IL_24982.8

#S	Loop id	PDB	Disc	Annotation	Chain(s)	Standardized name for chain		1		2		3		4		5	break		6		7		8		9		10	1-10	2-3	2-9	3-8	4-7	5-6	7-8
1	IL_4IOA_012	4IOA	0.9221	AAA cross-strand stack	X	LSU rRNA	U	616	U	617	A	618	A	619	G	620	*	C	629	G	630	G	631	A	632	G	633	cWW				tHS	cWW
2	IL_2QBG_019	2QBG	0.8988		B	23S rRNA	U	606	U	607	A	608	A	609	C	610	*	G	618	G	619	G	620	A	621	G	622	cWW		ntWH		tHS	cWW
3	IL_3DHS_004	3DHS	0.8513	Triple sheared	A	RNase P RNA	C	284	G	285	A	286	A	287	G	288	*	C	297	G	298	G	299	A	300	G	301	cWW	ncSH			tHS	cWW
4	IL_4IOA_026	4IOA	0.5933	5x5 Sarcin-Ricin with intercalated A; G-bulge	X	LSU rRNA	C	927	G	928	A	929	A	930	G	931	*	U	871	G	872	U	873	A	874	G	875	cWW		tSH	tHW		cWW	ncSH
5	IL_2QBG_058	2QBG	0.5355		B	23S rRNA	U	1513	G	1514	A	1515	G	1516	G	1517	*	U	1474	G	1475	U	1476	A	1477	G	1478	cWW		tSH	tHW		cWW
6	IL_2QWY_004	2QWY	0.5796		B	SAM-II riboswitch	A	46	A	47	A	48	A	49	G	50	*	C	16	G	17	U	18	A	19	U	20	cWW		tSH	tHW		cWW
7	IL_1S72_055	1S72	0.2897	tSH-tHW-tHS (H)	0	LSU rRNA	U	1639	C	1640	A	1641	A	1642	C	1643	*	G	1542	G	1543	U	1544	C	1545	G	1546	cWW		tSH	tHW	tHS	cWW
8	IL_2AW7_040	2AW7	0.2337		A	16S ribosomal RNA	C	779	A	780	A	781	A	782	C	783	*	G	799	G	800	U	801	A	802	G	803	cWW		tSH	tHW	tHS	cWW
9	IL_1FJG_033	1FJG	0.2019	tSH-tHW-tHS (H)	A	SSU rRNA	C	779	A	780	A	781	A	782	C	783	*	G	799	G	800	U	801	A	802	G	803	cWW		tSH	tHW	tHS	cWW
10	IL_4BPP_049	4BPP	0.1456		A	18S RRNA	C	968	A	969	A	970	A	971	G	972	*	C	988	G	989	U	990	A	991	G	992	cWW		tSH	tHW	tHS	cWW
11	IL_3U5F_053	3U5F	0.1435		6	18S rRNA	C	990	G	991	A	992	A	993	G	994	*	C	1010	G	1011	U	1012	A	1013	G	1014	cWW		tSH	tHW	tHS	cWW
12	IL_3J7A_029	3J7A	0.0000	tSH-tHW-tHS (H)	A	SSU rRNA	U	1037	C	1038	A	1039	A	1040	G	1041	*	C	634	G	635	U	636	A	637	G	638	cWW		ntSH	tHW	tHS	cWW
13	IL_3U5F_035	3U5F	0.1007		6	18S rRNA	U	968	C	969	A	970	A	971	G	972	*	C	627	G	628	U	629	A	630	G	631	cWW		tSH	tHW	tHS	cWW
14	IL_4BPP_035	4BPP	0.1355		A	18S RRNA	U	946	C	947	A	948	A	949	G	950	*	C	621	G	622	U	623	A	624	G	625	cWW		tSH	tHW	tHS	cWW
15	IL_1FJG_023	1FJG	0.2082	tSH-tHW-tHS (H)	A	SSU rRNA	U	757	G	758	A	759	G	760	G	761	*	U	580	G	581	U	582	A	583	G	584	cWW		tSH	tHW		cWW
16	IL_2AW7_030	2AW7	0.1729		A	16S ribosomal RNA	U	757	C	758	A	759	G	760	G	761	*	C	580	G	581	C	582	A	583	G	584	cWW		tSH	tHW	tHS	cWW
17	IL_4IOA_051	4IOA	0.2561	tSH-tHW-tHS	X	LSU rRNA	U	1370	G	1371	A	1372	G	1373	G	1374	*	C	1383	G	1384	C	1385	A	1386	G	1387	cWW		tSH	tHW	ntHS	cWW	ncSH
18	IL_2QBG_052	2QBG	0.2672		B	23S rRNA	C	1357	G	1358	A	1359	G	1360	G	1361	*	C	1370	G	1371	U	1372	A	1373	G	1374	cWW		tSH	tHW	tHS	cWW
19	IL_1S72_023	1S72	0.2826	tSH-tHW-tHS (H)	0	LSU rRNA	C	719	G	720	A	721	G	722	G	723	*	C	705	G	706	C	707	A	708	G	709	cWW		tSH	tHW	tHS	cWW
20	IL_3J7A_047	3J7A	0.3412	tSH-tHW-tHS (H)	A	SSU rRNA	U	1059	G	1060	A	1061	A	1062	G	1063	*	C	1079	G	1080	U	1081	A	1082	A	1083	cWW		tSH		tHS	cWW
21	IL_4QCN_049	4QCN	0.3525		A	23S Ribosomal RNA	U	1403	G	1404	A	1405	A	1406	G	1407	*	C	1416	G	1417	U	1418	A	1419	G	1420	cWW		tSH	ntWW	tHS	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
UCAAG*CGUAG	3
UGAGG*UGUAG	2
CAAAC*GGUAG	2
UUAAG*CGGAG	1
UUAAC*GGGAG	1
CGAAG*CGGAG	1
CGAAG*UGUAG	1
AAAAG*CGUAU	1
UCAAC*GGUCG	1
CAAAG*CGUAG	1
CGAAG*CGUAG	1
UCAGG*CGCAG	1
UGAGG*CGCAG	1
CGAGG*CGUAG	1
CGAGG*CGCAG	1
UGAAG*CGUAA	1
UGAAG*CGUAG	1

Non-Watson-Crick part of the motif

Sequence	Counts
GAA*GUA	4
AAA*GUA	4
GAG*GUA	3
CAA*GUA	3
UAA*GGA	2
GAG*GCA	2
GAA*GGA	1
CAA*GUC	1
CAG*GCA	1

Release history

Release	1.17
Date	2014-09-04
Status	Updated, 2 parents

Parent motifs

Parent motif	Common motif instances	Only in IL_24982.8	Only in the parent motif
IL_24982.7 Compare	IL_1S72_055, IL_3U5F_053, IL_2QBG_052, IL_2QBG_058, IL_2AW7_040, IL_1FJG_033, IL_3U5F_035, IL_4BPP_035, IL_1FJG_023, IL_1S72_023, IL_4BPP_049, IL_2AW7_030, IL_2QWY_004, IL_4IOA_051, IL_4IOA_026	IL_4IOA_012, IL_3J7A_029, IL_4QCN_049, IL_2QBG_019, IL_3J7A_047, IL_3DHS_004	IL_4CUX_050, IL_4NVV_052
IL_87904.7 Compare	IL_2QBG_019, IL_4IOA_012, IL_3DHS_004	IL_1S72_055, IL_3U5F_053, IL_2QBG_058, IL_4IOA_051, IL_3J7A_029, IL_2AW7_040, IL_1FJG_033, IL_3U5F_035, IL_4BPP_035, IL_2QBG_052, IL_4QCN_049, IL_3J7A_047, IL_1S72_023, IL_4BPP_049, IL_2AW7_030, IL_2QWY_004, IL_1FJG_023, IL_4IOA_026	IL_2AW7_058, IL_4NVV_091, IL_4CUV_035, IL_1S72_083, IL_4A1B_110, IL_4IOA_070, IL_2QWY_001, IL_2QBG_068, IL_1S72_028, IL_1S72_021, IL_4NVV_017, IL_4NVV_023, IL_1VW3_083, IL_3IWN_002, IL_2A64_005, IL_2A64_006, IL_4BPP_090, IL_2QBG_024, IL_4CUV_116, IL_1U6B_002, IL_2QBG_094, IL_4CUV_073, IL_3U5F_091, IL_4IOA_089, IL_4FAW_002, IL_3U5H_112, IL_3U5H_032, IL_3UCZ_001, IL_4A1B_125, IL_3U5H_075, IL_4NVV_075, IL_4CUX_077

Children motifs

Child motif	Common motif instances	Only in IL_24982.8	Only in the child motif
IL_77895.1 Compare	IL_1S72_055, IL_3U5F_053, IL_2QBG_052, IL_2QBG_058, IL_3J7A_029, IL_2AW7_040, IL_1FJG_033, IL_3U5F_035, IL_4BPP_035, IL_4IOA_051, IL_4QCN_049, IL_1S72_023, IL_4BPP_049, IL_2AW7_030, IL_2QWY_004, IL_1FJG_023, IL_4IOA_026	IL_2QBG_019, IL_4IOA_012, IL_3DHS_004, IL_3J7A_047	IL_4W23_033, IL_4CUX_050, IL_3J7A_061
IL_37976.1 Compare	IL_2QBG_019, IL_4IOA_012, IL_3DHS_004, IL_3J7A_047	IL_1S72_055, IL_4IOA_026, IL_3U5F_035, IL_2QWY_004, IL_2QBG_058, IL_3J7A_029, IL_2AW7_040, IL_1FJG_033, IL_1FJG_023, IL_1S72_023, IL_2QBG_052, IL_4BPP_035, IL_4BPP_049, IL_2AW7_030, IL_4QCN_049, IL_4IOA_051, IL_3U5F_053	IL_2AW7_058, IL_4CUV_035, IL_4QCN_092, IL_1S72_083, IL_4A1B_110, IL_4IOA_070, IL_4W23_080, IL_2QWY_001, IL_2QBG_068, IL_1S72_028, IL_1S72_021, IL_1VX6_038, IL_4QCN_021, IL_1VW3_083, IL_4BPP_090, IL_2A64_005, IL_2A64_006, IL_1VX6_113, IL_3IWN_002, IL_2QBG_024, IL_4CUV_116, IL_1U6B_002, IL_2QBG_094, IL_3J7A_080, IL_4CUV_073, IL_4IOA_089, IL_3U5F_091, IL_4W21_097, IL_4W21_140, IL_4FAW_002, IL_3U5H_112, IL_3U5H_032, IL_3UCZ_001, IL_4A1B_125, IL_3U5H_075, IL_4W23_013, IL_4QCN_071, IL_4QCN_015, IL_4CUX_077, IL_1VX6_072

Motif IL_24982.8 Version IL_24982.8 of this group appears in releases 1.17 to 1.17 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_24982.8 Version IL_24982.8 of this group appears in releases 1.17 to 1.17

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