Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_3J2D_0011/N/12:22No text annotation
Not in a motif group
homologous
HL_4LFB_001
HL_89881.2
HL_3J2D_0021/N/82:87No text annotation
Not in a motif group
HL_3J2D_0031/N/158:163GNRA
Not in a motif group
homologous
HL_4LFB_003
HL_35490.1
HL_3J2D_0041/N/186:191GNRA
Not in a motif group
homologous
HL_5J7L_004
HL_35490.1
HL_3J2D_0051/N/207:212No text annotation
Not in a motif group
HL_3J2D_0061/N/258:268No text annotation
Not in a motif group
HL_3J2D_0071/N/296:301GNRA
Not in a motif group
homologous
HL_4LFB_007
HL_35490.1
HL_3J2D_0081/N/320:333No text annotation
Not in a motif group
homologous
HL_5J7L_008
HL_81205.2
HL_3J2D_0091/N/342:347No text annotation
Not in a motif group
homologous
HL_6CZR_080
HL_03562.2
HL_3J2D_0101/N/379:384GNRA
Not in a motif group
homologous
HL_5J7L_010
HL_35490.1
HL_3J2D_0111/N/419:424UNCG
Not in a motif group
homologous
HL_5J7L_011
HL_03562.2
HL_3J2D_0121/N/459:472No text annotation
Not in a motif group
HL_3J2D_0131/N/522:527No text annotation
Not in a motif group
geometric
HL_4YAZ_004
HL_91104.1
HL_3J2D_0141/N/617:623No text annotation
Not in a motif group
homologous
HL_5J7L_014
HL_26881.3
HL_3J2D_0151/N/689:698No text annotation
Not in a motif group
homologous
HL_4LFB_015
HL_12326.1
HL_3J2D_0161/N/726:731Other HL
Not in a motif group
homologous
HL_5J7L_016
HL_87030.2
HL_3J2D_0171/N/786:796No text annotation
Not in a motif group
HL_3J2D_0181/N/840:846No text annotation
Not in a motif group
HL_3J2D_0191/N/862:867GNRA
Not in a motif group
homologous
HL_4LFB_019
HL_35490.1
HL_3J2D_0201/N/897:902GNRA
Not in a motif group
homologous
HL_4LFB_020
HL_35490.1
HL_3J2D_0211/N/963:972No text annotation
Not in a motif group
HL_3J2D_0221/N/1012:1017GNRA
Not in a motif group
homologous
HL_4LFB_022
HL_35490.1
HL_3J2D_0231/N/1028:1033No text annotation
Not in a motif group
geometric
HL_5U3G_001
HL_87030.2
HL_3J2D_0241/N/1076:1081Other HL
Not in a motif group
geometric
HL_1P6V_001
HL_03562.2
HL_3J2D_0251/N/1089:1096No text annotation
Not in a motif group
HL_3J2D_0261/N/1134:1140No text annotation
Not in a motif group
homologous
HL_5J7L_025
HL_03562.2
HL_3J2D_0271/N/1165:1171No text annotation
Not in a motif group
homologous
HL_5J7L_026
HL_90617.2
HL_3J2D_0281/N/1265:1270Other HL
Not in a motif group
homologous
HL_4LFB_028
HL_35490.1
HL_3J2D_0291/N/1314:1323No text annotation
Not in a motif group
homologous
HL_5J7L_028
HL_89380.2
HL_3J2D_0301/N/1356:1366No text annotation
Not in a motif group
HL_3J2D_0311/N/1444:1458No text annotation
Not in a motif group
HL_3J2D_0321/N/1515:1520No text annotation
Not in a motif group
homologous
HL_4LFB_032
NA

Problematic loops

No problematic loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_3J2D_0011/N/30:32,
1/N/552:553
Single bulged G
Not in a motif group
homologous
IL_6CZR_113
IL_00225.3
IL_3J2D_0021/N/44:45,
1/N/396:398
Single bulged A
Not in a motif group
homologous
IL_5J7L_002
IL_37497.5
IL_3J2D_0031/N/54:56,
1/N/356:357
Minor groove platform
Not in a motif group
homologous
IL_5J7L_004
IL_42622.3
IL_3J2D_0041/N/61:63,
1/N/104:106
No text annotation
Not in a motif group
geometric
IL_7A0S_026
IL_86319.2
IL_3J2D_0051/N/63:66,
1/N/103:104
Multiple bulged bases
Not in a motif group
geometric
IL_1FUF_002
IL_16396.2
IL_3J2D_0061/N/67:69,
1/N/99:102
Minor groove platform with extra cWW
Not in a motif group
homologous
IL_5J7L_006
IL_65006.1
IL_3J2D_0071/N/70:73,
1/N/97:98
Minor groove platform
Not in a motif group
homologous
IL_5J7L_007
IL_15052.1
IL_3J2D_0081/N/75:82,
1/N/87:95
No text annotation
Not in a motif group
IL_3J2D_0091/N/128:136,
1/N/227:233
No text annotation
Not in a motif group
IL_3J2D_0111/N/144:146,
1/N/176:178
Isolated cWH basepair
Not in a motif group
homologous
IL_5J7L_011
IL_70707.1
IL_3J2D_0121/N/147:153,
1/N/168:175
tWH-tWH-tHW-tHW
Not in a motif group
homologous
IL_5J7L_012
IL_80604.2
IL_3J2D_0141/N/200:202,
1/N/215:217
No text annotation
Not in a motif group
geometric
IL_7A0S_026
IL_86319.2
IL_3J2D_0151/N/202:207,
1/N/212:215
No text annotation
Not in a motif group
IL_3J2D_0161/N/242:247,
1/N/277:284
Kink-turn with non-sequential stacking
Not in a motif group
homologous
IL_5J7L_014
IL_45067.2
IL_3J2D_0171/N/248:253,
1/N/273:276
No text annotation
Not in a motif group
IL_3J2D_0181/N/292:293,
1/N/304:308
No text annotation
Not in a motif group
IL_3J2D_0191/N/367:369,
1/N/392:393
Single bulged U
Not in a motif group
geometric
IL_5TBW_130
IL_83039.16
IL_3J2D_0201/N/370:375,
1/N/389:391
No text annotation
Not in a motif group
IL_3J2D_0211/N/375:376,
1/N/387:389
Single bulged G
Not in a motif group
homologous
IL_5J7L_019
IL_00225.3
IL_3J2D_0231/N/408:416,
1/N/427:434
No text annotation
Not in a motif group
IL_3J2D_0241/N/440:442,
1/N/492:497
No text annotation
Not in a motif group
homologous
IL_5J7L_021
IL_22248.1
IL_3J2D_0251/N/446:450,
1/N/483:488
tSH-tHW-tWW
Not in a motif group
homologous
IL_5J7L_022
IL_88269.3
IL_3J2D_0261/N/450:455,
1/N/477:483
No text annotation
Not in a motif group
IL_3J2D_0281/N/457:459,
1/N/472:475
No text annotation
Not in a motif group
IL_3J2D_0291/N/504:511,
1/N/540:541
SSU/LSU pseudoknot
Not in a motif group
homologous
IL_5J7L_024
IL_15861.7
IL_3J2D_0301/N/515:521,
1/N/528:536
No text annotation
Not in a motif group
IL_3J2D_0311/N/569:575,
1/N/880:881
No text annotation
Not in a motif group
homologous
IL_4LFB_022
IL_69996.1
IL_3J2D_0321/N/580:584,
1/N/757:761
tSH-tHW-tHS
Not in a motif group
homologous
IL_5J7L_027
IL_17136.1
IL_3J2D_0341/N/594:596,
1/N/644:645
Major groove platform
Not in a motif group
homologous
IL_5J7L_028
IL_27635.3
IL_3J2D_0351/N/597:598,
1/N/640:643
Major groove minor groove platform; mini C-loop
Not in a motif group
homologous
IL_5J7L_029
IL_09061.7
IL_3J2D_0371/N/605:612,
1/N/628:633
No text annotation
Not in a motif group
IL_3J2D_0381/N/654:655,
1/N/751:754
Major groove platform; stack outside cWW
Not in a motif group
geometric
IL_5J7L_031
IL_50694.2
IL_3J2D_0401/N/658:659,
1/N/746:748
Single stack bend
Not in a motif group
homologous
IL_5J7L_032
IL_76488.3
IL_3J2D_0421/N/662:666,
1/N/740:743
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_4LFB_029
IL_71110.1
IL_3J2D_0431/N/683:688,
1/N/699:707
Kink-turn
Not in a motif group
homologous
IL_4LFB_031
IL_37722.1
IL_3J2D_0441/N/773:779,
1/N/803:806
No text annotation
Not in a motif group
IL_3J2D_0451/N/779:783,
1/N/799:803
tSH-tHW-tHS
Not in a motif group
geometric
IL_4LFB_033
IL_17136.1
IL_3J2D_0461/N/831:833,
1/N/853:855
No text annotation
Not in a motif group
geometric
IL_3R1D_012
NA
IL_3J2D_0471/N/887:894,
1/N/905:910
8x6 Sarcin-Ricin with inserted Y; G-bulge
Not in a motif group
homologous
IL_4LFB_034
IL_24606.2
IL_3J2D_0481/N/922:924,
1/N/1392:1395
No text annotation
Not in a motif group
geometric
IL_4P3U_007
IL_86319.2
IL_3J2D_0491/N/924:927,
1/N/1390:1392
No text annotation
Not in a motif group
IL_3J2D_0501/N/933:935,
1/N/1380:1384
Minor groove platform
Not in a motif group
homologous
IL_4LFB_037
IL_47078.1
IL_3J2D_0521/N/993:997,
1/N/1044:1045
Minor groove platform
Not in a motif group
homologous
IL_5J7L_043
IL_47078.1
IL_3J2D_0531/N/998:999,
1/N/1041:1043
Single stack bend
Not in a motif group
homologous
IL_5J7L_044
IL_76488.3
IL_3J2D_0541/N/1048:1050,
1/N/1208:1209
Single bulged U
Not in a motif group
homologous
IL_4LFB_042
IL_83039.16
IL_3J2D_0551/N/1052:1056,
1/N/1204:1206
Isolated cWS basepair
Not in a motif group
homologous
IL_4LFB_044
IL_76319.2
IL_3J2D_0561/N/1056:1059,
1/N/1198:1204
No text annotation
Not in a motif group
IL_3J2D_0581/N/1121:1128,
1/N/1144:1152
No text annotation
Not in a motif group
IL_3J2D_0591/N/1129:1132,
1/N/1142:1143
Minor groove platform
Not in a motif group
homologous
IL_5J7L_052
IL_15052.1
IL_3J2D_0601/N/1158:1161,
1/N/1175:1181
No text annotation
Not in a motif group
geometric
IL_5J7L_053
IL_42032.1
IL_3J2D_0611/N/1247:1253,
1/N/1284:1290
No text annotation
Not in a motif group
IL_3J2D_0631/N/1255:1258,
1/N/1277:1282
No text annotation
Not in a motif group
geometric
IL_5J7L_055
IL_75461.4
IL_3J2D_0641/N/1259:1263,
1/N/1272:1276
Triple sheared
Not in a motif group
homologous
IL_5J7L_056
IL_56467.8
IL_3J2D_0651/N/1303:1308,
1/N/1329:1334
No text annotation
Not in a motif group
geometric
IL_5J7L_057
IL_19954.2
IL_3J2D_0671/N/1401:1404,
1/N/1497:1501
No text annotation
Not in a motif group
IL_3J2D_0681/N/1405:1407,
1/N/1494:1496
No text annotation
Not in a motif group
geometric
IL_4ZC7_001
IL_86319.2
IL_3J2D_0691/N/1407:1409,
1/N/1491:1494
No text annotation
Not in a motif group
IL_3J2D_0711/N/1412:1414,
1/N/1486:1488
Isolated near basepair
Not in a motif group
geometric
IL_3NJ7_004
IL_52767.4
IL_3J2D_0721/N/1414:1416,
1/N/1484:1486
No text annotation
Not in a motif group
geometric
IL_1L9A_003
IL_70707.1
IL_3J2D_0731/N/1416:1419,
1/N/1481:1484
Double sheared
Not in a motif group
homologous
IL_4LFB_060
IL_09705.10
IL_3J2D_0741/N/1430:1435,
1/N/1466:1470
Triple sheared related
Not in a motif group
homologous
IL_5J7L_063
IL_64879.2
IL_3J2D_0751/N/1437:1439,
1/N/1462:1464
No text annotation
Not in a motif group
geometric
IL_6IA2_004
IL_86319.2
IL_3J2D_0761/N/1439:1443,
1/N/1459:1462
No text annotation
Not in a motif group

Problematic loops

#loop idProblemSequence
IL_3J2D_010UU cWW
IL_3J2D_013No text annotation
IL_3J2D_022Isolated cWH basepair
IL_3J2D_027No text annotation
IL_3J2D_033No text annotation
IL_3J2D_036Stack and bulge
IL_3J2D_039No text annotation
IL_3J2D_041No text annotation
IL_3J2D_051No text annotation
IL_3J2D_057Isolated cWS basepair
IL_3J2D_062No text annotation
IL_3J2D_066UU cWW
IL_3J2D_070No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_3J2D_0011/N/46:52,
1/N/359:367,
1/N/393:395
No text annotation
Not in a motif group
J3_3J2D_0021/N/826:829,
1/N/857:861,
1/N/868:874
No text annotation
Not in a motif group
homologous
J3_5J7L_004
NA
J3_3J2D_0031/N/936:939,
1/N/1344:1350,
1/N/1372:1379
No text annotation
Not in a motif group
homologous
J3_4LFB_002
NA
J3_3J2D_0041/N/941:947,
1/N/1234:1237,
1/N/1337:1342
No text annotation
Not in a motif group
J3_3J2D_0051/N/953:962,
1/N/973:984,
1/N/1221:1228
No text annotation
Not in a motif group
J3_3J2D_0061/N/990:993,
1/N/1045:1047,
1/N/1210:1215
No text annotation
Not in a motif group
homologous
J3_5J7L_007
NA
J3_3J2D_0071/N/1002:1006,
1/N/1023:1027,
1/N/1034:1038
No text annotation
Not in a motif group
J3_3J2D_0081/N/1060:1068,
1/N/1107:1114,
1/N/1186:1197
No text annotation
Not in a motif group
J3_3J2D_0091/N/1116:1118,
1/N/1155:1158,
1/N/1181:1184
No text annotation
Not in a motif group
homologous
J3_5J7L_010
NA
J3_3J2D_0101/N/1237:1241,
1/N/1296:1303,
1/N/1334:1337
No text annotation
Not in a motif group
homologous
J3_5J7L_011
NA

Problematic loops

No problematic loops


Coloring options:
Copyright 2024 BGSU RNA group. Page generated in 0.1532 s