6CHR Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6CHR_001 | 1/A/31:39 | T-loop with 2 stacked bulged bases | geometric HL_5WWT_002 HL_33597.5 | |
| HL_6CHR_018 | 1/A/48:58 | No text annotation | ||
| HL_6CHR_003 | 1/A/87:92 | GNRA | geometric HL_7A0S_068 HL_34789.5 | |
| HL_6CHR_004 | 1/A/125:146 | No text annotation | ||
| HL_6CHR_005 | 1/A/173:178 | GNRA | geometric HL_5DCV_002 HL_34789.5 | |
| HL_6CHR_006 | 1/A/219:227 | No text annotation | ||
| HL_6CHR_007 | 1/A/253:263 | Pseudoknot geometry | geometric HL_4QLM_002 HL_00911.3 | |
| HL_6CHR_008 | 1/A/369:374 | GNRA | geometric HL_7A0S_068 HL_34789.5 | |
| HL_6CHR_009 | 1/A/390:395 | GNRA | geometric HL_4Y1M_004 HL_34789.5 | |
| HL_6CHR_010 | 1/A/447:453 | T-loop with 1 bulged base | geometric HL_8P9A_195 HL_67772.2 | |
| HL_6CHR_011 | 1/A/466:473 | No text annotation | ||
| HL_6CHR_012 | 1/A/481:486 | GNRA | geometric HL_9DID_001 HL_34789.5 | |
| HL_6CHR_013 | 1/A/523:530 | No text annotation | ||
| HL_6CHR_014 | 1/A/563:568 | GNRA | homologous HL_1KXK_001 NA | |
| HL_6CHR_015 | 1/A/600:605 | GNRA | geometric HL_3SUX_002 HL_34789.5 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6CHR_002 | No text annotation | ||
| HL_6CHR_016 | No text annotation | ||
| HL_6CHR_017 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6CHR_001 | 1/A/10:14, 1/A/339:342 | No text annotation | ||
| IL_6CHR_014 | 1/A/75:76, 1/A/103:108 | No text annotation | ||
| IL_6CHR_015 | 1/A/80:82, 1/A/97:99 | Isolated cWH basepair | geometric IL_3SJ2_001 IL_10892.3 | |
| IL_6CHR_004 | 1/A/161:162, 1/A/312:314 | No text annotation | geometric IL_9AXU_125 IL_14190.3 | |
| IL_6CHR_016 | 1/A/164:167, 1/A/306:310 | Receptor of 11-nt loop-receptor motif | geometric IL_6WPI_002 IL_87739.1 | |
| IL_6CHR_006 | 1/A/187:196, 1/A/294:298 | No text annotation | ||
| IL_6CHR_017 | 1/A/244:246, 1/A/270:282 | No text annotation | ||
| IL_6CHR_008 | 1/A/354:356, 1/A/410:412 | Isolated non-canonical cWW pair | geometric IL_8PFQ_003 IL_01003.5 | |
| IL_6CHR_009 | 1/A/429:434, 1/A/491:497 | No text annotation | ||
| IL_6CHR_010 | 1/A/518:521, 1/A/532:536 | Receptor of 11-nt loop-receptor motif | geometric IL_6WPI_002 IL_87739.1 | |
| IL_6CHR_011 | 1/A/558:559, 1/A/572:575 | Multiple bulged bases | homologous IL_1KXK_003 NA | |
| IL_6CHR_018 | 1/A/590:591, 1/A/614:616 | Single bulged A | geometric IL_4LFB_002 IL_14190.3 | |
| IL_6CHR_013 | 1/A/593:597, 1/A/608:612 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_6CHR_002 | No text annotation | ||
| IL_6CHR_003 | Partly complementary | ||
| IL_6CHR_005 | No text annotation | ||
| IL_6CHR_007 | No text annotation | ||
| IL_6CHR_012 | Tandem non-canonical cWW pairs |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_6CHR_003 | 1/A/68:70, 1/A/113:125, 1/A/146:152 | No text annotation | ||
| J3_6CHR_001 | 1/A/170:172, 1/A/179:183, 1/A/302:303 | No text annotation | geometric J3_3IGI_001 J3_14360.1 | |
| J3_6CHR_004 | 1/A/360:363, 1/A/380:383, 1/A/402:406 | No text annotation | ||
| J4_6CHR_001 | 1/A/435:441, 1/A/459:463, 1/A/476:478, 1/A/489:490 | No text annotation | ||
| J5_6CHR_001 | 1/A/26:28, 1/A/42:43, 1/A/63:64, 1/A/156:159, 1/A/316:327 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_6CHR_002 | No text annotation |
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