-merG5U6U7*A11U12C13cWWcWwcWW
103 IL_4KYY_0014KYY0.28250Isolated non-canonical cWW pairA+BRNA 17-merG5U6U7*A11U12C13cWWcWwcWW
104 IL_5ZTM_0025ZTM0.23570Isolated non-canonical cWW pairCnon-coding mRNA sequence roX2G157U158U159*A123U124C125cWWcWwcWW
105 IL_4P3U_0064P3U0.29330Isolated non-canonical cWW pairA+BRNA (23-mer)G19U20C21*G28U29C30cWWcWwcWW
106 IL_4P3U_0074P3U0.30550Isolated non-canonical cWW pairC+DRNA (23-mer)G5U6C7*G42U43C44cWWncWwcWW
107 IL_4V88_4174V880.31750Isolated non-canonical cWW pairA6 SSU rRNAA973A974C975*G624C625U626cWWcWWcWW
108 IL_1Z7F_0021Z7F0.32430Isolated non-canonical cWW pairARNA (16-mer)A10A11U12*A5||||6_765C6||||6_765U7||||6_765cWWcWWcWW
109 IL_5Y85_0065Y850.36620Isolated non-canonical cWW pairC+DRNA (18-mer) + DNA/RNA (50-MER)G13A14C15*G4C5C6cWWcWWcWW
110 IL_5Y7M_0075Y7M0.34910Isolated non-canonical cWW pairDRNA (52-MER)G37A38U39*A11C12C13cWWcWWcWW
111 IL_4V88_4464V880.37200Isolated non-canonical cWW pairA6 SSU rRNAG1213U1214C1215*G1448U1449U1450cWWncWwcWW
112 IL_1T0E_0021T0E0.34350Isolated non-canonical cWW pairC+ARNA (17-mer)G14U15C16*G10||AU11C12cWWcWwcWW
113 IL_1ZX7_0041ZX70.34880Isolated non-canonical cWW pairD+CRNA (14-mer)G24U25C26*G10U11C12cWWcWwcWW
114 IL_4P43_0044P430.28070Isolated non-canonical cWW pairB+ARNA (23-mer)G28U29C30*G19U20C21cWWcWwcWW
115 IL_1ZX7_0061ZX70.30070Isolated non-canonical cWW pairF+ERNA (14-mer)G24U25C26*G10U11C12cWWcWwcWW
116 IL_5TBW_0165TBW0.29970Isolated non-canonical cWW pair1 LSU rRNAU429U430U431*A628U629A630cWWcWW
117 IL_5AOX_0015AOX0.35590Isolated non-canonical cWW pairCALU JO CONSENSUS RNAC18A19C20*G9C10G11cWWcWWcWW
118 IL_1U9S_0071U9S0.32980Isolated non-canonical cWW pairARIBONUCLEASE PC191A192C193*G177C178G179cWWcWWcWW
119 IL_2ET8_0042ET80.34200Isolated non-canonical cWW pairA+BRNA (22-mer)G18U19C20*G27U28C29cWWcWwcWW
120 IL_1MZP_0011MZP0.32190Isolated non-canonical cWW pairBfragment of 23S rRNAC50U51U52*A4U5G6cWWcWwcWW
121 IL_3U4M_0013U4M0.26790Isolated non-canonical cWW pairB LSU rRNAC2179U2180U2181*A2108U2109G2110cWWcWwcWW
122 IL_4V9F_0474V9F0.30560Isolated non-canonical cWW pair0 LSU rRNAC1303U1304C1305*G1349U1350G1351cWWcWwcWW
123 IL_5TBW_1225TBW0.31350Isolated non-canonical cWW pair1 LSU rRNAU3280U3281U3282*A3168U3169A3170cWWcWwcWW
124 IL_5TBW_0345TBW0.26290Isolated non-canonical cWW pair1 LSU rRNAU954U955U956*A965U966A967cWWcWwcWW
125 IL_1U6B_0051U6B0.26520Isolated non-canonical cWW pairB197-MERC100U101U102*A117U118G119cWWcWwcWW
126 IL_3GM7_0013GM70.22070Isolated non-canonical cWW pairG+HRNA (18-mer)C1U2G3*C16U17G18cWWcWW
127 IL_3SZX_0033SZX0.21790Isolated non-canonical cWW pairB+ARNA (19-mer)C7U8G9*C13U14G15cWWncWwcWW
128 IL_4TS2_0044TS20.19930Isolated non-canonical cWW pairX+YSpinach aptamer RNA, bimolecular constructG20U21G22*C77U78C79cWWcWwcWW
129 IL_4P3T_0054P3T0.18281Isolated non-canonical cWW pairA+BRNA (23-mer)G16A18G19*C30C31C32cWWcWWcWW
130 IL_6IA2_0046IA20.24060Isolated non-canonical cWW pairA+BRNA (19-mer)G11A12G13*C7C8C9cWWcWWcWW
131 IL_5ED2_0045ED20.24720Isolated non-canonical cWW pairE+FRNA (23-mer)G14A15G16*C8C9C10cWWcWWcWW
132 IL_6IA2_0026IA20.20100Isolated non-canonical cWW pairB+ARNA (19-mer)G11||AA12G13*C7C8C9cWWcWWcWW
133 IL_6IA2_0056IA20.20490Isolated non-canonical cWW pairB+ARNA (19-mer)G2A3G4*C16C17C18cWWcWWcWW
134 IL_4LFB_0614LFB0.19330Isolated non-canonical cWW pairA SSU rRNAG1474G1475G1476*C1424U1425C1426cWWncWWcWW
135 IL_1KFO_0021KFO0.25640Isolated non-canonical cWW pairARNA (19-mer)G11||||8_555A12||||8_555G13||||8_555*C6C7U8cWWcWWcWW
136 IL_1KFO_0031KFO0.25640Isolated non-canonical cWW pairARNA (19-mer)G11A12G13*C6||||8_555C7||||8_555U8||||8_555cWWcWWcWW
137 IL_6IA2_0016IA20.22060Isolated non-canonical cWW pairA+BRNA (19-mer)G2A3G4*C16C17C18cWWcWWcWW
138 IL_5Z1I_0045Z1I0.25610Isolated non-canonical cWW pairARNA (21-mer)G5||||8_555U6||||8_555C7||||8_555*G19U20C21cWWcWwcWW
139 IL_5Z1I_0015Z1I0.25610Isolated non-canonical cWW pairARNA (21-mer)G5U6C7*G19||||8_555U20||||8_555C21||||8_555cWWcWwcWW
140 IL_5ED1_0025ED10.32080Isolated non-canonical cWW pairB+CRNA (23-mer)G13A14C15*G9A10C11cWWcWwcWW
141 IL_4V88_4674V880.30360Isolated non-canonical cWW pairA6 SSU rRNAU1650A1651C1652*G1748A1749A1750cWWcWwcWW
142 IL_1ZZ5_0021ZZ50.27390Isolated non-canonical cWW pairA+BRNA (15-mer) + RNA (14-mer)G10U11C12*G24U25C26cWWncWwcWW
143 IL_1ZZ5_0041ZZ50.25390Isolated non-canonical cWW pairC+DRNA (15-mer) + RNA (14-mer)G10U11C12*G24U25C26cWWncWwcWW
144 IL_4ZC7_0044ZC70.21830Isolated non-canonical cWW pairA+BRNA duplexG19U20C21*G28U29C30cWWncWwcWW
145 IL_4V88_3854V880.23090Isolated non-canonical cWW pairA6 SSU rRNAU35C36U37*A471U472A473cWWcWWcWW
146 IL_5E81_3765E810.332803L tRNAG27U28U29*A41A42U43ncWWncWWcWW
147 IL_5J7L_0615J7L0.38160Isolated non-canonical cWW pairAA SSU rRNAG1486G1487G1488*C1412A1413U1414cWWcWWcWW
148 IL_4LFB_0594LFB0.38610Isolated non-canonical cWW pairA SSU rRNAG1486G1487G1488*C1412A1413U1414cWWcWWcWW
149 IL_4AOB_0054AOB0.36800Isolated non-canonical cWW pairA SAM-I riboswitchG71A72G73*C78G79U80cWWncWWcWW
150 IL_5TBW_1105TBW0.37540Isolated non-canonical cWW pair1 LSU rRNAG2912C2913G2914*C2889A2890U2891cWWncWWacWW
151 IL_4V84_0714V840.42190AVRNA (34-MER)G6192U6193C6194*G6183A6184U6185ncWWcWWncWWcWW
152 IL_5UNE_0035UNE0.37110Isolated non-canonical cWW pairA+BRNA (47-MER)G12G13C14*G31G32C33cWWcWW
153 IL_5UNE_0075UNE0.45990Isolated non-canonical cWW pairB+ARNA (47-MER)G12G13C14*G31G32C33ncWWcWW
154 IL_4KR9_0024KR90.40070XRNA (39-MER)G28U29C30*G6A7U8cWWcWWcWW
155 IL_4KR9_0014KR90.39970MRNA (39-MER)G28U29C30*G6A7U8cWWcWWcWW
156 IL_5E81_3715E810.31370Self complementary1K tRNAG27U28U29*A41A42U43ncWWcWWcWW
157 IL_5AY2_0035AY20.34170Isolated non-canonical cWW pairA+BRNA (12-mer)A8C9U10*A3C4U5cWWcWW
158 IL_5AY2_0015AY20.33410Isolated non-canonical cWW pairB+ARNA (12-mer)A8C9U10*A3C4U5cWWcWW
159 IL_4P43_0014P430.39300Isolated non-canonical cWW pairA+BRNA (23-mer)G5U6C7*G42U43C44cWWcwWcWW
160 IL_4LFB_0474LFB0.42310Isolated non-canonical cWW pairA SSU rRNAG1061U1062C1063*G1193U1194C1195cWWcwWcWW
161 IL_5J7L_0505J7L0.44280Isolated non-canonical cWW pairAA SSU rRNAG1061U1062C1063*G1193U1194C1195cWWcwWcWW
162 IL_6CZR_1576CZR0.42320Isolated non-canonical cWW pair1a SSU rRNAG1044U1045C1046*G1175U1176C1177cWWncwWcWW
163 IL_1YZ9_0011YZ90.31840Isolated non-canonical cWW pairC+DRNA (11-mer)A4C5U6*A15C16U17cWWncWBcWW
164 IL_1YZ9_0021YZ90.30080Isolated non-canonical cWW pairF+ERNA (11-mer)A15C16U17*A4C5U6cWWncWBcWW
165 IL_5TBW_1125TBW0.35950Isolated non-canonical cWW pair1 LSU rRNAA2926C2927C2928*G2918A2919U2920cWWcWWcWW
166 IL_3MEI_0023MEI0.36050Isolated non-canonical cWW pairB+ARNA (23-mer)G13C14C15*G8C9C10cWWncWBcWW
167 IL_5CCB_0015CCB0.35040Isolated non-canonical cWW pairN tRNAA31C32U33*A37A38U39cWWcWWcWW
168 IL_5TBW_0795TBW0.36680Isolated non-canonical cWW pair1 LSU rRNAG1940C1941U1942*A2106A2107C2108cWWcWWcWW
169 IL_6OL3_0026OL30.33650Isolated non-canonical cWW pairC VA RNAG78C79C80*G53A54C55cWWcWWcWW
170 IL_4NGF_0024NGF0.32500Isolated non-canonical cWW pairG+HRNA (17-mer)G7U8C9*G7U8C9cWWncwWcWW
171 IL_1MFQ_0021MFQ0.31720Isolated non-canonical cWW pairA SRP RNAA228U229C230*G120U121U122cWWcwWcWW
172 IL_3BNN_0083BNN0.32790Isolated non-canonical cWW pairC+DA site of human ribosomeG17U18C19*G3U4C5cWWcwWcWW
173 IL_2O3Y_0012O3Y0.30830Isolated non-canonical cWW pairA+BRNA (23-mer)G5U6C7*G42U43C44cWWcwWcWW
174 IL_2OE8_0012OE80.33450Isolated non-canonical cWW pairB+ARNA (17-mer)G1494U1495C1496*G1405U1406C1407cWWcwWcWW
175 IL_4P3T_0014P3T0.27970Isolated non-canonical cWW pairA+BRNA (23-mer)G5U6C7*G42U43C44cWWncwWcWW
176 IL_2O3V_0012O3V0.30260Isolated non-canonical cWW pairA+BRNA (23-mer)G5U6C7*G42U43C44cWWcwWcWW
177 IL_2O3X_0042O3X0.33160Isolated non-canonical cWW pairB+ARNA (23-mer)G28U29C30*G19U20C21cWWcwWcWW
178 IL_3RG5_0023RG50.34850Isolated non-canonical cWW pairBSelenocysteine transfer RNAA5|||BU6G7*C66U67U67|||AcWWcwWcWW
179 IL_4KZD_0034KZD0.34490Isolated non-canonical cWW pairRRNA (84-MER)G17U18G19*C66U67C68cWWcwWcWW
180 IL_4V88_4264V880.36641Isolated non-canonical cWW pairA6 SSU rRNAA850U851C852*G819U821U822cWWcwWcWW
181 IL_4V9F_1054V9F0.21510Isolated non-canonical cWW pair9 5S rRNAC107C108G109*C72A73G74cWWcWWcWW
182 IL_2ZKO_0012ZKO0.24750Isolated non-canonical cWW pairD+CRNA (21-mer)U9U10A11*U9U10A11cWWcWW
183 IL_3GM7_0053GM70.26970Isolated non-canonical cWW pairG+HRNA (18-mer)C13U14G15*C4U5G6cWWcWW
184 IL_5MWI_0045MWI0.29120Isolated non-canonical cWW pairARNA G(CUG)8C duplexC14||||4_555U15||A||4_555G16||||4_555*C11U12||AG13cWWcWW
185 IL_5MWI_0055MWI0.29120Isolated non-canonical cWW pairARNA G(CUG)8C duplexC14U15||AG16*C11||||4_555U12||A||4_555G13||||4_555cWWcWW
186 IL_5MWI_0075MWI0.24800Isolated non-canonical cWW pairARNA G(CUG)8C duplexC20U21G22*C5||||4_555U6||||4_555G7||||4_555cWWcWW
187 IL_5MWI_0025MWI0.24800Isolated non-canonical cWW pairARNA G(CUG)8C duplexC20||||4_555U21||||4_555G22||||4_555*C5U6G7cWWcWW
188 IL_5VCI_0025VCI0.20310Isolated non-canonical cWW pairB+ARNA (12-mer)C7U8G9*C4U5G6cWWncwWcWW
189 IL_3GM7_0063GM70.22230Isolated non-canonical cWW pairG+HRNA (18-mer)C16U17G18*C1U2G3cWWncwWcWW
190 IL_4JGN_0054JGN0.22690Isolated non-canonical cWW pairERNA (20-mer)C517U518G519*C505||||4_555U506||||4_555G507||||4_555cWWcwWcWW
191 IL_4JGN_0014JGN0.22690Isolated non-canonical cWW pairERNA (20-mer)C517||||4_555U518||||4_555G519||||4_555*C505U506G507cWWcwWcWW
192 IL_4KNQ_0054KNQ0.20720Isolated non-canonical cWW pairBRNA (20-mer)C216C217G218*C204||||4_555C205||||4_555G206||||4_555cWWcWwcWW
193 IL_4KNQ_0014KNQ0.20720Isolated non-canonical cWW pairBRNA (20-mer)C216||||4_555C217||||4_555G218||||4_555*C204C205G206cWWcWwcWW
194 IL_1ZH5_0011ZH50.20640Isolated non-canonical cWW pairC+DRNA (9-mer)C3U4G5*C3U4G5cWWncwWcWW
195 IL_4V83_2354V830.25150Isolated non-canonical cWW pairCVdomain 3 of PSIC IGR IRES RNAG6173U6174G6175*C6153U6154C6155cWWncwWcWW
196 IL_4YHW_0014YHW0.23660Isolated non-canonical cWW pairC+EU4 snRNA fragment + U6 snRNA fragmentA11C12G13*C68C69U70cWWcWW
197 IL_4WF9_0424WF90.28380Isolated non-canonical cWW pairX LSU rRNAG1081C1082G1083*C1160A1161C1162cWWncWWcWW
198 IL_7A0S_0267A0S0.30250Isolated non-canonical cWW pairX LSU rRNAA936C937G938*C864A865U866cWWcWWcWW
199 IL_4P3U_0124P3U0.31160Isolated non-canonical cWW pairC+DRNA (23-mer)G19U20C21*G28U29C30cWWncwWcWW
200 IL_2ZNI_0012ZNI0.25470Cbacterial tRNAU39U40C41*G29G30A31cWWncWWacWW
201 IL_4ZC7_0014ZC70.22230Isolated non-canonical cWW pairB+ARNA duplexG42U43C44*G5U6C7cWWncWwcWW
202 IL_3LA5_0013LA50.23820APurine riboswitchU16U17C18*G78G79A80cWWncWWcWW
203 IL_3TD0_0013TD00.20260Isolated non-canonical cWW pairA+BRNA (23-mer)G5U6C7*G42U43C44cWWncWwcWW
204 IL_6CZR_1186CZR0.22970Isolated non-canonical cWW pair1a SSU rRNAC94A95G96*C68G69G70cWWncWWcWW
205 IL_4LFB_0104LFB0.24340Isolated non-canonical cWW pairA SSU rRNAG190|||KU190|||LG191*C186C187C188cWWcWWcWW
206 IL_4V9F_0174V9F0.22820Isolated non-canonical cWW pair0 LSU rRNAA597C598G599*C558U559U560cWWcWWcWW
207 IL_5TBW_1275TBW0.27090Isolated non-canonical cWW pair1 LSU rRNAG3252G3253G3254*C3233A3234C3235cWWcWWcWW
208 IL_3DIL_0063DIL0.21270Isolated non-canonical cWW pairARNA (174-MER)G115G116G117*C137A138C139cWWcWWcWW
209 IL_3D0U_0063D0U0.21820Isolated non-canonical cWW pairALysine Riboswitch RNAG112G113G114*C134A135C136cWWcWWcWW
210 IL_5MSF_0015MSF0.22431Isolated non-canonical cWW pairRRNA (18-mer)G3||||P_1G4||||P_1G6||||P_1*C13||||P_1A14||||P_1C15||||P_1cWWcWWcWW
211 IL_5TBW_3785TBW0.27911Isolated non-canonical cWW pairAS 5S rRNAA84G85G87*C94A95U96cWWcWWcWW
212 IL_4LFB_0064LFB0.27190Isolated non-canonical cWW pairA SSU rRNAC99A101G102*C67G68G69cWWcWWcWW
213 IL_5TBW_0425TBW0.28360Isolated non-canonical cWW pair1 LSU rRNAA1009G1010A1011*U1039A1040U1041cWWcWWcWW
214 IL_1N33_0701N330.29920Z+YA-SITE MESSENGER RNA FRAGMENTU1U2U3*G34G35A36cWWncWWacWW
215 IL_2R8S_0012R8S0.28770Isolated non-canonical cWW pairRP4-P6 RNA RIBOZYME DOMAINC208A210C211*G110G111G112cWWcWWcWW
216 IL_4WF9_0834WF90.17480Isolated non-canonical cWW pairX LSU rRNAC2111C2112U2113*A2260A2261G2262cWWncWWacWW
217 IL_5M0H_0015M0H0.33051Other ILAASH1 E3 (42 nt-TL/TLR)A37U38U39*A4A5U7cWWcWW
218 IL_5D0B_0015D0B0.37990Isolated non-canonical cWW pairFRNA (17-mer)A37A38U39*A31C32U33cWWcWWcWW
219 IL_4V88_4654V880.27780Isolated non-canonical cWW pairA6 SSU rRNAG1642U1643C1644*G1757U1758C1759cWWcWW
220 IL_6CZR_1716CZR0.39450Isolated non-canonical cWW pair1a SSU rRNAG1418U1419C1420*G1442C1443C1444cWWncWWcWW
221 IL_4LFB_0634LFB0.36520Isolated non-canonical cWW pairA SSU rRNAG1435U1436C1437*G1464C1465C1466cWWcWWcWW
222 IL_5TBW_0465TBW0.36840Isolated non-canonical cWW pair1 LSU rRNAA1120U1121U1122*A1136C1137U1138cWWcWWcWW
223 IL_4M4O_0024M4O0.31790Isolated non-canonical cWW pairBRNA (59-MER)G12G13C14*G46A47C48cWWcWWcWW
224 IL_5TBW_0685TBW0.37180Isolated non-canonical cWW pair1 LSU rRNAG1661G1662C1663*G1786A1787C1788cWWcWWcWW
225 IL_4V88_4724V880.40760Isolated non-canonical cWW pairA6 SSU rRNAG1672G1673C1674*G1727A1728C1729cWWcWWcWW
226 IL_3IVK_0023IVK0.39850Isolated non-canonical cWW pairMclass I ligase productA102A103C104*G87G88U89cWWcWWcWWncWW
227 IL_3HHN_0043HHN0.36320Isolated non-canonical cWW pairEClass I ligase ribozyme, self-ligation productA102A103C104*G87G88U89cWWcWWcWW
228 IL_7A0S_0207A0S0.34710Isolated non-canonical cWW pairX LSU rRNAG767U768C769*G754C755C756cWWcWWcWW
229 IL_5TBW_0215TBW0.41000Isolated non-canonical cWW pair1 LSU rRNAG792C793U794*G668U669C670cWWcWWcWW
230 IL_4M6D_0114M6D0.33720Isolated non-canonical cWW pairHaptamerG12G13C14*G46A47C48cWWcWWncWW
231 IL_5TBW_0445TBW0.34380Isolated non-canonical cWW pair1 LSU rRNAG1087U1088G1089*C1069U1070U1071cWWncWwcWW
232 IL_4V88_4444V880.28010Isolated non-canonical cWW pairA6 SSU rRNAG1464C1465G1466*C1173C1174U1175cWWncBWcWW
233 IL_4P3U_0014P3U0.28320Isolated non-canonical cWW pairA+BRNA (23-mer)G5U6C7*G42U43C44cWWcWW
234 IL_4M4O_0014M4O0.27750Isolated non-canonical cWW pairBRNA (59-MER)A52C53G54*C6A7U8cWWcWWacWW
235 IL_4ZC7_0024ZC70.45630B+ARNA duplexA39A40G42*C7G8U9cWWncWWcWW
236 IL_1MFQ_0031MFQ0.44290Isolated non-canonical cWW pairA SRP RNAA163G164G165*U132A133U134cWWncWWcWW
237 IL_6CZR_1226CZR0.35540Isolated non-canonical cWW pair1a SSU rRNAG196U197G198*C181C182C183cWWcWWncWW
238 IL_1XJR_0031XJR0.32741Isolated non-canonical cWW pairAs2m RNAG32G34G35*C16A17C18cWWcWWcWW
239 IL_3TD0_0023TD00.36431Isolated non-canonical cWW pairB+ARNA (23-mer)G39A40G42*C7G8C9cWWcWWcWW
240 IL_3TD0_0053TD00.35451Isolated non-canonical cWW pairA+BRNA (23-mer)G16A17G19*C30G31C32cWWcWWcWW
241 IL_5ML7_0105ML70.53861Isolated non-canonical cWW with bulgesB23S ribosomal RNAG2196C2197A2199*U2181A2182C2183cWWcWWcWW
242 IL_3KTW_0023KTW0.59211Isolated non-canonical cWW with bulgesCSRP RNAA177U178C180*G152G153U154cWWncSHcWWncWW
243 IL_4V9F_0974V9F0.65131Isolated non-canonical cWW with bulges0 LSU rRNAG2900C2901C2903*G2855A2856C2857cWWncWWcWW
244 IL_5TBW_1085TBW0.66892Isolated non-canonical cWW with bulges1 LSU rRNAG2943U2944G2947*C2879U2880C2881cWWcwWcWW
245 IL_7A0S_0897A0S0.65092Isolated non-canonical cWW with bulgesX LSU rRNAG2553C2554G2557*C2489U2490C2491cWWcWW
246 IL_7RQB_0977RQB0.62872Isolated non-canonical cWW with bulges1A LSU rRNAG2574C2575G2578*C2510U2511C2512cWWncWWcWW
247 IL_5J7L_3405J7L0.63892Isolated non-canonical cWW with bulgesDA LSU rRNAG2574C2575G2578*C2510U2511C2512cWWncWWcWW
248 IL_4WF9_0954WF90.59872Isolated non-canonical cWW with bulgesX LSU rRNAG2601C2602G2605*C2537U2538C2539cWWncWWcWW
249 IL_4V88_4244V880.41280Isolated non-canonical cWW pairA6 SSU rRNAA799U800G801*U748U749U750cWWcwWcWW
250 IL_5J7L_3265J7L0.39610Isolated non-canonical cWW pairDA LSU rRNAC2232U2233G2234*U2085U2086G2087cWWcwWcWW
251 IL_7RQB_0837RQB0.43320Isolated non-canonical cWW pair (H)1A LSU rRNAC2085U2086G2087*U2232U2233G2234cWWcwWcWW
252 IL_7A0S_0787A0S0.37830Isolated non-canonical cWW pairX LSU rRNAC2068U2069G2070*U2211U2212G2213cWWcwWcWW
253 IL_4V8Q_1884V8Q0.35460BY SsrAC20A21G22*U56U57G58cWWncWWncWW
254 IL_5UNE_0045UNE0.48460Isolated non-canonical cWW pairB+ARNA (47-MER)C27A28G29*U16A17G18cWWcwWcWW
255 IL_5ZTM_0015ZTM0.62420Isolated non-canonical cWW pairCnon-coding mRNA sequence roX2C162C163G164*U118A119G120cWWncWWcWW
256 IL_1Y27_0011Y270.35140Isolated non-canonical cWW pairXPurine riboswitchU25C26G27*C43A44A45cWWcWWcWW
257 IL_4K31_0034K310.46021Isolated non-canonical cWW pairB+CRNA (23-mer)A16A17G19*C7G8U9cWWcWWcWW
258 IL_4K31_0024K310.47781Isolated non-canonical cWW pairC+BRNA (23-mer)A16A17G19*C7G8U9cWWcWWcWW
259 IL_5TBW_0575TBW0.56001Isolated cWS basepair1 LSU rRNAA1428U1430G1431*C1376G1377U1378cWWcSWcWW
260 IL_1U6B_0011U6B0.56801Isolated non-canonical cWW pairB197-MERG19C20G22*C29A30C31cWWncWWcWW
261 IL_4RUM_0014RUM0.53741Isolated non-canonical cWW pairANiCo riboswitchG13A14C16*G88A89C90cWWcwWcWW
262 IL_6CZR_1286CZR0.52631Single bulged G, near cWW1a SSU rRNAC382U383A385*U371G372G373cWWncWWcWW
263 IL_4V88_4064V880.62940Isolated near basepairA6 SSU rRNAC411A412U413*A420A421G422cWWcWW
264 IL_5H1K_0015H1K0.53260Isolated non-canonical cWW pairD+CU4 snRNA (13-mer)G7A8C9*G7A8C9cWWcWW
265 IL_4V9F_0774V9F0.55150Isolated near basepair0 LSU rRNAG2237A2238C2239*G2136A2137C2138cWWncWW
266 IL_4PKD_0014PKD0.58451Isolated non-canonical cWW with bulgesVU1 snRNA stem-loops 1 and 2 (55-MER)G106U107U108*A86U87C89cWWcWwcWW

3D structures

Complete motif including flanking bases
SequenceCounts
GUC*GUC41
CUG*CUG36
CUG*CCG7
CCG*CCG6
GAG*CCC5
AUG*CCU4
ACU*ACU4
GGC*GAC4
GCGAG*CUC4
CAG*CAG3
GUU*AUC3
UUU*AUA3
CUU*AUG3
GUG*CUC3
GAC*GAC3
GUC*GAU3
GGG*CAC3
GUC*GCC3
CUG*UUG3
AGU*AAU2
CAG*UAG2
UUA*UUG2
UUG*UUG2
UGG*UGA2
GAG*UCC2
AUG*UUU2
GGG*CUC2
AAU*ACU2
CAC*GCG2
GAG*CCU2
GUU*AAU2
GGG*CAU2
GGC*GGC2
ACG*CAU2
UUC*GGA2
CAG*CGG2
GUG*CCC2
AAC*GGU2
GAAG*CGC2
AAAG*CGU2
CUGU*ACUCUG1
CUGU*ACUAGG1
CUGU*ACUCGG1
CUGU*AUUCGG1
CGC*GGAG1
GGG*CUU1
GAG*CUU1
GGC*GCC1
ACAG*CGU1
GAAG*CAC1
ACA*UUU1
AUC*GGU1
GACG*UAC1
GCG*UGC1
GUG*UUAUC1
GCC*GGC1
CCC*GAG1
GGC*GUC1
UCG*CCG1
GAAUC*GAC1
CUAC*GAG1
UUGC*GGA1
CAG*CCG1
CGG*CGG1
GUG*UGC1
GGA*UUC1
CGG*CUG1
CUA*UCG1
UCA*UCA1
AUA*UUU1
ACU*AUU1
GUA*UUC1
AUU*AUU1
AAC*GCU1
GAC*GCC1
GAU*ACC1
GUC*GUU1
CUC*GUG1
GAAG*CCC1
UAC*GAA1
UCU*AUA1
GAG*CGU1
GCG*CAU1
ACC*GAU1
GCC*GCC1
ACU*AAU1
GCU*AAC1
GCC*GAC1
AUC*GUU1
AUG*CUU1
AUC*GUUU1
CCG*CAG1
UUA*UUA1
ACG*CCU1
GCG*CAC1
ACG*CUU1
GGAG*CAC1
AGUG*CAU1
AGA*UAU1
UUU*GGA1
CAC*GGG1
CCU*AAG1
AUU*AACU1
AUU*ACU1
GCU*GUC1
GUG*CUU1
GCG*CCU1
AAG*CGU1
AGG*UAU1
GAGG*CAC1
GCCA*UAC1
AUUC*GGU1
GCAC*GAC1
GUGAG*CUC1
CAG*UUG1
CCG*UAG1
UCG*CAA1
AGUG*CGU1
GCCG*CAC1
GAGC*GAC1
CUGA*UGG1
CAU*AAG1
GUU*AUAC1
Non-Watson-Crick part of the motif
SequenceCounts
U*U107
U*C18
A*C17
C*C15
G*A13
C*A13
A*A10
A*G7
G*U6
C*U5
U*G5
G*G5
U*A5
AA*G4
CGA*U4
A*U2
C*G2
UG*G2
AG*A2
CC*A2
UG*CUCU1
UG*CUAG1
UG*CUCG1
UG*UUCG1
G*GA1
G*C1
CA*G1
AA*A1
AC*A1
U*UAU1
AAU*A1
UA*A1
AA*C1
U*UU1
GA*A1
GU*A1
U*AC1
UU*G1
CA*A1
UGA*U1
GU*G1
U*UA1

Release history

Release3.633.643.653.663.673.683.693.703.713.723.733.743.753.76
Date2022-11-092022-12-072023-01-042023-02-012023-03-012023-03-292023-04-262023-05-242023-06-212023-07-192023-08-162023-09-132023-10-112023-11-08
StatusUpdated, 1 parentExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Isolated non-canonical cWW pair (207)
  • (24)
  • Isolated non-canonical cWW with bulges (9)
  • Isolated cWH basepair (7)
  • Intercalated tWH (4)
  • Isolated near basepair (2)
  • Single bulged G, near cWW (2)
  • Other IL (2)
  • Isolated non-canonical cWW contact (2)
  • Isolated non-canonical cWW pair (H) (2)
  • Decoding loop related (1)
  • Self complementary (1)
  • Multiple bulged bases, near cWW (1)
  • Isolated cWS basepair (1)
  • Intercalated cWW (1)
    • Basepair signature
    cWW-cWW-cWW
    Heat map statistics
    Min 0.00 | Avg 0.45 | Max 1.16
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