9T8L Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_9T8L_001 | 1/a/566:575 | T-loop with 2 stacked bulged bases | homologous HL_7A0S_018 HL_33597.5 | |
| HL_9T8L_002 | 1/a/744:753 | No text annotation | homologous HL_7A0S_022 HL_50204.2 | |
| HL_9T8L_003 | 1/a/779:785 | No text annotation | geometric HL_8B0X_054 HL_79773.1 | |
| HL_9T8L_004 | 1/a/826:831 | No text annotation | homologous HL_7A0S_024 HL_27530.2 | |
| HL_9T8L_005 | 1/a/955:962 | GNRA | homologous HL_7A0S_026 HL_34789.5 | |
| HL_9T8L_006 | 1/a/978:985 | No text annotation | homologous HL_7A0S_027 HL_47171.2 | |
| HL_9T8L_007 | 1/a/1777:1787 | No text annotation | geometric HL_8B0X_073 HL_87681.2 | |
| HL_9T8L_008 | 1/a/1949:1957 | No text annotation | homologous HL_7A0S_048 HL_33350.1 | |
| HL_9T8L_009 | 1/a/2027:2036 | No text annotation | homologous HL_7A0S_049 HL_78372.2 | |
| HL_9T8L_010 | 1/a/2248:2256 | LSU P loop | homologous HL_7A0S_052 HL_11974.3 | |
| HL_9T8L_011 | 1/a/2551:2557 | No text annotation | ||
| HL_9T8L_012 | 1/a/2594:2599 | GNRA | homologous HL_7A0S_062 HL_34789.5 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_9T8L_001 | 1/a/564:566, 1/a/575:577 | Isolated non-canonical cWW pair | homologous IL_7A0S_011 IL_71625.4 | |
| IL_9T8L_002 | 1/a/672:674, 1/a/806:808 | Isolated non-canonical cWW pair | homologous IL_7A0S_014 IL_01003.5 | |
| IL_9T8L_003 | 1/a/674:678, 1/a/799:806 | tHW-tHW cross-strand stack | homologous IL_7A0S_015 IL_73855.2 | |
| IL_9T8L_004 | 1/a/738:740, 1/a/757:758 | No text annotation | geometric IL_8B0X_084 IL_48076.9 | |
| IL_9T8L_005 | 1/a/775:777, 1/a/787:791 | No text annotation | geometric IL_9E6Q_032 IL_89509.2 | |
| IL_9T8L_006 | 1/a/1770:1771, 1/a/1980:1982 | Single bulged A | homologous IL_7A0S_064 IL_14190.3 | |
| IL_9T8L_007 | 1/a/1933:1934, 1/a/1964:1967 | Bulged stacked bases | homologous IL_7A0S_071 IL_24886.3 | |
| IL_9T8L_008 | 1/a/1934:1945, 1/a/1961:1964 | No text annotation | homologous IL_7A0S_072 IL_04332.3 | |
| IL_9T8L_009 | 1/a/2050:2052, 1/a/2617:2618 | Major groove platform | homologous IL_7A0S_073 IL_48076.9 | |
| IL_9T8L_010 | 1/a/2054:2056, 1/a/2612:2615 | No text annotation | geometric IL_8B0X_140 IL_80025.2 | |
| IL_9T8L_011 | 1/a/2067:2069, 1/a/2442:2443 | Single bulged U | homologous IL_7A0S_075 IL_97561.6 | |
| IL_9T8L_012 | 1/a/2070:2071, 1/a/2438:2441 | Minor groove platform | homologous IL_7A0S_076 IL_34520.4 | |
| IL_9T8L_013 | 1/a/2454:2455, 1/a/2496:2498 | Major groove platform | homologous IL_7A0S_084 IL_48076.9 | |
| IL_9T8L_014 | 1/a/2457:2459, 1/a/2493:2494 | Major groove platform | homologous IL_7A0S_085 IL_48076.9 | |
| IL_9T8L_015 | 1/a/2459:2461, 1/a/2489:2493 | Major groove minor groove platform with extra cWW | homologous IL_7A0S_086 IL_36931.3 | |
| IL_9T8L_016 | 1/a/2510:2512, 1/a/2574:2578 | Isolated non-canonical cWW with bulges | homologous IL_7A0S_089 IL_68118.5 | |
| IL_9T8L_017 | 1/a/2512:2513, 1/a/2571:2574 | Multiple bulged bases | homologous IL_7A0S_090 IL_44609.3 | |
| IL_9T8L_018 | 1/a/2591:2592, 1/a/2601:2603 | No text annotation | geometric IL_9E6Q_092 IL_14190.3 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_9T8L_001 | 1/a/2517:2520, 1/a/2545:2547, 1/a/2561:2567 | No text annotation | homologous J3_7A0S_011 J3_32601.6 | |
| J5_9T8L_001 | 1/a/2057:2064, 1/a/2446:2454, 1/a/2498:2507, 1/a/2581:2588, 1/a/2606:2611 | No text annotation | ||
| J5_9T8L_002 | 1/a/2074:2077, 1/a/2243:2246, 1/a/2258:2259, 1/a/2281:2282, 1/a/2427:2435 | No text annotation | homologous J5_7A0S_007 J5_39529.2 |
Problematic loops
No problematic loops
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