IL_30621.3

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4	break		5		6		7		8	1-8	2-6	2-7	3-6	3-7	4-5
1	IL_4K27_003	4K27	0.6473	0	Tandem non-canonical cWW pairs	U	Myotonic Dystrophy Type 2 RNA	C	41	C	42	U	43	G	44	*	C	12	C	13	U	14	G	15	cWW		cWW	cWW		cWW
2	IL_4K27_002	4K27	0.6354	0	Tandem non-canonical cWW pairs	U	Myotonic Dystrophy Type 2 RNA	C	45	C	46	U	47	G	48	*	C	8	C	9	U	10	G	11	cWW		cWW	cWW		cWW
3	IL_8C3A_018	8C3A	0.5970	0	Tandem non-canonical cWW pairs	1	LSU rRNA	A	445	U	446	U	447	U	448	*	G	481	U	482	U	483	U	484	cWW				ncWS	cWW
4	IL_5EW4_001	5EW4	0.7028	0	Tandem non-canonical cWW pairs	B+A	RNA (22-mer)	C	14	C	15	C	16	G	17	*	C	8	C	9	C	10	G	11	cWW		cWw	cBW		cWW
5	IL_7A0S_040	7A0S	0.6567	0	Tandem non-canonical cWW pairs	X	LSU rRNA	A	1175	U	1176	U	1177	C	1178	*	G	1196	U	1197	C	1198	U	1199	cWW		cWW	ncWw		cWW
6	IL_3TZR_003	3TZR	0.6803	0	Tandem non-canonical cWW pairs	A+B	RNA (20-mer) + RNA (16-mer)	C	62	U	63	U	64	C	65	*	G	102	U	103	C	104	G	105	cWW		cWW	cWw		cWW
7	IL_2PN3_004	2PN3	0.6947	0	Tandem non-canonical cWW pairs	A+B	RNA (24-mer) + RNA (20-mer)	C	62	U	63	U	64	C	65	*	G	102	U	103	C	104	G	105	cWW		cWW	cWw		cWW
8	IL_205D_001	205D	0.7346	0	Tandem non-canonical cWW pairs	A+B	RNA (12-mer)	U	5	U	6	U	7	G	8	*	U	17	U	18	U	19	G	20	cWW		cwW	cWw		cWW
9	IL_4EYA_003	4EYA	0.7308	0	Tandem non-canonical cWW pairs	f+e	RNA (12-mer)	C	6	U	7	U	8	G	9	*	C	6	U	7	U	8	G	9	cWW		cwW	cWw		cWW
10	IL_8C3A_479	8C3A	0.6508	0	Tandem non-canonical cWW pairs	CM	SSU rRNA	G	1710	C	1711	U	1712	G	1713	*	C	1662	U	1663	C	1664	C	1665	cWW		ncWw	cWw		cWW
11	IL_5TBW_128	5TBW	0.6667	0	Tandem non-canonical cWW pairs	1	LSU rRNA	C	3235	U	3236	U	3237	G	3238	*	C	3249	U	3250	U	3251	G	3252	cWW		cwW	cWw		cWW
12	IL_6MWN_005	6MWN	0.6908	0	Tandem non-canonical cWW pairs	B	IRES	A	643	U	644	U	645	G	646	*	C	661	U	662	U	663	U	664	cWW		cwW	cWw		cWW
13	IL_3R2D_002	3R2D	0.6455	0	Tandem non-canonical cWW pairs	S+R	RNA (12-mer)	C	6	U	7	U	8	G	9	*	C	6	U	7	U	8	G	9	cWW		cwW	cWw		cWW
14	IL_8ID2_001	8ID2	0.6506	0	Tandem non-canonical cWW pairs	C	RNA (24-mer)	A	5	C	6	U	7	G	8	*	C	17	U	18	U	19	U	20	cWW	ncWW	cWW	cWw		cWW
15	IL_8C3A_060	8C3A	0.6912	0	Tandem non-canonical cWW pairs	1	LSU rRNA	A	1339	U	1340	U	1341	G	1342	*	C	1354	U	1355	U	1356	U	1357	cWW		cwW	cWw		cWW
16	IL_4UYK_003	4UYK	0.6963	0	Tandem non-canonical cWW pairs	R	SRP RNA	G	81	U	82	U	83	C	84	*	G	117	U	118	U	119	C	120	cWW		cwW	cWw		cWW
17	IL_280D_001	280D	0.7373	0	Tandem non-canonical cWW pairs	B+A	RNA (12-mer)	C	17	U	18	U	19	G	20	*	C	5	U	6	U	7	G	8	cWW		cwW	cWw		cWW
18	IL_8C3A_134	8C3A	0.7538	0	Tandem non-canonical cWW pairs	1	LSU rRNA	C	3200	U	3201	U	3202	A	3203	*	U	3214	U	3215	U	3216	G	3217	cWW		cwW	cWw		cWW
19	IL_6JDV_001	6JDV	0.7378	0	Tandem non-canonical cWW pairs	B	sgRNA	C	32	U	33	C	34	C	35	*	G	66	U	67	U	68	G	69	cWW		cwW	ncWS		cWW
20	IL_8HNT_001	8HNT	0.7360	0	Tandem non-canonical cWW pairs	B	sgRNA	C	32	U	33	C	34	C	35	*	G	54	U	55	U	56	G	57	cWW		cwW	ncWS		cWW
21	IL_8UIW_002	8UIW	0.7154	0		N	yjdF RNA (R. gauvreauii)	G	112	U	113	C	114	G	115	*	C	100	U	101	U	102	C	103	cWW		cwW			cWW
22	IL_4V88_473	4V88	0.7080	0	Tandem non-canonical cWW pairs	A6	SSU rRNA	C	1675	U	1676	C	1677	A	1678	*	U	1723	U	1724	U	1725	G	1726	cWW		cwW			cWW
23	IL_5TBW_041	5TBW	0.6722	0	Tandem non-canonical cWW pairs	1	LSU rRNA	U	1041	U	1042	C	1043	U	1044	*	A	1006	U	1007	U	1008	A	1009	cWW		cwW			cWW
24	IL_5C5W_001	5C5W	0.5828	0	Tandem non-canonical cWW pairs	A	RNA (19-mer)	C	15\|\|\|\|5_556	U	16\|\|\|\|5_556	A	17\|\|\|\|5_556	G	18\|\|\|\|5_556	*	C	2	C	3	U	4	G	5	cWW		cwW	cWW		cWW
25	IL_5C5W_003	5C5W	0.5828	0	Tandem non-canonical cWW pairs	A	RNA (19-mer)	C	15	U	16	A	17	G	18	*	C	2\|\|\|\|5_556	C	3\|\|\|\|5_556	U	4\|\|\|\|5_556	G	5\|\|\|\|5_556	cWW		cwW	cWW		cWW
26	IL_402D_001	402D	0.4919	0	Tandem non-canonical cWW pairs	A+B	RNA (8-mer)	C	103	C	104	A	105	G	106	*	C	111	C	112	A	113	G	114	cWW		cWW	cWW		cWW
27	IL_4V88_461	4V88	0.6860	0	Tandem non-canonical cWW pairs	A6	SSU rRNA	C	1495	U	1496	U	1497	G	1498	*	C	1509	U	1510	U	1511	G	1512	cWW		cwW			cWW
28	IL_4V88_391	4V88	0.6511	0	Tandem non-canonical cWW pairs	A6	SSU rRNA	U	302	U	303	U	304	C	305	*	G	109	U	110	U	111	A	112	cWW		cwW	cWw		cWW
29	IL_8C3A_399	8C3A	0.6540	0	Tandem non-canonical cWW pairs	CM	SSU rRNA	U	300	U	301	U	302	C	303	*	G	109	U	110	U	111	A	112	cWW		cwW	cWw		cWW
30	IL_5TBW_129	5TBW	0.6480	0	Tandem non-canonical cWW pairs	1	LSU rRNA	U	3300	U	3301	U	3302	G	3303	*	C	3311	U	3312	U	3313	A	3314	cWW		cwW	cWw		cWW
31	IL_8C3A_135	8C3A	0.5639	0	Tandem non-canonical cWW pairs	1	LSU rRNA	C	3276	U	3277	U	3278	A	3279	*	U	3265	U	3266	U	3267	G	3268	cWW		cWw	cWw		cWW
32	IL_5EW4_002	5EW4	0.5019	0	Tandem non-canonical cWW pairs	B+A	RNA (22-mer)	C	8	C	9	C	10	G	11	*	C	14	C	15	C	16	G	17	cWW		ncBW	ncBW		cWW
33	IL_3NDB_001	3NDB	0.4290	0	Self complementary	M	SRP RNA	C	253	G	254	G	255	G	256	*	C	125	U	126	C	127	G	128	cWW		ncWS	cWW		ncWW
34	IL_1D4R_001	1D4R	0.3963	0	Tandem non-canonical cWW pairs	A+B	29-MER OF MODIFIED SRP RNA HELIX 6	G	4	A	5	C	6	C	7	*	G	22	A	23	C	24	C	25	cWW		cWW	cWWa		cWW
35	IL_4WF9_109	4WF9	0.3587	0	Tandem non-canonical cWW pairs	Y	5S rRNA	C	110	A	111	G	112	G	113	*	C	2	U	3	G	4	G	5	cWW		ncHW	ncWWa		cWW
36	IL_1JID_002	1JID	0.3508	0	Tandem non-canonical cWW pairs	B	HELIX 6 OF HUMAN SRP RNA	G	138	A	139	C	140	C	141	*	G	156	A	157	C	158	C	159	cWW		cWW	cWW		cWW
37	IL_1D4R_003	1D4R	0.3602	0	Tandem non-canonical cWW pairs	A+B	29-MER OF MODIFIED SRP RNA HELIX 6	G	22	A	23	C	24	C	25	*	G	4	A	5	C	6	C	7	cWW		cWW	cWW		cWW
38	IL_1MFQ_004	1MFQ	0.3704	0	Tandem non-canonical cWW pairs	A	SRP RNA	G	156	A	157	C	158	C	159	*	G	138	A	139	C	140	C	141	cWW		ncWW	ncWW		cWW
39	IL_3WBM_002	3WBM	0.3995	0	Tandem non-canonical cWW pairs	Y+X	RNA (25-MER)	G	14	A	15	C	16	U	17	*	A	10	C	11	C	12	C	13	cWW		ncWW	ncBW		cWW
40	IL_3WBM_003	3WBM	0.4223	0	Tandem non-canonical cWW pairs	X+Y	RNA (25-MER)	G	14	A	15	C	16	U	17	*	A	10	C	11	C	12	C	13	cWW		cWW	ncBW		cWW
41	IL_7VYX_002	7VYX	0.4674	0		C	sgRNA	C	13	U	14	U	15	C	16	*	G	50	G	51	U	52	G	53	ncWW		ncWw	ncWWa		cWW
42	IL_1L9A_002	1L9A	0.5004	0	Tandem non-canonical cWW pairs	B	signal recognition particle RNA S domain	G	120	U	121	U	122	C	123	*	G	227	A	228	U	229	C	230	cWW		ncWw	ncWW		cWW
43	IL_4EYA_008	4EYA	0.4453	0	Tandem non-canonical cWW pairs	k+l	RNA (12-mer)	C	6	U	7	U	8	G	9	*	C	6	U	7	U	8	G	9	cWW		ncWw	ncWw		cWW
44	IL_4EYA_010	4EYA	0.4092	0	Tandem non-canonical cWW pairs	n+m	RNA (12-mer)	C	6	U	7	U	8	G	9	*	C	6	U	7	U	8	G	9	ncWW		ncWw	ncWw		cWW
45	IL_361D_001	361D	0.4340	0	Tandem non-canonical cWW pairs	B	RNA (20-mer)	C	93	C	94	U	95	G	96	*	U	80	G	81	G	82	G	83	cWW			ncWWa		cWW
46	IL_8C3A_444	8C3A	0.1054	0	Tandem non-canonical cWW pairs	CM	SSU rRNA	G	1059	C	1060	A	1061	C	1062	*	G	1026	G	1027	A	1028	U	1029	cWW		ncWWa	cWW		cWW
47	IL_4V88_438	4V88	0.0000	0	Tandem non-canonical cWW pairs	A6	SSU rRNA	G	1074	C	1075	A	1076	C	1077	*	G	1041	G	1042	A	1043	U	1044	cWW		ncBW	cWW		cWW
48	IL_5J7L_283	5J7L	0.2540	0	Tandem non-canonical cWW pairs	DA	LSU rRNA	G	1038	A	1039	A	1040	G	1041	*	C	1114	G	1115	G	1116	C	1117	cWW		cWW	cWW		cWW
49	IL_8C3A_109	8C3A	0.3082	0	Tandem non-canonical cWW pairs	1	LSU rRNA	U	2707	A	2708	C	2709	A	2710	*	U	2690	U	2691	G	2692	A	2693	cWW		cWW			cWW
50	IL_5TBW_100	5TBW	0.2895	0	Tandem non-canonical cWW pairs	1	LSU rRNA	U	2735	A	2736	C	2737	A	2738	*	U	2718	U	2719	G	2720	A	2721	cWW		cWW			cWW
51	IL_8C3A_438	8C3A	0.4050	1	Tandem non-canonical cWW pairs	CM	SSU rRNA	C	859	G	860	G	862	G	863	*	C	935	A	936	A	937	G	938	cWW		cWW	cWW		cWW
52	IL_4V88_431	4V88	0.4208	1	Tandem non-canonical cWW pairs	A6	SSU rRNA	C	874	G	875	G	877	G	878	*	C	950	A	951	A	952	G	953	cWW		cWW	cWW		cWW
53	IL_6XJQ_002	6XJQ	0.4854	1		A	Self-alkylating ribozyme (58-MER)	C	48	G	49	A	50	U	51	*	A	10	G	11	A	13	G	14	cWW		cWS	cWW		cWW
54	IL_8C3A_436	8C3A	0.5191	1		CM	SSU rRNA	G	852	G	853	A	854	C	855	*	G	942	U	943	U	945	U	946	ncWW		ncWWa			cWW
55	IL_4V88_429	4V88	0.5172	1	Tandem non-canonical cWW pairs	A6	SSU rRNA	G	867	G	868	A	869	C	870	*	G	957	U	958	U	960	U	961	cWW		ncWW			cWW
56	IL_6JDV_002	6JDV	0.3876	0	Tandem non-canonical cWW pairs	B	sgRNA	A	63	C	64	C	65	G	66	*	C	35	C	36	U	37	U	38	cWW		cWW			cWW
57	IL_5LQO_002	5LQO	0.3023	0	Tandem non-canonical cWW pairs	A+B	RNA (10-mer)	G	4	G	5	A	6	C	7	*	G	4	G	5	A	6	C	7	cWW		cWW	cWW		cWW
58	IL_8C3A_439	8C3A	0.4586	0	Tandem non-canonical cWW pairs	CM	SSU rRNA	A	909	G	910	A	911	C	912	*	G	870	U	871	A	872	U	873	cWW		cWW			cWW
59	IL_4V88_432	4V88	0.4615	0	Tandem non-canonical cWW pairs	A6	SSU rRNA	A	924	G	925	A	926	C	927	*	G	885	U	886	A	887	U	888	cWW		cWW			cWW
60	IL_4V88_430	4V88	0.3832	0	Tandem non-canonical cWW pairs	A6	SSU rRNA	G	953	G	954	A	955	C	956	*	G	871	G	872	U	873	C	874	cWW			cWW		cWW
61	IL_8C3A_437	8C3A	0.3654	0	Tandem non-canonical cWW pairs	CM	SSU rRNA	G	938	G	939	A	940	C	941	*	G	856	G	857	U	858	C	859	cWW			cWW		cWW
62	IL_1L9A_005	1L9A	0.4403	0	Tandem non-canonical cWW pairs	B	signal recognition particle RNA S domain	G	138	A	139	C	140	C	141	*	G	156	A	157	C	158	C	159	cWW		ncWW	ncWWa		cWW
63	IL_4K27_001	4K27	0.4515	0	Tandem non-canonical cWW pairs	U	Myotonic Dystrophy Type 2 RNA	C	4	C	5	U	6	G	7	*	C	49	C	50	U	51	G	52	cWW		cWW	cWW		cWW
64	IL_3CUL_002	3CUL	0.4010	0	Tandem non-canonical cWW pairs	C	RNA (92-MER)	G	56	U	57	G	58	G	59	*	C	87	A	88	G	89	C	90	cWW		ncWWa	ncWW		cWW
65	IL_6DTD_001	6DTD	0.4073	0	Tandem non-canonical cWW pairs	C	RNA (37-MER)	A	31	A	32	A	33	C	34	*	G	5	C	6	A	7	U	8	cWW		cWw	ncWB		cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CUUG*CUUG	7
GACC*GACC	5
CCUG*CCUG	3
CCCG*CCCG	2
CUUC*GUCG	2
AUUG*CUUU	2
CUUA*UUUG	2
CUCC*GUUG	2
CUAG*CCUG	2
UUUC*GUUA	2
GACU*ACCC	2
GCAC*GGAU	2
UACA*UUGA	2
CGGGG*CAAG	2
GGAC*GUUUU	2
AGAC*GUAU	2
GGAC*GGUC	2
AUUU*GUUU	1
AUUC*GUCU	1
UUUG*UUUG	1
GCUG*CUCC	1
ACUG*CUUU	1
GUUC*GUUC	1
GUCG*CUUC	1
CUCA*UUUG	1
UUCU*AUUA	1
CCAG*CCAG	1
UUUG*CUUA	1
CGGG*CUCG	1
CAGG*CUGG	1
CUUC*GGUG	1
GUUC*GAUC	1
CCUG*UGGG	1
GAAG*CGGC	1
CGAU*AGAAG	1
ACCG*CCUU	1
GGAC*GGAC	1
GUGG*CAGC	1
AAAC*GCAU	1

Non-Watson-Crick part of the motif

Sequence	Counts
UU*UU	17
UC*UU	5
AC*AC	5
CU*CU	3
UU*UC	3
CC*CC	2
UA*CU	2
AC*CC	2
CA*GA	2
AC*UG	2
GGG*AA	2
GA*UUU	2
GA*UA	2
GA*GU	2
CU*UC	1
CU*UU	1
CA*CA	1
GG*UC	1
AG*UG	1
UU*GU	1
UU*AU	1
CU*GG	1
AA*GG	1
GA*GAA	1
CC*CU	1
GA*GA	1
UG*AG	1
AA*CA	1

Release history

Release	3.83	3.84	3.85
Date	2024-04-24	2024-05-22	2024-06-19
Status	Updated, 1 parent	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Motif IL_30621.3 Version IL_30621.3 of this group appears in releases 3.83 to 3.85 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_30621.3 Version IL_30621.3 of this group appears in releases 3.83 to 3.85

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Csv

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