Motif IL_01312.12 Version IL_01312.12 of this group appears in releases 3.62 to 3.62

Download

Csv

Json

Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3	break		4		5		6	1-5	1-6	2-3	2-5	2-6	3-4	3-5
1	IL_4PKD_001	4PKD	0.5845	1	Isolated non-canonical cWW with bulges	V	U1 snRNA stem-loops 1 and 2 (55-MER)	G	106	U	107	U	108	*	A	86	U	87	C	89		cWW		cWw		cWW
2	IL_4V9F_077	4V9F	0.5515	0	Isolated near basepair	0	LSU rRNA	G	2237	A	2238	C	2239	*	G	2136	A	2137	C	2138		cWW				ncWW
3	IL_5H1K_001	5H1K	0.5326	0	Isolated non-canonical cWW pair	D+C	U4 snRNA (13-mer)	G	7	A	8	C	9	*	G	7	A	8	C	9		cWW				cWW
4	IL_4V88_406	4V88	0.6294	0	Isolated near basepair	A6	SSU rRNA	C	411	A	412	U	413	*	A	420	A	421	G	422		cWW				cWW
5	IL_6CZR_128	6CZR	0.5263	1	Single bulged G, near cWW	1a	SSU rRNA	C	382	U	383	A	385	*	U	371	G	372	G	373		cWW		ncWW		cWW
6	IL_4RUM_001	4RUM	0.5374	1	Isolated non-canonical cWW pair	A	NiCo riboswitch RNA	G	13	A	14	C	16	*	G	88	A	89	C	90		cWW		cwW		cWW
7	IL_1U6B_001	1U6B	0.5680	1	Isolated non-canonical cWW pair	B	197-MER	G	19	C	20	G	22	*	C	29	A	30	C	31		cWW		ncWW		cWW
8	IL_5TBW_057	5TBW	0.5600	1	Isolated cWS basepair	1	LSU rRNA	A	1428	U	1430	G	1431	*	C	1376	G	1377	U	1378		cWW		cSW		cWW
9	IL_4K31_002	4K31	0.4778	1	Isolated non-canonical cWW pair	C+B	RNA (23-mer)	A	16	A	17	G	19	*	C	7	G	8	U	9		cWW		cWW		cWW
10	IL_4K31_003	4K31	0.4602	1	Isolated non-canonical cWW pair	B+C	RNA (23-mer)	A	16	A	17	G	19	*	C	7	G	8	U	9		cWW		cWW		cWW
11	IL_1Y27_001	1Y27	0.3514	0	Isolated non-canonical cWW pair	X	Purine riboswitch	U	25	C	26	G	27	*	C	43	A	44	A	45		cWW		cWW		cWW
12	IL_5ZTM_001	5ZTM	0.6242	0	Isolated non-canonical cWW pair	C	non-coding mRNA sequence roX2	C	162	C	163	G	164	*	U	118	A	119	G	120		cWW		ncWW		cWW
13	IL_5UNE_004	5UNE	0.4846	0	Isolated non-canonical cWW pair	B+A	RNA (47-MER)	C	27	A	28	G	29	*	U	16	A	17	G	18		cWW		cwW		cWW
14	IL_4V8Q_188	4V8Q	0.3546	0		BY	SsrA	C	20	A	21	G	22	*	U	56	U	57	G	58		cWW		ncWW		ncWW
15	IL_7A0S_078	7A0S	0.3783	0	Isolated non-canonical cWW pair	X	LSU rRNA	C	2068	U	2069	G	2070	*	U	2211	U	2212	G	2213		cWW		cwW		cWW
16	IL_7RQB_083	7RQB	0.4332	0	Isolated non-canonical cWW pair (H)	1A	LSU rRNA	C	2085	U	2086	G	2087	*	U	2232	U	2233	G	2234		cWW		cwW		cWW
17	IL_5J7L_326	5J7L	0.3961	0	Isolated non-canonical cWW pair	DA	LSU rRNA	C	2232	U	2233	G	2234	*	U	2085	U	2086	G	2087		cWW		cwW		cWW
18	IL_4V88_424	4V88	0.4128	0	Isolated non-canonical cWW pair	A6	SSU rRNA	A	799	U	800	G	801	*	U	748	U	749	U	750		cWW		cwW		cWW
19	IL_4WF9_095	4WF9	0.5987	2	Isolated non-canonical cWW with bulges	X	LSU rRNA	G	2601	C	2602	G	2605	*	C	2537	U	2538	C	2539		cWW		ncWW		cWW
20	IL_5J7L_340	5J7L	0.6389	2	Isolated non-canonical cWW with bulges	DA	LSU rRNA	G	2574	C	2575	G	2578	*	C	2510	U	2511	C	2512		cWW		ncWW		cWW
21	IL_7RQB_097	7RQB	0.6287	2	Isolated non-canonical cWW with bulges	1A	LSU rRNA	G	2574	C	2575	G	2578	*	C	2510	U	2511	C	2512		cWW		ncWW		cWW
22	IL_7A0S_089	7A0S	0.6509	2	Isolated non-canonical cWW with bulges	X	LSU rRNA	G	2553	C	2554	G	2557	*	C	2489	U	2490	C	2491		cWW				cWW
23	IL_5TBW_108	5TBW	0.6689	2	Isolated non-canonical cWW with bulges	1	LSU rRNA	G	2943	U	2944	G	2947	*	C	2879	U	2880	C	2881		cWW		cwW		cWW
24	IL_4V9F_097	4V9F	0.6513	1	Isolated non-canonical cWW with bulges	0	LSU rRNA	G	2900	C	2901	C	2903	*	G	2855	A	2856	C	2857		cWW		ncWW		cWW
25	IL_3KTW_002	3KTW	0.5921	1	Isolated non-canonical cWW with bulges	C	SRP RNA	A	177	U	178	C	180	*	G	152	G	153	U	154		cWW	ncSH	cWW		ncWW
26	IL_5ML7_010	5ML7	0.5386	1	Isolated non-canonical cWW with bulges	B	23S ribosomal RNA	G	2196	C	2197	A	2199	*	U	2181	A	2182	C	2183		cWW		cWW		cWW
27	IL_3TD0_005	3TD0	0.3545	1	Isolated non-canonical cWW pair	A+B	RNA (23-mer)	G	16	A	17	G	19	*	C	30	G	31	C	32		cWW		cWW		cWW
28	IL_3TD0_002	3TD0	0.3643	1	Isolated non-canonical cWW pair	B+A	RNA (23-mer)	G	39	A	40	G	42	*	C	7	G	8	C	9		cWW		cWW		cWW
29	IL_1XJR_003	1XJR	0.3274	1	Isolated non-canonical cWW pair	A	s2m RNA	G	32	G	34	G	35	*	C	16	A	17	C	18		cWW		cWW		cWW
30	IL_6CZR_122	6CZR	0.3554	0	Isolated non-canonical cWW pair	1a	SSU rRNA	G	196	U	197	G	198	*	C	181	C	182	C	183		cWW		cWW		ncWW
31	IL_1MFQ_003	1MFQ	0.4429	0	Isolated non-canonical cWW pair	A	SRP RNA	A	163	G	164	G	165	*	U	132	A	133	U	134		cWW		ncWW		cWW
32	IL_4ZC7_002	4ZC7	0.4563	0		B+A	RNA duplex	A	39	A	40	G	42	*	C	7	G	8	U	9		cWW		ncWW		cWW
33	IL_4AOB_005	4AOB	0.3680	0	Isolated non-canonical cWW pair	A	SAM-I riboswitch	G	71	A	72	G	73	*	C	78	G	79	U	80		cWW		ncWW		cWW
34	IL_5TBW_110	5TBW	0.3754	0	Isolated non-canonical cWW pair	1	LSU rRNA	G	2912	C	2913	G	2914	*	C	2889	A	2890	U	2891		cWW		ncWWa		cWW
35	IL_4LFB_059	4LFB	0.3861	0	Isolated non-canonical cWW pair	A	SSU rRNA	G	1486	G	1487	G	1488	*	C	1412	A	1413	U	1414		cWW		cWW		cWW
36	IL_5J7L_061	5J7L	0.3816	0	Isolated non-canonical cWW pair	AA	SSU rRNA	G	1486	G	1487	G	1488	*	C	1412	A	1413	U	1414		cWW		cWW		cWW
37	IL_5E81_376	5E81	0.3328	0		3L	tRNA	G	27	U	28	U	29	*	A	41	A	42	U	43		ncWW		ncWW		cWW
38	IL_2O3X_004	2O3X	0.3316	0	Isolated non-canonical cWW pair	B+A	RNA (23-mer)	G	28	U	29	C	30	*	G	19	U	20	C	21		cWW		cwW		cWW
39	IL_4P43_001	4P43	0.3930	0	Isolated non-canonical cWW pair	A+B	RNA (23-mer)	G	5	U	6	C	7	*	G	42	U	43	C	44		cWW		cwW		cWW
40	IL_4LFB_047	4LFB	0.4231	0	Isolated non-canonical cWW pair	A	SSU rRNA	G	1061	U	1062	C	1063	*	G	1193	U	1194	C	1195		cWW		cwW		cWW
41	IL_5J7L_050	5J7L	0.4428	0	Isolated non-canonical cWW pair	AA	SSU rRNA	G	1061	U	1062	C	1063	*	G	1193	U	1194	C	1195		cWW		cwW		cWW
42	IL_6CZR_157	6CZR	0.4232	0	Isolated non-canonical cWW pair	1a	SSU rRNA	G	1044	U	1045	C	1046	*	G	1175	U	1176	C	1177		cWW		ncwW		cWW
43	IL_4NGF_002	4NGF	0.3250	0	Isolated non-canonical cWW pair	G+H	RNA (17-mer)	G	7	U	8	C	9	*	G	7	U	8	C	9		cWW		ncwW		cWW
44	IL_1MFQ_002	1MFQ	0.3172	0	Isolated non-canonical cWW pair	A	SRP RNA	A	228	U	229	C	230	*	G	120	U	121	U	122		cWW		cwW		cWW
45	IL_3BNN_008	3BNN	0.3279	0	Isolated non-canonical cWW pair	C+D	A site of human ribosome	G	17	U	18	C	19	*	G	3	U	4	C	5		cWW		cwW		cWW
46	IL_2O3Y_001	2O3Y	0.3083	0	Isolated non-canonical cWW pair	A+B	RNA (23-mer)	G	5	U	6	C	7	*	G	42	U	43	C	44		cWW		cwW		cWW
47	IL_2OE8_001	2OE8	0.3345	0	Isolated non-canonical cWW pair	B+A	RNA (17-mer)	G	1494	U	1495	C	1496	*	G	1405	U	1406	C	1407		cWW		cwW		cWW
48	IL_4P3T_001	4P3T	0.2797	0	Isolated non-canonical cWW pair	A+B	RNA (23-mer)	G	5	U	6	C	7	*	G	42	U	43	C	44		cWW		ncwW		cWW
49	IL_2O3V_001	2O3V	0.3026	0	Isolated non-canonical cWW pair	A+B	RNA (23-mer)	G	5	U	6	C	7	*	G	42	U	43	C	44		cWW		cwW		cWW
50	IL_6OL3_002	6OL3	0.3365	0	Isolated non-canonical cWW pair	C	VA RNA	G	78	C	79	C	80	*	G	53	A	54	C	55		cWW		cWW		cWW
51	IL_5TBW_079	5TBW	0.3668	0	Isolated non-canonical cWW pair	1	LSU rRNA	G	1940	C	1941	U	1942	*	A	2106	A	2107	C	2108		cWW		cWW		cWW
52	IL_5CCB_001	5CCB	0.3504	0	Isolated non-canonical cWW pair	N	tRNA	A	31	C	32	U	33	*	A	37	A	38	U	39		cWW		cWW		cWW
53	IL_3MEI_002	3MEI	0.3605	0	Isolated non-canonical cWW pair	B+A	RNA (23-mer)	G	13	C	14	C	15	*	G	8	C	9	C	10		cWW		ncWB		cWW
54	IL_5TBW_112	5TBW	0.3595	0	Isolated non-canonical cWW pair	1	LSU rRNA	A	2926	C	2927	C	2928	*	G	2918	A	2919	U	2920		cWW		cWW		cWW
55	IL_1YZ9_002	1YZ9	0.3008	0	Isolated non-canonical cWW pair	F+E	RNA (11-mer)	A	15	C	16	U	17	*	A	4	C	5	U	6		cWW		ncWB		cWW
56	IL_1YZ9_001	1YZ9	0.3184	0	Isolated non-canonical cWW pair	C+D	RNA (11-mer)	A	4	C	5	U	6	*	A	15	C	16	U	17		cWW		ncWB		cWW
57	IL_4V88_426	4V88	0.3664	1	Isolated non-canonical cWW pair	A6	SSU rRNA	A	850	U	851	C	852	*	G	819	U	821	U	822		cWW		cwW		cWW
58	IL_4KZD_003	4KZD	0.3449	0	Isolated non-canonical cWW pair	R	RNA (84-MER)	G	17	U	18	G	19	*	C	66	U	67	C	68		cWW		cwW		cWW
59	IL_3RG5_002	3RG5	0.3485	0	Isolated non-canonical cWW pair	B	Selenocysteine transfer RNA	A	5\|\|\|B	U	6	G	7	*	C	66	U	67	U	67\|\|\|A		cWW		cwW		cWW
60	IL_4ZDO_001	4ZDO	0.3067	0	Isolated non-canonical cWW pair (H)	E	Selenocysteine transfer RNA	A	5\|\|A\|C	U	6\|\|A	G	7\|\|A	*	C	65\|\|A	U	66\|\|A	U	67\|\|A\|A		cWW		cwW		cWW
61	IL_4V83_235	4V83	0.2515	0	Isolated non-canonical cWW pair	CV	domain 3 of PSIC IGR IRES RNA	G	6173	U	6174	G	6175	*	C	6153	U	6154	C	6155		cWW		ncwW		cWW
62	IL_4YHW_001	4YHW	0.2366	0	Isolated non-canonical cWW pair	C+E	U4 snRNA fragment + U6 snRNA fragment	A	11	C	12	G	13	*	C	68	C	69	U	70		cWW				cWW
63	IL_4P3U_012	4P3U	0.3116	0	Isolated non-canonical cWW pair	C+D	RNA (23-mer)	G	19	U	20	C	21	*	G	28	U	29	C	30		cWW		ncwW		cWW
64	IL_7A0S_026	7A0S	0.3025	0	Isolated non-canonical cWW pair	X	LSU rRNA	A	936	C	937	G	938	*	C	864	A	865	U	866		cWW		cWW		cWW
65	IL_4WF9_042	4WF9	0.2838	0	Isolated non-canonical cWW pair	X	LSU rRNA	G	1081	C	1082	G	1083	*	C	1160	A	1161	C	1162		cWW		ncWW		cWW
66	IL_5TBW_378	5TBW	0.2791	1	Isolated non-canonical cWW pair	AS	5S rRNA	A	84	G	85	G	87	*	C	94	A	95	U	96		cWW		cWW		cWW
67	IL_5MSF_001	5MSF	0.2243	1	Isolated non-canonical cWW pair	R	RNA (18-mer)	G	3\|\|\|\|P_1	G	4\|\|\|\|P_1	G	6\|\|\|\|P_1	*	C	13\|\|\|\|P_1	A	14\|\|\|\|P_1	C	15\|\|\|\|P_1		cWW		cWW		cWW
68	IL_3D0U_006	3D0U	0.2182	0	Isolated non-canonical cWW pair	A	Lysine Riboswitch RNA	G	112	G	113	G	114	*	C	134	A	135	C	136		cWW		cWW		cWW
69	IL_3DIL_006	3DIL	0.2127	0	Isolated non-canonical cWW pair	A	RNA (174-MER)	G	115	G	116	G	117	*	C	137	A	138	C	139		cWW		cWW		cWW
70	IL_5TBW_127	5TBW	0.2709	0	Isolated non-canonical cWW pair	1	LSU rRNA	G	3252	G	3253	G	3254	*	C	3233	A	3234	C	3235		cWW		cWW		cWW
71	IL_4V9F_017	4V9F	0.2282	0	Isolated non-canonical cWW pair	0	LSU rRNA	A	597	C	598	G	599	*	C	558	U	559	U	560		cWW		cWW		cWW
72	IL_4LFB_010	4LFB	0.2434	0	Isolated non-canonical cWW pair	A	SSU rRNA	G	190\|\|\|K	U	190\|\|\|L	G	191	*	C	186	C	187	C	188		cWW		cWW		cWW
73	IL_6CZR_118	6CZR	0.2297	0	Isolated non-canonical cWW pair	1a	SSU rRNA	C	94	A	95	G	96	*	C	68	G	69	G	70		cWW		ncWW		cWW
74	IL_3TD0_001	3TD0	0.2026	0	Isolated non-canonical cWW pair	A+B	RNA (23-mer)	G	5	U	6	C	7	*	G	42	U	43	C	44		cWW		ncWw		cWW
75	IL_3LA5_001	3LA5	0.2382	0		A	Purine riboswitch	U	16	U	17	C	18	*	G	78	G	79	A	80		cWW		ncWW		cWW
76	IL_4ZC7_001	4ZC7	0.2223	0	Isolated non-canonical cWW pair	B+A	RNA duplex	G	42	U	43	C	44	*	G	5	U	6	C	7		cWW		ncWw		cWW
77	IL_2ZNI_001	2ZNI	0.2547	0		C	bacterial tRNA	U	39	U	40	C	41	*	G	29	G	30	A	31		cWW		ncWWa		cWW
78	IL_4V84_071	4V84	0.4219	0		AV	RNA (34-MER)	G	6192	U	6193	C	6194	*	G	6183	A	6184	U	6185	ncWW	cWW		ncWW		cWW
79	IL_5UNE_003	5UNE	0.3711	0	Isolated non-canonical cWW pair	A+B	RNA (47-MER)	G	12	G	13	C	14	*	G	31	G	32	C	33		cWW				cWW
80	IL_5UNE_007	5UNE	0.4599	0	Isolated non-canonical cWW pair	B+A	RNA (47-MER)	G	12	G	13	C	14	*	G	31	G	32	C	33		ncWW				cWW
81	IL_4KR9_002	4KR9	0.4007	0		X	RNA (39-MER)	G	28	U	29	C	30	*	G	6	A	7	U	8		cWW		cWW		cWW
82	IL_4KR9_001	4KR9	0.3997	0		M	RNA (39-MER)	G	28	U	29	C	30	*	G	6	A	7	U	8		cWW		cWW		cWW
83	IL_5E81_371	5E81	0.3137	0	Self complementary	1K	tRNA	G	27	U	28	U	29	*	A	41	A	42	U	43		ncWW		cWW		cWW
84	IL_5AY2_003	5AY2	0.3417	0	Isolated non-canonical cWW pair	A+B	RNA (12-mer)	A	8	C	9	U	10	*	A	3	C	4	U	5		cWW				cWW
85	IL_5AY2_001	5AY2	0.3341	0	Isolated non-canonical cWW pair	B+A	RNA (12-mer)	A	8	C	9	U	10	*	A	3	C	4	U	5		cWW				cWW
86	IL_5M0H_001	5M0H	0.3305	1	Other IL	A	ASH1 E3 (42 nt-TL/TLR)	A	37	U	38	U	39	*	A	4	A	5	U	7		cWW				cWW
87	IL_5D0B_001	5D0B	0.3799	0	Isolated non-canonical cWW pair	F	RNA (17-mer)	A	37	A	38	U	39	*	A	31	C	32	U	33		cWW		cWW		cWW
88	IL_4V88_465	4V88	0.2778	0	Isolated non-canonical cWW pair	A6	SSU rRNA	G	1642	U	1643	C	1644	*	G	1757	U	1758	C	1759		cWW				cWW
89	IL_6CZR_171	6CZR	0.3945	0	Isolated non-canonical cWW pair	1a	SSU rRNA	G	1418	U	1419	C	1420	*	G	1442	C	1443	C	1444		cWW		ncWW		cWW
90	IL_4LFB_063	4LFB	0.3652	0	Isolated non-canonical cWW pair	A	SSU rRNA	G	1435	U	1436	C	1437	*	G	1464	C	1465	C	1466		cWW		cWW		cWW
91	IL_5TBW_046	5TBW	0.3684	0	Isolated non-canonical cWW pair	1	LSU rRNA	A	1120	U	1121	U	1122	*	A	1136	C	1137	U	1138		cWW		cWW		cWW
92	IL_4M4O_002	4M4O	0.3179	0	Isolated non-canonical cWW pair	B	RNA (59-MER)	G	12	G	13	C	14	*	G	46	A	47	C	48		cWW		cWW		cWW
93	IL_5TBW_068	5TBW	0.3718	0	Isolated non-canonical cWW pair	1	LSU rRNA	G	1661	G	1662	C	1663	*	G	1786	A	1787	C	1788		cWW		cWW		cWW
94	IL_4V88_472	4V88	0.4076	0	Isolated non-canonical cWW pair	A6	SSU rRNA	G	1672	G	1673	C	1674	*	G	1727	A	1728	C	1729		cWW		cWW		cWW
95	IL_3IVK_002	3IVK	0.3985	0	Isolated non-canonical cWW pair	M	class I ligase product	A	102	A	103	C	104	*	G	87	G	88	U	89		cWW		cWW		cWW	ncWW
96	IL_3HHN_004	3HHN	0.3632	0	Isolated non-canonical cWW pair	E	Class I ligase ribozyme, self-ligation product	A	102	A	103	C	104	*	G	87	G	88	U	89		cWW		cWW		cWW
97	IL_7A0S_020	7A0S	0.3471	0	Isolated non-canonical cWW pair	X	LSU rRNA	G	767	U	768	C	769	*	G	754	C	755	C	756		cWW		cWW		cWW
98	IL_5TBW_021	5TBW	0.4100	0	Isolated non-canonical cWW pair	1	LSU rRNA	G	792	C	793	U	794	*	G	668	U	669	C	670		cWW		cWW		cWW
99	IL_4M6D_011	4M6D	0.3372	0	Isolated non-canonical cWW pair	H	aptamer	G	12	G	13	C	14	*	G	46	A	47	C	48		cWW		cWW		ncWW
100	IL_5TBW_044	5TBW	0.3438	0	Isolated non-canonical cWW pair	1	LSU rRNA	G	1087	U	1088	G	1089	*	C	1069	U	1070	U	1071		cWW			ncWw	cWW
101	IL_4V88_444	4V88	0.2801	0	Isolated non-canonical cWW pair	A6	SSU rRNA	G	1464	C	1465	G	1466	*	C	1173	C	1174	U	1175		cWW		ncBW		cWW
102	IL_4M4O_001	4M4O	0.2775	0	Isolated non-canonical cWW pair	B	RNA (59-MER)	A	52	C	53	G	54	*	C	6	A	7	U	8		cWW		cWWa		cWW
103	IL_4P3U_001	4P3U	0.2832	0	Isolated non-canonical cWW pair	A+B	RNA (23-mer)	G	5	U	6	C	7	*	G	42	U	43	C	44		cWW				cWW
104	IL_4WF9_055	4WF9	0.2920	0		X	LSU rRNA	G	1465	G	1466	G	1467	*	C	1622	U	1623	C	1624		cWW				cWW
105	IL_5J7L_008	5J7L	0.3264	1	Single bulged G, near cWW	AA	SSU rRNA	U	92	U	93	C	95	*	G	75	G	76	A	77		cWW		ncWWa		ncWW
106	IL_4V9K_064	4V9K	0.3061	0	Isolated non-canonical cWW pair	AW	tRNA	C	50	A	51	G	52	*	C	62	C	63	G	64		cWW		ncWWa		cWW
107	IL_4J50_002	4J50	0.3397	0	Isolated non-canonical cWW pair	B+A	RNA (19-mer)	C	10	A	11	G	12	*	C	10	A	11	G	12		cWW				cWW
108	IL_4V88_419	4V88	0.3408	0	Isolated non-canonical cWW pair	A6	SSU rRNA	C	646	G	647	G	648	*	C	686	G	687	G	688		cWW				cWW
109	IL_5J7L_273	5J7L	0.3363	0	Isolated non-canonical cWW pair	DA	LSU rRNA	A	905	U	906	G	907	*	U	870	U	871	U	872		cWW		cWw		cWW
110	IL_5UNE_001	5UNE	0.2235	0	Isolated non-canonical cWW contact	B+A	RNA (47-MER)	U	39	G	40	G	41	*	U	7	G	8	A	9		cWW		ncWw		cWW
111	IL_7RQB_034	7RQB	0.2129	0	Isolated non-canonical cWW pair (H)	1A	LSU rRNA	G	952	A	953	G	954	*	U	963	C	964	C	965		cWW		cWW		cWW
112	IL_7A0S_031	7A0S	0.2399	0	Isolated non-canonical cWW pair	X	LSU rRNA	G	963	A	964	G	965	*	U	974	C	975	C	976		cWW		cWW		cWW
113	IL_353D_001	353D	0.2805	0		A+B	RNA (12-mer)	G	8	U	9	G	10	*	U	15	G	16	C	17		cWW		ncWWa		cWW
114	IL_4V9F_105	4V9F	0.2151	0	Isolated non-canonical cWW pair	9	5S rRNA	C	107	C	108	G	109	*	C	72	A	73	G	74		cWW		cWW		cWW
115	IL_2ZKO_001	2ZKO	0.2475	0	Isolated non-canonical cWW pair	D+C	RNA (21-mer)	U	9	U	10	A	11	*	U	9	U	10	A	11		cWW				cWW
116	IL_3GM7_005	3GM7	0.2697	0	Isolated non-canonical cWW pair	G+H	RNA (18-mer)	C	13	U	14	G	15	*	C	4	U	5	G	6		cWW				cWW
117	IL_5MWI_004	5MWI	0.2912	0	Isolated non-canonical cWW pair	A	RNA G(CUG)8C duplex	C	14\|\|\|\|4_555	U	15\|\|A\|\|4_555	G	16\|\|\|\|4_555	*	C	11	U	12\|\|A	G	13		cWW				cWW
118	IL_5MWI_005	5MWI	0.2912	0	Isolated non-canonical cWW pair	A	RNA G(CUG)8C duplex	C	14	U	15\|\|A	G	16	*	C	11\|\|\|\|4_555	U	12\|\|A\|\|4_555	G	13\|\|\|\|4_555		cWW				cWW
119	IL_5MWI_007	5MWI	0.2480	0	Isolated non-canonical cWW pair	A	RNA G(CUG)8C duplex	C	20	U	21	G	22	*	C	5\|\|\|\|4_555	U	6\|\|\|\|4_555	G	7\|\|\|\|4_555		cWW				cWW
120	IL_5MWI_002	5MWI	0.2480	0	Isolated non-canonical cWW pair	A	RNA G(CUG)8C duplex	C	20\|\|\|\|4_555	U	21\|\|\|\|4_555	G	22\|\|\|\|4_555	*	C	5	U	6	G	7		cWW				cWW
121	IL_5VCI_002	5VCI	0.2031	0	Isolated non-canonical cWW pair	B+A	RNA (12-mer)	C	7	U	8	G	9	*	C	4	U	5	G	6		cWW		ncwW		cWW
122	IL_3GM7_006	3GM7	0.2223	0	Isolated non-canonical cWW pair	G+H	RNA (18-mer)	C	16	U	17	G	18	*	C	1	U	2	G	3		cWW		ncwW		cWW
123	IL_4JGN_005	4JGN	0.2269	0	Isolated non-canonical cWW pair	E	RNA (20-mer)	C	517	U	518	G	519	*	C	505\|\|\|\|4_555	U	506\|\|\|\|4_555	G	507\|\|\|\|4_555		cWW		cwW		cWW
124	IL_4JGN_001	4JGN	0.2269	0	Isolated non-canonical cWW pair	E	RNA (20-mer)	C	517\|\|\|\|4_555	U	518\|\|\|\|4_555	G	519\|\|\|\|4_555	*	C	505	U	506	G	507		cWW		cwW		cWW
125	IL_4KNQ_005	4KNQ	0.2072	0	Isolated non-canonical cWW pair	B	RNA (20-mer)	C	216	C	217	G	218	*	C	204\|\|\|\|4_555	C	205\|\|\|\|4_555	G	206\|\|\|\|4_555		cWW		cWw		cWW
126	IL_4KNQ_001	4KNQ	0.2072	0	Isolated non-canonical cWW pair	B	RNA (20-mer)	C	216\|\|\|\|4_555	C	217\|\|\|\|4_555	G	218\|\|\|\|4_555	*	C	204	C	205	G	206		cWW		cWw		cWW
127	IL_1ZH5_001	1ZH5	0.2064	0	Isolated non-canonical cWW pair	C+D	RNA (9-mer)	C	3	U	4	G	5	*	C	3	U	4	G	5		cWW		ncwW		cWW
128	IL_5UNE_009	5UNE	0.1936	0	Isolated non-canonical cWW contact	A+B	RNA (47-MER)	U	39	G	40	G	41	*	U	7	G	8	A	9		cWW				ncWW
129	IL_3SZX_002	3SZX	0.1300	0	Isolated non-canonical cWW pair	A+B	RNA (19-mer)	C	10	U	11	G	12	*	C	10	U	11	G	12		cWW		ncWw		cWW
130	IL_4JGN_002	4JGN	0.0959	0	Isolated non-canonical cWW pair	E	RNA (20-mer)	C	514\|\|\|\|4_555	U	515\|\|\|\|4_555	G	516\|\|\|\|4_555	*	C	508	U	509	G	510		cWW		ncWw		cWW
131	IL_4JGN_004	4JGN	0.0959	0	Isolated non-canonical cWW pair	E	RNA (20-mer)	C	514	U	515	G	516	*	C	508\|\|\|\|4_555	U	509\|\|\|\|4_555	G	510\|\|\|\|4_555		cWW		ncWw		cWW
132	IL_4KNQ_004	4KNQ	0.0000	0	Isolated non-canonical cWW pair	B	RNA (20-mer)	C	213	C	214	G	215	*	C	207\|\|\|\|4_555	C	208\|\|\|\|4_555	G	209\|\|\|\|4_555		cWW				cWW
133	IL_4KNQ_002	4KNQ	0.0000	0	Isolated non-canonical cWW pair	B	RNA (20-mer)	C	213\|\|\|\|4_555	C	214\|\|\|\|4_555	G	215\|\|\|\|4_555	*	C	207	C	208	G	209		cWW				cWW
134	IL_4E48_006	4E48	0.0873	0	Isolated non-canonical cWW pair	A+B	RNA (20-mer)	C	17	U	18	G	19	*	C	22	U	23	G	24		cWW		ncWw		cWW
135	IL_3GM7_003	3GM7	0.1411	0	Isolated non-canonical cWW pair	G+H	RNA (18-mer)	C	7	U	8	G	9	*	C	10	U	11	G	12		cWW		ncWw		cWW
136	IL_1UN6_005	1UN6	0.1609	0	Isolated non-canonical cWW pair	F	5S RIBOSOMAL RNA	C	95	U	96	G	97	*	C	79	U	80	G	81		cWW		ncWw		cWW
137	IL_4E48_004	4E48	0.1871	0	Isolated non-canonical cWW pair	A+B	RNA (20-mer)	C	11	U	12	G	13	*	C	28	U	29	G	30		cWW		ncWw		cWW
138	IL_4E48_002	4E48	0.1998	0	Isolated non-canonical cWW pair	A+B	RNA (20-mer)	C	5	U	6	G	7	*	C	34	U	35	G	36		cWW				cWW
139	IL_4E48_001	4E48	0.1960	0	Isolated non-canonical cWW pair	B+A	RNA (20-mer)	C	37	U	38	G	39	*	C	2	U	3	G	4		cWW				cWW
140	IL_3SZX_001	3SZX	0.1705	0	Isolated non-canonical cWW pair	B+A	RNA (19-mer)	C	13	U	14	G	15	*	C	7	U	8	G	9		cWW				cWW
141	IL_3GM7_004	3GM7	0.1724	0	Isolated non-canonical cWW pair	H+G	RNA (18-mer)	C	7	U	8	G	9	*	C	10	U	11	G	12		cWW		ncWw		cWW
142	IL_3GM7_002	3GM7	0.1711	0	Isolated non-canonical cWW pair	H+G	RNA (18-mer)	C	13	U	14	G	15	*	C	4	U	5	G	6		cWW				cWW
143	IL_4E59_001	4E59	0.1546	0	Isolated non-canonical cWW pair	A+B	RNA duplex containing CCG repeats	C	2	C	3	G	4	*	C	2	C	3	G	4		cWW		ncBW		cWW
144	IL_4E48_005	4E48	0.2498	0	Isolated non-canonical cWW pair	B+A	RNA (20-mer)	C	25	U	26	G	27	*	C	14	U	15	G	16		cWW				cWW
145	IL_5MWI_003	5MWI	0.2363	0	Isolated non-canonical cWW pair	A	RNA G(CUG)8C duplex	C	8	U	9	G	10	*	C	17\|\|\|\|4_555	U	18\|\|\|\|4_555	G	19\|\|\|\|4_555		cWW				cWW
146	IL_5MWI_006	5MWI	0.2363	0	Isolated non-canonical cWW pair	A	RNA G(CUG)8C duplex	C	8\|\|\|\|4_555	U	9\|\|\|\|4_555	G	10\|\|\|\|4_555	*	C	17	U	18	G	19		cWW				cWW
147	IL_4E48_003	4E48	0.2163	0	Isolated non-canonical cWW pair	B+A	RNA (20-mer)	C	31	U	32	G	33	*	C	8	U	9	G	10		cWW				cWW
148	IL_3GLP_002	3GLP	0.2283	0		A+B	RNA (8-mer)	C	5	U	6	G	7	*	C	2\|\|A	U	3\|\|A	G	4				ncWw		cWW
149	IL_1RPU_001	1RPU	0.2642	0	Isolated non-canonical cWW pair	D+C	RNA (21-mer)	U	9\|\|A	C	10\|\|A	A	11\|\|A	*	U	9\|\|A	C	10\|\|A	A	11\|\|A		cWW		ncBW		cWW
150	IL_3RW6_004	3RW6	0.2665	0	Isolated non-canonical cWW pair	H	constitutive transport element(CTE)of Mason-Pfizer monkey virus RNA	C	33	U	34	G	35	*	C	24	C	25	G	26		cWW		cWW		cWW
151	IL_7RQB_017	7RQB	0.1757	0		1A	LSU rRNA	C	806	U	807	G	808	*	C	672	C	673	G	674		cWW		cWW		cWW
152	IL_5J7L_259	5J7L	0.1651	0	Isolated non-canonical cWW pair	DA	LSU rRNA	C	806	U	807	G	808	*	C	672	C	673	G	674		cWW		cWW		cWW
153	IL_4WF9_020	4WF9	0.1767	0	Isolated non-canonical cWW pair	X	LSU rRNA	C	851	U	852	G	853	*	C	717	C	718	G	719		cWW		cWW		cWW
154	IL_7A0S_014	7A0S	0.2203	0	Isolated non-canonical cWW pair	X	LSU rRNA	C	819	U	820	A	821	*	U	685	C	686	G	687		cWW		cWW		cWW
155	IL_5TBW_027	5TBW	0.2363	0	Isolated non-canonical cWW pair	1	LSU rRNA	C	938	U	939	G	940	*	C	803	C	804	G	805		cWW		cWW		cWW
156	IL_4V9F_023	4V9F	0.2762	0	Isolated non-canonical cWW pair	0	LSU rRNA	C	899	U	900	G	901	*	C	763	C	764	G	765		cWW		cWW		cWW
157	IL_5TBW_008	5TBW	0.2999	0	Isolated non-canonical cWW pair	1	LSU rRNA	C	125	U	126	G	127	*	C	141	C	142	G	143		cWW		cWW		cWW
158	IL_7A0S_042	7A0S	0.3427	0	Isolated non-canonical cWW pair	X	LSU rRNA	C	1252	C	1253	G	1254	*	C	1218	C	1219	G	1220		cWW		ncBW		cWW
159	IL_4LFB_006	4LFB	0.2719	0	Isolated non-canonical cWW pair	A	SSU rRNA	C	99	A	101	G	102	*	C	67	G	68	G	69		cWW		cWW		cWW
160	IL_5TBW_042	5TBW	0.2836	0	Isolated non-canonical cWW pair	1	LSU rRNA	A	1009	G	1010	A	1011	*	U	1039	A	1040	U	1041		cWW		cWW		cWW
161	IL_1N33_070	1N33	0.2992	0		Z+Y	A-SITE MESSENGER RNA FRAGMENT	U	1	U	2	U	3	*	G	34	G	35	A	36		cWW		ncWWa		cWW
162	IL_2R8S_001	2R8S	0.2877	0	Isolated non-canonical cWW pair	R	P4-P6 RNA RIBOZYME DOMAIN	C	208	A	210	C	211	*	G	110	G	111	G	112		cWW		cWW		cWW
163	IL_4WF9_083	4WF9	0.1748	0	Isolated non-canonical cWW pair	X	LSU rRNA	C	2111	C	2112	U	2113	*	A	2260	A	2261	G	2262		cWW		ncWWa		cWW
164	IL_4Y1M_005	4Y1M	0.2118	0	Isolated non-canonical cWW pair	B	E. coli yybP-ykoY riboswitch	A	103	U	104	A	105	*	U	4	U	5	U	6		cWW		ncWw		cWW
165	IL_7A0S_011	7A0S	0.2425	0	Isolated non-canonical cWW pair	X	LSU rRNA	A	584	U	585	G	586	*	C	573	C	574	U	575		cWW		cWW		cWW
166	IL_5J7L_257	5J7L	0.2228	0	Isolated non-canonical cWW pair	DA	LSU rRNA	A	575	U	576	G	577	*	C	564	C	565	U	566		cWW		cWW		cWW
167	IL_4WF9_017	4WF9	0.1818	0	Isolated non-canonical cWW pair	X	LSU rRNA	A	618	U	619	G	620	*	C	607	C	608	U	609		cWW		cWW		cWW
168	IL_7RQB_015	7RQB	0.1933	0		1A	LSU rRNA	A	575	U	576	G	577	*	C	564	C	565	U	566		cWW		cWW		cWW
169	IL_6E7L_001	6E7L	0.1995	0	Isolated non-canonical cWW pair	A	RNA (22-mer)	C	17\|\|\|\|7_375	U	18\|\|\|\|7_375	G	19\|\|\|\|7_375	*	C	4	U	5	G	6	ncWW	cWW		cWw		cWW
170	IL_6E7L_003	6E7L	0.1995	0	Isolated non-canonical cWW pair	A	RNA (22-mer)	C	17	U	18	G	19	*	C	4\|\|\|\|7_375	U	5\|\|\|\|7_375	G	6\|\|\|\|7_375	ncWW	cWW		cWw		cWW
171	IL_5MWI_008	5MWI	0.2167	0	Isolated non-canonical cWW pair	A	RNA G(CUG)8C duplex	C	2\|\|\|\|4_555	U	3\|\|\|\|4_555	G	4\|\|\|\|4_555	*	C	23	U	24	G	25		cWW		cWw		cWW
172	IL_5MWI_001	5MWI	0.2167	0	Isolated non-canonical cWW pair	A	RNA G(CUG)8C duplex	C	2	U	3	G	4	*	C	23\|\|\|\|4_555	U	24\|\|\|\|4_555	G	25\|\|\|\|4_555		cWW		cWw		cWW
173	IL_4PCJ_001	4PCJ	0.2493	0	Isolated non-canonical cWW pair	A	trCUG-3('5)	C	1	U	2	G	3	*	C	33	U	34	G	35		cWW		cWw		cWW
174	IL_5VCI_001	5VCI	0.2329	0	Isolated non-canonical cWW pair	A+B	RNA (22-mer) + RNA (12-mer)	C	1	U	2	G	3	*	C	10	U	11	G	12		cWW		cWw		cWW
175	IL_4V88_398	4V88	0.2413	0	Isolated non-canonical cWW pair	A6	SSU rRNA	A	257	C	258	U	259	*	A	206	U	207	U	208		cWW		cWW		cWW
176	IL_4ZC7_004	4ZC7	0.2183	0	Isolated non-canonical cWW pair	A+B	RNA duplex	G	19	U	20	C	21	*	G	28	U	29	C	30		cWW		ncWw		cWW
177	IL_1ZZ5_002	1ZZ5	0.2739	0	Isolated non-canonical cWW pair	A+B	RNA (15-mer) + RNA (14-mer)	G	10	U	11	C	12	*	G	24	U	25	C	26		cWW		ncWw		cWW
178	IL_1ZZ5_004	1ZZ5	0.2539	0	Isolated non-canonical cWW pair	C+D	RNA (15-mer) + RNA (14-mer)	G	10	U	11	C	12	*	G	24	U	25	C	26		cWW		ncWw		cWW
179	IL_4V88_385	4V88	0.2309	0	Isolated non-canonical cWW pair	A6	SSU rRNA	U	35	C	36	U	37	*	A	471	U	472	A	473		cWW		cWW		cWW
180	IL_3SZX_003	3SZX	0.2179	0	Isolated non-canonical cWW pair	B+A	RNA (19-mer)	C	7	U	8	G	9	*	C	13	U	14	G	15		cWW		ncWw		cWW
181	IL_3GM7_001	3GM7	0.2207	0	Isolated non-canonical cWW pair	G+H	RNA (18-mer)	C	1	U	2	G	3	*	C	16	U	17	G	18		cWW				cWW
182	IL_4TS2_004	4TS2	0.1993	0	Isolated non-canonical cWW pair	X+Y	Spinach aptamer RNA, bimolecular construct	G	20	U	21	G	22	*	C	77	U	78	C	79		cWW		cWw		cWW
183	IL_4P3T_005	4P3T	0.1828	1	Isolated non-canonical cWW pair	A+B	RNA (23-mer)	G	16	A	18	G	19	*	C	30	C	31	C	32		cWW		cWW		cWW
184	IL_6IA2_004	6IA2	0.2406	0	Isolated non-canonical cWW pair	A+B	RNA (19-mer)	G	11	A	12	G	13	*	C	7	C	8	C	9		cWW		cWW		cWW
185	IL_5ED2_004	5ED2	0.2472	0	Isolated non-canonical cWW pair	E+F	RNA (23-mer)	G	14	A	15	G	16	*	C	8	C	9	C	10		cWW		cWW		cWW
186	IL_6IA2_002	6IA2	0.2010	0	Isolated non-canonical cWW pair	B+A	RNA (19-mer)	G	11\|\|A	A	12	G	13	*	C	7	C	8	C	9		cWW		cWW		cWW
187	IL_6IA2_005	6IA2	0.2049	0	Isolated non-canonical cWW pair	B+A	RNA (19-mer)	G	2	A	3	G	4	*	C	16	C	17	C	18		cWW		cWW		cWW
188	IL_4LFB_061	4LFB	0.1933	0	Isolated non-canonical cWW pair	A	SSU rRNA	G	1474	G	1475	G	1476	*	C	1424	U	1425	C	1426		cWW		ncWW		cWW
189	IL_1KFO_002	1KFO	0.2564	0	Isolated non-canonical cWW pair	A	RNA (19-mer)	G	11\|\|\|\|8_555	A	12\|\|\|\|8_555	G	13\|\|\|\|8_555	*	C	6	C	7	U	8		cWW		cWW		cWW
190	IL_1KFO_003	1KFO	0.2564	0	Isolated non-canonical cWW pair	A	RNA (19-mer)	G	11	A	12	G	13	*	C	6\|\|\|\|8_555	C	7\|\|\|\|8_555	U	8\|\|\|\|8_555		cWW		cWW		cWW
191	IL_6IA2_001	6IA2	0.2206	0	Isolated non-canonical cWW pair	A+B	RNA (19-mer)	G	2	A	3	G	4	*	C	16	C	17	C	18		cWW		cWW		cWW
192	IL_5Z1I_004	5Z1I	0.2561	0	Isolated non-canonical cWW pair	A	RNA (21-mer)	G	5\|\|\|\|8_555	U	6\|\|\|\|8_555	C	7\|\|\|\|8_555	*	G	19	U	20	C	21		cWW		cWw		cWW
193	IL_5Z1I_001	5Z1I	0.2561	0	Isolated non-canonical cWW pair	A	RNA (21-mer)	G	5	U	6	C	7	*	G	19\|\|\|\|8_555	U	20\|\|\|\|8_555	C	21\|\|\|\|8_555		cWW		cWw		cWW
194	IL_4V88_467	4V88	0.3036	0	Isolated non-canonical cWW pair	A6	SSU rRNA	U	1650	A	1651	C	1652	*	G	1748	A	1749	A	1750		cWW		cWw		cWW
195	IL_5ED1_002	5ED1	0.3208	0	Isolated non-canonical cWW pair	B+C	RNA (23-mer)	G	13	A	14	C	15	*	G	9	A	10	C	11		cWW		cWw		cWW
196	IL_4P43_004	4P43	0.2807	0	Isolated non-canonical cWW pair	B+A	RNA (23-mer)	G	28	U	29	C	30	*	G	19	U	20	C	21		cWW		cWw		cWW
197	IL_4V88_446	4V88	0.3720	0	Isolated non-canonical cWW pair	A6	SSU rRNA	G	1213	U	1214	C	1215	*	G	1448	U	1449	U	1450		cWW		ncWw		cWW
198	IL_1T0E_002	1T0E	0.3435	0	Isolated non-canonical cWW pair	C+A	RNA (17-mer)	G	14	U	15	C	16	*	G	10\|\|A	U	11	C	12		cWW		cWw		cWW
199	IL_1ZX7_004	1ZX7	0.3488	0	Isolated non-canonical cWW pair	D+C	RNA (14-mer)	G	24	U	25	C	26	*	G	10	U	11	C	12		cWW		cWw		cWW
200	IL_1ZX7_006	1ZX7	0.3007	0	Isolated non-canonical cWW pair	F+E	RNA (14-mer)	G	24	U	25	C	26	*	G	10	U	11	C	12		cWW		cWw		cWW
201	IL_5B2P_001	5B2P	0.1903	0	Isolated non-canonical cWW pair	B	Guide RNA	G	48	U	49	A	50	*	U	24	U	25	C	26		cWW		cWw		cWW
202	IL_5TBW_115	5TBW	0.2115	0	Isolated non-canonical cWW pair	1	LSU rRNA	A	3040	U	3041	U	3042	*	A	3012	U	3013	U	3014		cWW		cWw		cWW
203	IL_2O3V_004	2O3V	0.2239	0	Isolated non-canonical cWW pair	A+B	RNA (23-mer)	G	19	U	20	C	21	*	G	28	U	29	C	30		cWW		cWw		cWW
204	IL_3BNT_001	3BNT	0.3014	0	Isolated non-canonical cWW pair	A	A site of human mitochondrial ribosome	G	18\|\|\|\|4_665	U	19\|\|\|\|4_665	C	20\|\|\|\|4_665	*	G	4	U	5	C	6		cWW		cWw		cWW
205	IL_3BNT_006	3BNT	0.3014	0	Isolated non-canonical cWW pair	A	A site of human mitochondrial ribosome	G	18	U	19	C	20	*	G	4\|\|\|\|4_665	U	5\|\|\|\|4_665	C	6\|\|\|\|4_665		cWW		cWw		cWW
206	IL_3BNN_005	3BNN	0.3366	0	Isolated non-canonical cWW pair	D+C	A site of human ribosome	G	17	U	18	C	19	*	G	3	U	4	C	5		cWW		cWw		cWW
207	IL_3BNR_012	3BNR	0.3175	0	Isolated non-canonical cWW pair	D+C	A site of human mitochondrial ribosome, chain three	G	3	U	4	C	5	*	G	19	U	20	C	21		cWW		cWw		cWW
208	IL_4K31_004	4K31	0.3446	0	Isolated non-canonical cWW pair	B+C	RNA (23-mer)	G	19	U	20	C	21	*	G	5	U	6	C	7		cWW		cWw		cWW
209	IL_4K31_001	4K31	0.3432	0	Isolated non-canonical cWW pair	C+B	RNA (23-mer)	G	19	U	20	C	21	*	G	5	U	6	C	7		cWW		cWw		cWW
210	IL_5WTI_002	5WTI	0.2928	0	Isolated non-canonical cWW pair	B	RNA (123-MER)	G	18	U	19	C	20	*	G	10	U	11	C	12		cWW		cWw		cWW
211	IL_3BNR_007	3BNR	0.2973	0	Isolated non-canonical cWW pair	D+C	A site of human mitochondrial ribosome, chain three	G	17	U	18	C	19	*	G	5	U	6	C	7		cWW		cWw		cWW
212	IL_3TD0_006	3TD0	0.2823	0	Isolated non-canonical cWW pair	A+B	RNA (23-mer)	G	19	U	20	C	21	*	G	28	U	29	C	30		cWW		cWw		cWW
213	IL_2OE5_001	2OE5	0.2968	0	Isolated non-canonical cWW pair	A+B	RNA (16-mer) + RNA (17-mer)	G	1405	U	1406	C	1407	*	G	1494	U	1495	C	1496		cWW		cWw		cWW
214	IL_4P3T_006	4P3T	0.2879	0	Isolated non-canonical cWW pair	B+A	RNA (23-mer)	G	28	U	29	C	30	*	G	19	U	20	C	21		cWW		cWw		cWW
215	IL_2O3Y_004	2O3Y	0.2821	0	Isolated non-canonical cWW pair	A+B	RNA (23-mer)	G	19	U	20	C	21	*	G	28	U	29	C	30		cWW		cWw		cWW
216	IL_4KYY_003	4KYY	0.2796	0	Isolated non-canonical cWW pair	B+A	RNA 17-mer	G	5	U	6	U	7	*	A	11	U	12	C	13		cWW		cWw		cWW
217	IL_4KYY_001	4KYY	0.2825	0	Isolated non-canonical cWW pair	A+B	RNA 17-mer	G	5	U	6	U	7	*	A	11	U	12	C	13		cWW		cWw		cWW
218	IL_5ZTM_002	5ZTM	0.2357	0	Isolated non-canonical cWW pair	C	non-coding mRNA sequence roX2	G	157	U	158	U	159	*	A	123	U	124	C	125		cWW		cWw		cWW
219	IL_4P3U_006	4P3U	0.2933	0	Isolated non-canonical cWW pair	A+B	RNA (23-mer)	G	19	U	20	C	21	*	G	28	U	29	C	30		cWW		cWw		cWW
220	IL_4P3U_007	4P3U	0.3055	0	Isolated non-canonical cWW pair	C+D	RNA (23-mer)	G	5	U	6	C	7	*	G	42	U	43	C	44		cWW		ncWw		cWW
221	IL_5Y7M_007	5Y7M	0.3491	0	Isolated non-canonical cWW pair	D	RNA (52-MER)	G	37	A	38	U	39	*	A	11	C	12	C	13		cWW		cWW		cWW
222	IL_5Y85_006	5Y85	0.3662	0	Isolated non-canonical cWW pair	C+D	RNA (18-mer) + DNA/RNA (50-MER)	G	13	A	14	C	15	*	G	4	C	5	C	6		cWW		cWW		cWW
223	IL_4V88_417	4V88	0.3175	0	Isolated non-canonical cWW pair	A6	SSU rRNA	A	973	A	974	C	975	*	G	624	C	625	U	626		cWW		cWW		cWW
224	IL_1Z7F_002	1Z7F	0.3243	0	Isolated non-canonical cWW pair	A	RNA (16-mer)	A	10	A	11	U	12	*	A	5\|\|\|\|6_765	C	6\|\|\|\|6_765	U	7\|\|\|\|6_765		cWW		cWW		cWW
225	IL_1U9S_007	1U9S	0.3298	0	Isolated non-canonical cWW pair	A	RIBONUCLEASE P	C	191	A	192	C	193	*	G	177	C	178	G	179		cWW		cWW		cWW
226	IL_5AOX_001	5AOX	0.3559	0	Isolated non-canonical cWW pair	C	ALU JO CONSENSUS RNA	C	18	A	19	C	20	*	G	9	C	10	G	11		cWW		cWW		cWW
227	IL_5TBW_016	5TBW	0.2997	0	Isolated non-canonical cWW pair	1	LSU rRNA	U	429	U	430	U	431	*	A	628	U	629	A	630		cWW				cWW
228	IL_1U6B_005	1U6B	0.2652	0	Isolated non-canonical cWW pair	B	197-MER	C	100	U	101	U	102	*	A	117	U	118	G	119		cWW		cWw		cWW
229	IL_5TBW_034	5TBW	0.2629	0	Isolated non-canonical cWW pair	1	LSU rRNA	U	954	U	955	U	956	*	A	965	U	966	A	967		cWW		cWw		cWW
230	IL_5TBW_122	5TBW	0.3135	0	Isolated non-canonical cWW pair	1	LSU rRNA	U	3280	U	3281	U	3282	*	A	3168	U	3169	A	3170		cWW		cWw		cWW
231	IL_4V9F_047	4V9F	0.3056	0	Isolated non-canonical cWW pair	0	LSU rRNA	C	1303	U	1304	C	1305	*	G	1349	U	1350	G	1351		cWW		cWw		cWW
232	IL_3U4M_001	3U4M	0.2679	0	Isolated non-canonical cWW pair	B	LSU rRNA	C	2179	U	2180	U	2181	*	A	2108	U	2109	G	2110		cWW		cWw		cWW
233	IL_1MZP_001	1MZP	0.3219	0	Isolated non-canonical cWW pair	B	fragment of 23S rRNA	C	50	U	51	U	52	*	A	4	U	5	G	6		cWW		cWw		cWW
234	IL_2ET8_004	2ET8	0.3420	0	Isolated non-canonical cWW pair	A+B	RNA (22-mer)	G	18	U	19	C	20	*	G	27	U	28	C	29		cWW		cWw		cWW
235	IL_1NBS_006	1NBS	0.4724	0		B	RNase P class B	G	125	G	126	C	127	*	G	116	U	117	C	118		cWW		ncWW		cWW
236	IL_3ICQ_003	3ICQ	0.3305	0		E	RNA (62-MER)	G	3	G	4	A	5	*	U	68	U	69	C	70		cWW		ncWW		cWW
237	IL_4V88_433	4V88	0.3160	0	Isolated non-canonical cWW pair	A6	SSU rRNA	U	917	U	918	A	919	*	U	893	U	894	G	895		ncWW		cWw		cWW
238	IL_1L9A_003	1L9A	0.3561	0		B	signal recognition particle RNA S domain	C	123	G	124	G	125	*	C	225	U	226	G	227		cWW		ncWW		cWW
239	IL_4V88_470	4V88	0.3462	0	Isolated non-canonical cWW pair	A6	SSU rRNA	U	1665	U	1666	A	1667	*	U	1734	U	1735	G	1736		cWW				cWW
240	IL_7A0S_107	7A0S	0.3586	0	Isolated non-canonical cWW pair	Y	5S rRNA	U	82	C	83	G	84	*	C	97	C	98	G	99		cWW		ncBW		cWW
241	IL_3GLP_001	3GLP	0.2853	0		A+B	RNA (8-mer)	C	2	U	3	G	4	*	C	5\|\|A	U	6	G	7		cWW				cWW
242	IL_4WF9_018	4WF9	0.3934	0	Isolated non-canonical cWW pair	X	LSU rRNA	U	705	U	706	G	707	*	U	638	U	639	G	640		cWW				cWW
243	IL_4KYY_002	4KYY	0.3992	0	Isolated non-canonical cWW pair	B+A	RNA 17-mer	U	8	U	9	G	10	*	U	8	U	9	G	10		cWW				cWW
244	IL_5M0H_002	5M0H	0.3842	2	Multiple bulged bases, near cWW	A	ASH1 E3 (42 nt-TL/TLR)	G	8	U	11	C	12	*	G	34	A	35	C	36		ncWW		cWW		cWW
245	IL_4V88_455	4V88	0.3359	1	Isolated non-canonical cWW pair	A6	SSU rRNA	C	1339	A	1341	C	1342	*	G	1383	A	1384	G	1385		cWW		ncwW		cWW
246	IL_5VSU_002	5VSU	0.4173	0		I	U6 snRNA	C	66	C	67	C	68	*	G	78	A	79	G	81		cWW		cWWa		cWW
247	IL_5UNE_006	5UNE	0.4186	0	Isolated non-canonical cWW pair	A+B	RNA (47-MER)	C	27	A	28	G	29	*	U	16	A	17	G	18		cWW		cwW		cWW
248	IL_1WNE_001	1WNE	0.5816	0		C+B	RNA (5-mer)	G	917	C	918	C	919	*	G	906	G	907	C	908		cWW				cWW
249	IL_4V88_457	4V88	0.5502	2	Isolated non-canonical cWW pair	A6	SSU rRNA	G	1352	U	1353	G	1354	*	U	1369	U	1372	C	1373		cWW		cwW		cWW
250	IL_4V88_475	4V88	0.4204	0		A6	SSU rRNA	G	1715	C	1716	G	1717	*	U	1684	G	1685	C	1686		cWW		ncWW		cWW
251	IL_7A0S_052	7A0S	0.5802	1		X	LSU rRNA	G	1573	A	1574	G	1576	*	U	1447	A	1448	C	1449		cWW		ncWw		cWW
252	IL_3MOJ_002	3MOJ	0.5376	0		A	LSU rRNA	A	2513	U	2514	C	2515	*	G	2569	G	2570	U	2571		ncWW		ncWWa		cWW
253	IL_4V88_448	4V88	0.5830	0		A6	SSU rRNA	A	1234	C	1235	A	1236	*	U	1249	U	1250	U	1251		cWW				cWW
254	IL_2ET8_003	2ET8	0.6141	1	Decoding loop related	A+B	RNA (22-mer)	G	15	A	17	G	18	*	C	29	A	30	C	31		cWW				cWW
255	IL_7A0S_092	7A0S	0.6211	1	Other IL	X	LSU rRNA	A	2579	C	2580	G	2582	*	C	2570	G	2571	U	2572		cWW				cWW
256	IL_4WZM_001	4WZM	0.5856	0	Isolated cWH basepair	B+C	RNA template + RNA primer	G	906	G	907	C	908	*	G	917	C	918	C	919		cWW		ncHW		cWW
257	IL_2H1M_003	2H1M	0.5853	0	Isolated cWH basepair	B+A	RNA (16-mer)	A	21	G	22	U	23	*	A	10	A	11	U	12		cWW		ncHW		cWW
258	IL_2H1M_002	2H1M	0.5764	0	Isolated cWH basepair	A+B	RNA (16-mer)	A	5	G	6	U	7	*	A	26	A	27	U	28		cWW		ncHW		cWW
259	IL_3FOZ_001	3FOZ	0.5892	0	Isolated cWH basepair	D	tRNA(Phe)	G	63	A	64	G	65	*	C	49	U	50	U	51		cWW				cWW
260	IL_1M5K_004	1M5K	0.5616	0	Isolated cWH basepair	B	RNA HAIRPIN RIBOZYME	G	72	G	73	G	74	*	C	79	U	80	U	81		ncWW				cWW
261	IL_4J50_003	4J50	0.6059	0	Isolated cWH basepair	A+B	RNA (19-mer)	C	13	A	14	G	15	*	C	7	A	8	G	9		cWW				cWW
262	IL_4J50_001	4J50	0.6061	0	Isolated cWH basepair	B+A	RNA (19-mer)	C	13	A	14	G	15	*	C	7	A	8	G	9		cWW				cWW
263	IL_7RQB_025	7RQB	0.8396	1	Intercalated cWW	1A	LSU rRNA	C	844	G	845	C	846	*	G	931	A	933	G	934		cWW				cWW
264	IL_4V9F_062	4V9F	0.8401	4	Intercalated tWH	0	LSU rRNA	C	2031	U	2032	U	2034	*	A	1747	U	1748	G	1752		cWW				cWW
265	IL_4WF9_065	4WF9	0.8543	4	Intercalated tWH	X	LSU rRNA	C	2017	U	2018	U	2020	*	A	1713	C	1714	G	1718		cWW				cWW
266	IL_5J7L_307	5J7L	0.8377	4	Intercalated tWH	DA	LSU rRNA	C	1990	U	1991	U	1993	*	A	1669	C	1670	G	1674		cWW				cWW
267	IL_7RQB_067	7RQB	0.8561	4	Intercalated tWH	1A	LSU rRNA	C	1990	U	1991	U	1993	*	A	1669	C	1670	G	1674		cWW				cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GUC*GUC	41
CUG*CUG	36
CUG*CCG	7
CCG*CCG	6
GAG*CCC	5
GCGAG*CUC	4
ACU*ACU	4
GGC*GAC	4
AUG*CCU	4
GAC*GAC	3
CUG*UUG	3
GUG*CUC	3
GGG*CAC	3
GUC*GAU	3
GUC*GCC	3
CAG*CAG	3
GUU*AUC	3
UUU*AUA	3
CUU*AUG	3
AAAG*CGU	2
CAG*UAG	2
AUG*UUU	2
GAAG*CGC	2
GUG*CCC	2
GGG*CAU	2
GUU*AAU	2
AUG*CUU	2
ACG*CAU	2
CAG*CGG	2
UUC*GGA	2
GGC*GGC	2
AAU*ACU	2
AAC*GGU	2
GGG*CUC	2
UGG*UGA	2
GAG*UCC	2
GAG*CCU	2
CAC*GCG	2
UUA*UUG	2
UUG*UUG	2
AGU*AAU	2
GUU*AUAC	1
CAU*AAG	1
CUGA*UGG	1
GAGC*GAC	1
GCCG*CAC	1
AGUG*CGU	1
UCG*CAA	1
CCG*UAG	1
CAG*UUG	1
GUGAG*CUC	1
GCAC*GAC	1
AUUC*GGU	1
GCCA*UAC	1
GAGG*CAC	1
AGG*UAU	1
AAG*CGU	1
GAG*CGU	1
GCG*CAU	1
AUC*GUU	1
GCC*GAC	1
GCU*AAC	1
ACU*AAU	1
GCC*GCC	1
ACC*GAU	1
AUC*GUUU	1
ACG*CCU	1
GCG*CAC	1
AGUG*CAU	1
GGAG*CAC	1
ACG*CUU	1
AUU*AACU	1
AUU*ACU	1
GCU*GUC	1
GUG*CUU	1
GCG*CCU	1
UUGC*GGA	1
CAG*CCG	1
CGG*CGG	1
GUG*UGC	1
CCG*CAG	1
UUA*UUA	1
UCA*UCA	1
CUA*UCG	1
AGA*UAU	1
UUU*GGA	1
CAC*GGG	1
CCU*AAG	1
AUA*UUU	1
ACU*AUU	1
UCU*AUA	1
GAAG*CCC	1
UAC*GAA	1
GUC*GUU	1
GUA*UUC	1
AUU*AUU	1
GAU*ACC	1
GAC*GCC	1
AAC*GCU	1
CUC*GUG	1
GGC*GUC	1
GGA*UUC	1
CGG*CUG	1
UCG*CCG	1
GAAUC*GAC	1
CUAC*GAG	1
CCC*GAG	1
GCC*GGC	1
GUG*UUAUC	1
GCG*UGC	1
GACG*UAC	1
AUC*GGU	1
ACA*UUU	1
GAAG*CAC	1
ACAG*CGU	1
GGC*GCC	1
GAG*CUU	1
GGG*CUU	1
CGC*GGAG	1
CUGU*AUUCGG	1
CUGU*ACUCGG	1
CUGU*ACUAGG	1
CUGU*ACUCUG	1

Non-Watson-Crick part of the motif

Sequence	Counts
U*U	108
U*C	18
A*C	17
C*C	15
C*A	13
G*A	13
A*A	10
A*G	7
G*U	6
U*A	5
C*U	5
U*G	5
G*G	5
AA*G	4
CGA*U	4
UG*G	2
AG*A	2
CC*A	2
A*U	2
C*G	2
U*UA	1
GU*G	1
UGA*U	1
CA*A	1
UU*G	1
U*UU	1
GU*A	1
GA*A	1
U*AC	1
AA*C	1
AAU*A	1
UA*A	1
U*UAU	1
AC*A	1
AA*A	1
CA*G	1
G*C	1
G*GA	1
UG*UUCG	1
UG*CUCG	1
UG*CUAG	1
UG*CUCU	1

Release history

Release	3.62
Date	2022-10-12
Status	Updated, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: Isolated non-canonical cWW pair (207)
(24)
Isolated non-canonical cWW with bulges (9)
Isolated cWH basepair (7)
Intercalated tWH (4)
Isolated non-canonical cWW pair (H) (3)
Isolated near basepair (2)
Single bulged G, near cWW (2)
Other IL (2)
Isolated non-canonical cWW contact (2)
Decoding loop related (1)
Self complementary (1)
Multiple bulged bases, near cWW (1)
Isolated cWS basepair (1)
Intercalated cWW (1)
Basepair signature: cWW-cWW-cWW
Heat map statistics: Min 0.00 | Avg 0.45 | Max 1.16

Help

Coloring options: Nucleotide numbers

Motif IL_01312.12 Version IL_01312.12 of this group appears in releases 3.62 to 3.62 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_01312.12 Version IL_01312.12 of this group appears in releases 3.62 to 3.62

Download

Csv

Json