7AFH Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_7AFH_001 | 1/1/963:972 | No text annotation Not in a motif group | homologous HL_5J7L_021 NA | |
| HL_7AFH_002 | 1/1/1012:1017 | GNRA Not in a motif group | homologous HL_4LFB_022 HL_42097.1 | |
| HL_7AFH_003 | 1/1/1028:1033 | No text annotation Not in a motif group | geometric HL_6SY6_001 HL_03562.2 | |
| HL_7AFH_004 | 1/1/1076:1081 | GNRA Not in a motif group | homologous HL_5J7L_023 HL_42097.1 | |
| HL_7AFH_005 | 1/1/1089:1096 | No text annotation Not in a motif group | homologous HL_5J7L_024 HL_71554.2 | |
| HL_7AFH_006 | 1/1/1134:1140 | No text annotation Not in a motif group | homologous HL_5J7L_025 HL_03562.2 | |
| HL_7AFH_007 | 1/1/1165:1171 | No text annotation Not in a motif group | homologous HL_5J7L_026 HL_90617.2 | |
| HL_7AFH_008 | 1/1/1265:1270 | Other HL Not in a motif group | homologous HL_4LFB_028 HL_42097.1 | |
| HL_7AFH_009 | 1/1/1314:1323 | No text annotation Not in a motif group | homologous HL_4LFB_029 HL_89380.2 | |
| HL_7AFH_010 | 1/1/1356:1366 | No text annotation Not in a motif group | homologous HL_5J7L_029 HL_96366.1 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_7AFH_001 | 1/1/933:936, 1/1/1379:1384 | No text annotation Not in a motif group | geometric IL_6CZR_149 IL_93211.1 | |
| IL_7AFH_002 | 1/1/953:954, 1/1/1226:1228 | Minor groove platform Not in a motif group | homologous IL_5J7L_042 IL_42622.2 | |
| IL_7AFH_003 | 1/1/993:997, 1/1/1044:1045 | Minor groove platform Not in a motif group | geometric IL_5J7L_043 IL_47078.1 | |
| IL_7AFH_004 | 1/1/998:999, 1/1/1041:1043 | Single stack bend Not in a motif group | homologous IL_5J7L_044 IL_76488.2 | |
| IL_7AFH_005 | 1/1/1007:1009, 1/1/1020:1022 | UC cWW Not in a motif group | geometric IL_4V88_385 IL_51629.2 | |
| IL_7AFH_006 | 1/1/1048:1050, 1/1/1208:1209 | Single bulged U Not in a motif group | geometric IL_4LFB_042 IL_83039.13 | |
| IL_7AFH_007 | 1/1/1050:1052, 1/1/1206:1208 | No text annotation Not in a motif group | homologous IL_4LFB_043 NA | |
| IL_7AFH_008 | 1/1/1052:1056, 1/1/1204:1206 | Isolated cWS basepair Not in a motif group | geometric IL_4LFB_044 IL_76319.2 | |
| IL_7AFH_009 | 1/1/1057:1058, 1/1/1199:1203 | Minor groove platform Not in a motif group | homologous IL_5J7L_048 IL_93353.1 | |
| IL_7AFH_010 | 1/1/1060:1061, 1/1/1195:1197 | Single bulged A Not in a motif group | homologous IL_5J7L_049 IL_37497.2 | |
| IL_7AFH_011 | 1/1/1061:1063, 1/1/1193:1195 | No text annotation Not in a motif group | geometric IL_5J7L_050 IL_95997.1 | |
| IL_7AFH_012 | 1/1/1124:1128, 1/1/1144:1149 | No text annotation Not in a motif group | homologous IL_5J7L_051 IL_93211.1 | |
| IL_7AFH_013 | 1/1/1129:1132, 1/1/1142:1143 | Minor groove platform Not in a motif group | homologous IL_5J7L_052 IL_15052.1 | |
| IL_7AFH_014 | 1/1/1158:1161, 1/1/1175:1181 | No text annotation Not in a motif group | homologous IL_5J7L_053 IL_42032.1 | |
| IL_7AFH_015 | 1/1/1247:1253, 1/1/1284:1290 | No text annotation Not in a motif group | homologous IL_5J7L_054 IL_09129.1 | |
| IL_7AFH_016 | 1/1/1255:1258, 1/1/1277:1282 | No text annotation Not in a motif group | homologous IL_5J7L_055 IL_75461.4 | |
| IL_7AFH_017 | 1/1/1259:1263, 1/1/1272:1276 | Triple sheared Not in a motif group | homologous IL_5J7L_056 IL_56467.8 | |
| IL_7AFH_018 | 1/1/1303:1308, 1/1/1329:1334 | No text annotation Not in a motif group | homologous IL_5J7L_057 IL_19954.2 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_7AFH_001 | 1/1/936:940, 1/1/1343:1350, 1/1/1372:1379 | No text annotation Not in a motif group | ||
| J3_7AFH_002 | 1/1/943:946, 1/1/1235:1237, 1/1/1337:1340 | No text annotation Not in a motif group | homologous J3_4LFB_003 NA | |
| J3_7AFH_003 | 1/1/955:962, 1/1/973:984, 1/1/1221:1225 | No text annotation Not in a motif group | ||
| J3_7AFH_004 | 1/1/990:993, 1/1/1045:1047, 1/1/1210:1215 | No text annotation Not in a motif group | homologous J3_5J7L_007 NA | |
| J3_7AFH_005 | 1/1/1003:1006, 1/1/1023:1027, 1/1/1034:1037 | No text annotation Not in a motif group | ||
| J3_7AFH_006 | 1/1/1073:1074, 1/1/1083:1087, 1/1/1098:1102 | No text annotation Not in a motif group | homologous J3_6CZR_024 NA | |
| J3_7AFH_007 | 1/1/1116:1118, 1/1/1155:1158, 1/1/1181:1184 | No text annotation Not in a motif group | ||
| J3_7AFH_008 | 1/1/1237:1241, 1/1/1296:1303, 1/1/1334:1337 | No text annotation Not in a motif group |
Problematic loops
No problematic loops
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